A B C D E F G H I J L M N O P R S T U W

A

a - Variable in class net.imglib2.realtransform.AbstractAffineTransform

a - Variable in class net.imglib2.realtransform.AffineTransform2D

a - Variable in class net.imglib2.realtransform.AffineTransform3D

a - Variable in class net.imglib2.realtransform.PolynomialTransform2D

holds two coefficients for each polynomial coefficient, including 1 initialized at 0 order, i.e.

AbstractAffineTransform - Class in net.imglib2.realtransform

An abstract implementation of an affine transformation that returns default values referring to the identity transformation for all fields.

AbstractAffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform

AbstractAffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform

AbstractAffineTransform(int) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform

AbstractDifferentiableRealTransform - Class in net.imglib2.realtransform.inverse

AbstractDifferentiableRealTransform() - Constructor for class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform

AbstractRealTransformSequence<R extends RealTransform> - Class in net.imglib2.realtransform

Shared properties of RealTransformSequence and InvertibleRealTransformSequence, sequences of something that extends RealTransforms.

AbstractRealTransformSequence() - Constructor for class net.imglib2.realtransform.AbstractRealTransformSequence

AbstractScale - Class in net.imglib2.realtransform

n-d arbitrary scaling.

AbstractScale(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractScale

AbstractScale(double...) - Constructor for class net.imglib2.realtransform.AbstractScale

AbstractTranslation - Class in net.imglib2.realtransform

n-d translation.

AbstractTranslation(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractTranslation

AbstractTranslation(int) - Constructor for class net.imglib2.realtransform.AbstractTranslation

AbstractTranslation(double...) - Constructor for class net.imglib2.realtransform.AbstractTranslation

access - Variable in class net.imglib2.realtransform.PositionFieldTransform

add(R) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

Append a RealTransform to the sequence.

addDimension(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews

Add a dimension to a RealRandomAccessible.

affine(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews

See a RealRandomAccessible as a RandomAccessible transformed by an AffineGet.

AffineGet - Interface in net.imglib2.realtransform

An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be accessed via row and column index.

AffineMatrix2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

AffineMatrix3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

AffineMatrix3D(double...) - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

AffineRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

AffineRandomAccess(AffineRandomAccessible<T, R>.AffineRandomAccess) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

AffineRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform

A RandomAccessible whose samples are generated by rasterizing a RealRandomAccessible transformed by an affine transformation.

AffineRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible

AffineRandomAccessible.AffineRandomAccess - Class in net.imglib2.realtransform

RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.

affineReal(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews

See a RealRandomAccessible as transformed by an AffineGet .

AffineRealRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

AffineRealRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform

A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an affine transformation.

AffineRealRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible

AffineRealRandomAccessible.AffineRealRandomAccess - Class in net.imglib2.realtransform

RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.

AffineSet - Interface in net.imglib2.realtransform

An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be set via row and column index and from double arrays.

AffineTransform - Class in net.imglib2.realtransform

An n-dimensional affine transformation.

AffineTransform(int) - Constructor for class net.imglib2.realtransform.AffineTransform

AffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AffineTransform

AffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AffineTransform

AffineTransform(double...) - Constructor for class net.imglib2.realtransform.AffineTransform

AffineTransform(AffineTransform) - Constructor for class net.imglib2.realtransform.AffineTransform

AffineTransform2D - Class in net.imglib2.realtransform

2d-affine transformation.

AffineTransform2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D

AffineTransform2D(AffineTransform2D.AffineMatrix2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D

AffineTransform2D(AffineTransform2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D

AffineTransform2D.AffineMatrix2D - Class in net.imglib2.realtransform

AffineTransform3D - Class in net.imglib2.realtransform

3d-affine transformation.

AffineTransform3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D

AffineTransform3D(AffineTransform3D.AffineMatrix3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D

AffineTransform3D(AffineTransform3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D

AffineTransform3D.AffineMatrix3D - Class in net.imglib2.realtransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractAffineTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractScale

apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation

apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractTranslation

apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D

apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform2D

apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D

apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform3D

apply(double[], double[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

apply(float[], float[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.DisplacementFieldTransform

apply(float[], float[]) - Method in class net.imglib2.realtransform.DisplacementFieldTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.DisplacementFieldTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

apply(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.HomographyTransform2D

apply(double[], double[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform

apply(float[], float[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InterpolatedRealTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

apply(float[], float[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Deprecated.

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D

apply(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InversePerspective3D

apply(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform

apply(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform

Deprecated.

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InverseRealTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D

apply(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Perspective3D

apply(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

apply(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

apply(double[], double[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D

apply(float[], float[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolynomialTransform2D

apply(double[], double[]) - Method in class net.imglib2.realtransform.PositionFieldTransform

apply(float[], float[]) - Method in class net.imglib2.realtransform.PositionFieldTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PositionFieldTransform

apply(double[], double[]) - Method in interface net.imglib2.realtransform.RealTransform

Apply the RealTransform to a source vector to obtain a target vector.

apply(float[], float[]) - Method in interface net.imglib2.realtransform.RealTransform

Deprecated.

use double precision instead

apply(RealLocalizable, RealPositionable) - Method in interface net.imglib2.realtransform.RealTransform

Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.

apply() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

apply() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess

apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D

apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale2D

apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D

apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale3D

apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaleAndTranslation

apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

apply(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

apply(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

apply(double[], double[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ThinplateSplineTransform

apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D

apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation2D

apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D

apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D

apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation3D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractScale

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractTranslation

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform2D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform3D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.HomographyTransform2D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InversePerspective3D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform

Deprecated.

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InverseRealTransform

applyInverse(double[], double[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform

Apply the inverse transform to a target vector to obtain a source vector.

applyInverse(float[], float[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform

Deprecated.

Use double precision instead

applyInverse(RealPositionable, RealLocalizable) - Method in interface net.imglib2.realtransform.InvertibleRealTransform

Apply the inverse transform to a target RealLocalizable to obtain a source RealPositionable.

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Perspective3D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale2D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale3D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaleAndTranslation

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation2D

applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D

applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D

applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation3D

armijoCondition(double, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Returns true if the armijo condition is satisfied.

B

BacktrackingLineSearch - Class in net.imglib2.realtransform.inverse

A generic backtracking line search to iteratively estimate the inverse of a RealTransform.

BacktrackingLineSearch(int) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch

BacktrackingLineSearch(DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch

backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

Perform backtracking line search.

backtrackingLineSearch(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Uses Backtracking Line search to determine a step size.

backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Uses Backtracking Line search to determine a step size.

bck(int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

bck(int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

bck(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

C

ClippedTransitionRealTransform - Class in net.imglib2.realtransform

A RealTransform that transitions between two n-dimensional RealTransforms.

ClippedTransitionRealTransform(RealTransform, RealTransform, double, double) - Constructor for class net.imglib2.realtransform.ClippedTransitionRealTransform

concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform

concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform2D

concatenate(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D

concatenate(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

concatenate(AffineTransform3D.AffineMatrix3D) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

concatenate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

concatenate(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D

concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform3D

concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale

concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale2D

concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale3D

concatenate(ScaleAndTranslationGet) - Method in class net.imglib2.realtransform.ScaleAndTranslation

concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation

concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation2D

concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation3D

constDs - Static variable in class net.imglib2.realtransform.Translation2D

constDs - Static variable in class net.imglib2.realtransform.Translation3D

copy() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

copy() - Method in class net.imglib2.realtransform.AbstractScale

copy() - Method in class net.imglib2.realtransform.AbstractTranslation

copy() - Method in interface net.imglib2.realtransform.AffineGet

copy() - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

copy() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

copy() - Method in class net.imglib2.realtransform.AffineTransform

copy() - Method in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

copy() - Method in class net.imglib2.realtransform.AffineTransform2D

copy() - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

copy() - Method in class net.imglib2.realtransform.AffineTransform3D

copy() - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

copy() - Method in class net.imglib2.realtransform.DisplacementFieldTransform

copy() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

copy() - Method in class net.imglib2.realtransform.HomographyTransform2D

copy() - Method in class net.imglib2.realtransform.InterpolatedRealTransform

copy() - Method in interface net.imglib2.realtransform.inverse.DifferentiableRealTransform

copy() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

copy() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

copy() - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

copy() - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

copy() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

copy() - Method in class net.imglib2.realtransform.InversePerspective3D

copy() - Method in class net.imglib2.realtransform.InverseRealTransform

copy() - Method in interface net.imglib2.realtransform.InvertibleRealTransform

copy() - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

copy() - Method in class net.imglib2.realtransform.Perspective3D

copy() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

copy() - Method in class net.imglib2.realtransform.PolynomialTransform2D

copy() - Method in class net.imglib2.realtransform.PositionFieldTransform

copy() - Method in class net.imglib2.realtransform.PositionRandomAccessible.PositionRandomAccess

copy() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible.RealPositionRealRandomAccess

copy() - Method in interface net.imglib2.realtransform.RealTransform

Create a deep copy of this RealTransform.

copy() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

copy() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess

copy() - Method in class net.imglib2.realtransform.RealTransformSequence

copy() - Method in class net.imglib2.realtransform.Scale

copy() - Method in class net.imglib2.realtransform.Scale2D

copy() - Method in class net.imglib2.realtransform.Scale3D

copy() - Method in class net.imglib2.realtransform.ScaleAndTranslation

copy() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet

copy() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

copy() - Method in interface net.imglib2.realtransform.ScaleGet

copy() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

copy() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

copy() - Method in class net.imglib2.realtransform.ThinplateSplineTransform

Create a copy of this ThinplateSplineTransform appropriate for use in concurrent code.

copy() - Method in class net.imglib2.realtransform.Translation

copy() - Method in class net.imglib2.realtransform.Translation2D

copy() - Method in class net.imglib2.realtransform.Translation3D

copy() - Method in interface net.imglib2.realtransform.TranslationGet

createDisplacementField(RealTransform, Interval, double[]) - Static method in class net.imglib2.realtransform.DisplacementFieldTransform

Creates a RandomAccessibleInterval of DoubleType containing the displacements of a DisplacementFieldTransform for a given RealTransform.

createDisplacementField(RealTransform, Interval, double[], double[]) - Static method in class net.imglib2.realtransform.DisplacementFieldTransform

Creates a RandomAccessibleInterval of DoubleType containing the displacements of a DisplacementFieldTransform for a given RealTransform.

createDisplacementField(RealTransform, Interval, double[], double[], Supplier<RealComposite<T>>) - Static method in class net.imglib2.realtransform.DisplacementFieldTransform

Creates a RandomAccessibleInterval containing the displacements of a DisplacementFieldTransform for a given RealTransform.

createDisplacementField(RealTransform, Interval, RealTransform, Supplier<RealComposite<T>>) - Static method in class net.imglib2.realtransform.DisplacementFieldTransform

Creates a RandomAccessibleInterval containing the displacements of a DisplacementFieldTransform for a given RealTransform.

createInverse() - Method in class net.imglib2.realtransform.ScaleAndTranslation

createPositionField(RealTransform, Interval, double[]) - Static method in class net.imglib2.realtransform.PositionFieldTransform

Creates a RandomAccessibleInterval of DoubleType containing the positions of a PositionFieldTransform for a given RealTransform.

createPositionField(RealTransform, Interval, double[], double[]) - Static method in class net.imglib2.realtransform.PositionFieldTransform

Creates a RandomAccessibleInterval of DoubleType containing the positions of a PositionFieldTransform for a given RealTransform.

createPositionField(RealTransform, Interval, double[], double[], Supplier<RealComposite<T>>) - Static method in class net.imglib2.realtransform.PositionFieldTransform

Creates a RandomAccessibleInterval containing the positions of a PositionFieldTransform for a given RealTransform.

createPositionField(RealTransform, Interval, RealTransform, Supplier<RealComposite<T>>) - Static method in class net.imglib2.realtransform.PositionFieldTransform

Creates a RandomAccessibleInterval containing the positions of a PositionFieldTransform for a given RealTransform.

D

d(int) - Method in class net.imglib2.realtransform.AbstractAffineTransform

d(int) - Method in class net.imglib2.realtransform.AbstractScale

d(int) - Method in class net.imglib2.realtransform.AbstractTranslation

d(int) - Method in interface net.imglib2.realtransform.AffineGet

Get the constant partial differential vector for dimension d.

d(int) - Method in class net.imglib2.realtransform.AffineTransform2D

d(int) - Method in class net.imglib2.realtransform.AffineTransform3D

d(int) - Method in class net.imglib2.realtransform.ScaleAndTranslation

d0 - Variable in class net.imglib2.realtransform.AffineTransform2D

d0 - Variable in class net.imglib2.realtransform.AffineTransform3D

d1 - Variable in class net.imglib2.realtransform.AffineTransform2D

d1 - Variable in class net.imglib2.realtransform.AffineTransform3D

d2 - Variable in class net.imglib2.realtransform.AffineTransform3D

DeformationFieldTransform - Class in net.imglib2.realtransform

Deprecated.

Use DisplacementFieldTransform instead because it is a displacement field

DeformationFieldTransform(RealRandomAccess<? extends RealLocalizable>) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform

Deprecated.

DeformationFieldTransform(RealRandomAccessible<? extends RealLocalizable>) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform

Deprecated.

DeformationFieldTransform(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform

Deprecated.

det() - Method in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

det() - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

DifferentiableRealTransform - Interface in net.imglib2.realtransform.inverse

Transformation that can explicitly compute its derivative (jacobian).

differentiableTransform - Variable in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

directionToward(double[], double[], double[]) - Method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform

Writes the direction displacement in which to move the input source point x in order that F( x + d ) is closer to the destination point y than F( x ).

directionToward(AffineTransform, double[], double[], double[]) - Static method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform

directionToward(double[], double[], double[]) - Method in interface net.imglib2.realtransform.inverse.DifferentiableRealTransform

Writes the direction displacement in which to move the input source point x in order that F( x + d ) is closer to the destination point y than F( x ).

dirMag() - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

DisplacementFieldTransform - Class in net.imglib2.realtransform

A RealTransform by continuous offset lookup.

DisplacementFieldTransform(RealRandomAccess<? extends RealLocalizable>) - Constructor for class net.imglib2.realtransform.DisplacementFieldTransform

DisplacementFieldTransform(RealRandomAccessible<? extends RealLocalizable>) - Constructor for class net.imglib2.realtransform.DisplacementFieldTransform

DisplacementFieldTransform(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.realtransform.DisplacementFieldTransform

DisplacementFieldTransform(RandomAccessibleInterval<T>, AffineGet) - Constructor for class net.imglib2.realtransform.DisplacementFieldTransform

DisplacementFieldTransform(RandomAccessibleInterval<T>, double...) - Constructor for class net.imglib2.realtransform.DisplacementFieldTransform

DisplacementFieldTransform(RandomAccessibleInterval<T>, double[], double[]) - Constructor for class net.imglib2.realtransform.DisplacementFieldTransform

ds - Variable in class net.imglib2.realtransform.AbstractAffineTransform

ds - Variable in class net.imglib2.realtransform.AbstractScale

ds - Variable in class net.imglib2.realtransform.AbstractTranslation

ds - Variable in class net.imglib2.realtransform.AffineTransform2D

ds - Variable in class net.imglib2.realtransform.AffineTransform3D

dxfm - Variable in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

E

epsilon - Variable in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

estimateBounds(RealInterval) - Method in class net.imglib2.realtransform.AffineTransform2D

Calculate the boundary interval of an interval after it has been transformed.

estimateBounds(RealInterval) - Method in class net.imglib2.realtransform.AffineTransform3D

Calculate the boundary interval of an interval after it has been transformed.

ExplicitInvertibleRealTransform - Class in net.imglib2.realtransform

An InvertibleRealTransform for which the forward and inverse transforms are explicitly given as RealTransforms.

ExplicitInvertibleRealTransform(RealTransform, RealTransform) - Constructor for class net.imglib2.realtransform.ExplicitInvertibleRealTransform

Creates a new ExplicitInvertibleRealTransform.

F

forwardTransform - Variable in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

fwd(int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

fwd(int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

fwd(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

G

get(int, int) - Method in class net.imglib2.realtransform.AbstractAffineTransform

get(int, int) - Method in class net.imglib2.realtransform.AbstractScale

get(int, int) - Method in class net.imglib2.realtransform.AbstractTranslation

get(int, int) - Method in interface net.imglib2.realtransform.AffineGet

Get a field of the n×(n+1) affine transformation matrix.

get() - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

get() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

get(int, int) - Method in class net.imglib2.realtransform.AffineTransform2D

get(int, int) - Method in class net.imglib2.realtransform.AffineTransform3D

get() - Method in class net.imglib2.realtransform.PositionRandomAccessible.PositionRandomAccess

get() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible.RealPositionRealRandomAccess

get() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

get() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess

get(int, int) - Method in class net.imglib2.realtransform.Scale2D

get(int, int) - Method in class net.imglib2.realtransform.Scale3D

get(int, int) - Method in class net.imglib2.realtransform.ScaleAndTranslation

get() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

getConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform

getConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform2D

getConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform3D

getConcatenableClass() - Method in class net.imglib2.realtransform.Scale

getConcatenableClass() - Method in class net.imglib2.realtransform.Scale2D

getConcatenableClass() - Method in class net.imglib2.realtransform.Scale3D

getConcatenableClass() - Method in class net.imglib2.realtransform.ScaleAndTranslation

getConcatenableClass() - Method in class net.imglib2.realtransform.Translation

getConcatenableClass() - Method in class net.imglib2.realtransform.Translation2D

getConcatenableClass() - Method in class net.imglib2.realtransform.Translation3D

getDirection() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

getDoublePosition(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

getError() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

getErrorVector() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

getEstimate() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

getFloatPosition(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

getInstance() - Static method in class net.imglib2.realtransform.InversePerspective3D

getInstance() - Static method in class net.imglib2.realtransform.Perspective3D

getInstance() - Static method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

getKernelTransform() - Method in class net.imglib2.realtransform.ThinplateSplineTransform

Returns the instance of the wrapped ThinPlateR2LogRSplineKernelTransform.

getLastError() - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

getLastSquaredError() - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

getOptimzer() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

getPreConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform

getPreConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform2D

getPreConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform3D

getPreConcatenableClass() - Method in class net.imglib2.realtransform.Scale

getPreConcatenableClass() - Method in class net.imglib2.realtransform.Scale2D

getPreConcatenableClass() - Method in class net.imglib2.realtransform.Scale3D

getPreConcatenableClass() - Method in class net.imglib2.realtransform.ScaleAndTranslation

getPreConcatenableClass() - Method in class net.imglib2.realtransform.Translation

getPreConcatenableClass() - Method in class net.imglib2.realtransform.Translation2D

getPreConcatenableClass() - Method in class net.imglib2.realtransform.Translation3D

getRowPackedCopy() - Method in class net.imglib2.realtransform.AbstractAffineTransform

getRowPackedCopy() - Method in class net.imglib2.realtransform.AbstractScale

getRowPackedCopy() - Method in class net.imglib2.realtransform.AbstractTranslation

getRowPackedCopy() - Method in interface net.imglib2.realtransform.AffineGet

Get a copy of the n×(n+1) affine transformation matrix as a row packed array similar to Jama.

getRowPackedCopy() - Method in class net.imglib2.realtransform.AffineTransform2D

getRowPackedCopy() - Method in class net.imglib2.realtransform.AffineTransform3D

getRowPackedCopy() - Method in class net.imglib2.realtransform.Scale2D

getRowPackedCopy() - Method in class net.imglib2.realtransform.Scale3D

getRowPackedCopy() - Method in class net.imglib2.realtransform.ScaleAndTranslation

getRowPackedCopy() - Method in class net.imglib2.realtransform.Translation2D

getRowPackedCopy() - Method in class net.imglib2.realtransform.Translation3D

getScale(int) - Method in class net.imglib2.realtransform.AbstractScale

getScale(int) - Method in class net.imglib2.realtransform.AbstractTranslation

getScale(int) - Method in class net.imglib2.realtransform.ScaleAndTranslation

getScale(int) - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet

Get a field of the n-dimensional scale vector.

getScaleCopy() - Method in class net.imglib2.realtransform.AbstractScale

getScaleCopy() - Method in class net.imglib2.realtransform.AbstractTranslation

getScaleCopy() - Method in class net.imglib2.realtransform.ScaleAndTranslation

getScaleCopy() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet

Get a copy of the n-dimensional scale vector.

getSource() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible

getTransform() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

getTransformToSource() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible

getTranslation(int) - Method in class net.imglib2.realtransform.AbstractScale

getTranslation(int) - Method in class net.imglib2.realtransform.AbstractTranslation

getTranslation() - Method in class net.imglib2.realtransform.AffineTransform3D

Initialize the translation with a given vector

getTranslation(int) - Method in class net.imglib2.realtransform.ScaleAndTranslation

getTranslation(int) - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet

Get a field of the n-dimensionsional translation vector.

getTranslationCopy() - Method in class net.imglib2.realtransform.AbstractScale

getTranslationCopy() - Method in class net.imglib2.realtransform.AbstractTranslation

getTranslationCopy() - Method in class net.imglib2.realtransform.ScaleAndTranslation

getTranslationCopy() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet

Get a copy of the n-dimensionsional translation vector.

H

HomographyTransform2D - Class in net.imglib2.realtransform

2D-homography RealTransform to be applied to points in 2D-space.

HomographyTransform2D() - Constructor for class net.imglib2.realtransform.HomographyTransform2D

I

i00 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i01 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i02 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i10 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i11 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i12 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i20 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i21 - Variable in class net.imglib2.realtransform.HomographyTransform2D

i22 - Variable in class net.imglib2.realtransform.HomographyTransform2D

identity() - Method in class net.imglib2.realtransform.AffineTransform3D

Set to identity transform

instance - Static variable in class net.imglib2.realtransform.InversePerspective3D

instance - Static variable in class net.imglib2.realtransform.Perspective3D

InterpolatedRealTransform - Class in net.imglib2.realtransform

A RealTransform that linearly interpolates between two RealTransforms.

InterpolatedRealTransform(RealTransform, RealTransform, double) - Constructor for class net.imglib2.realtransform.InterpolatedRealTransform

inverse() - Method in class net.imglib2.realtransform.AbstractScale

inverse() - Method in class net.imglib2.realtransform.AbstractTranslation

inverse() - Method in interface net.imglib2.realtransform.AffineGet

inverse - Variable in class net.imglib2.realtransform.AffineTransform

inverse() - Method in class net.imglib2.realtransform.AffineTransform

inverse - Variable in class net.imglib2.realtransform.AffineTransform2D

inverse() - Method in class net.imglib2.realtransform.AffineTransform2D

inverse - Variable in class net.imglib2.realtransform.AffineTransform3D

inverse() - Method in class net.imglib2.realtransform.AffineTransform3D

inverse() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

inverse() - Method in class net.imglib2.realtransform.HomographyTransform2D

inverse() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

inverse() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

inverse() - Method in class net.imglib2.realtransform.InversePerspective3D

inverse() - Method in class net.imglib2.realtransform.InverseRealTransform

inverse() - Method in interface net.imglib2.realtransform.InvertibleRealTransform

Get the inverse transform.

inverse() - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence

inverse() - Method in class net.imglib2.realtransform.Perspective3D

inverse() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

inverse - Variable in class net.imglib2.realtransform.Scale

inverse() - Method in class net.imglib2.realtransform.Scale

inverse - Variable in class net.imglib2.realtransform.Scale2D

inverse() - Method in class net.imglib2.realtransform.Scale2D

inverse - Variable in class net.imglib2.realtransform.Scale3D

inverse() - Method in class net.imglib2.realtransform.Scale3D

inverse() - Method in class net.imglib2.realtransform.ScaleAndTranslation

inverse() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet

inverse() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

inverse() - Method in interface net.imglib2.realtransform.ScaleGet

inverse() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

inverse - Variable in class net.imglib2.realtransform.Translation

inverse() - Method in class net.imglib2.realtransform.Translation

inverse - Variable in class net.imglib2.realtransform.Translation2D

inverse() - Method in class net.imglib2.realtransform.Translation2D

inverse - Variable in class net.imglib2.realtransform.Translation3D

inverse() - Method in class net.imglib2.realtransform.Translation3D

inverse() - Method in interface net.imglib2.realtransform.TranslationGet

InversePerspective3D - Class in net.imglib2.realtransform

3d inverse perspective transformation.

InverseRealTransform - Class in net.imglib2.realtransform

Final implementation of the inverse of an InvertibleRealTransform that simply replaces apply by applyInverse and conversely.

InverseRealTransform(InvertibleRealTransform) - Constructor for class net.imglib2.realtransform.InverseRealTransform

InverseRealTransformGradientDescent - Class in net.imglib2.realtransform.inverse

InverseRealTransformGradientDescent(int, DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

inverseTol(double[], double[], double, int) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

inverseTransform - Variable in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

invert() - Method in class net.imglib2.realtransform.AffineTransform

invert() - Method in class net.imglib2.realtransform.AffineTransform2D

invert() - Method in class net.imglib2.realtransform.AffineTransform3D

InvertibleDeformationFieldTransform - Class in net.imglib2.realtransform

Deprecated.

use InvertibleDisplacementFieldTransform instead

InvertibleDeformationFieldTransform(DisplacementFieldTransform) - Constructor for class net.imglib2.realtransform.InvertibleDeformationFieldTransform

Deprecated.

InvertibleDisplacementFieldTransform - Class in net.imglib2.realtransform

InvertibleDisplacementFieldTransform(DisplacementFieldTransform) - Constructor for class net.imglib2.realtransform.InvertibleDisplacementFieldTransform

InvertibleRealTransform - Interface in net.imglib2.realtransform

Invertible transformation from Rⁿ to R^m .

InvertibleRealTransformSequence - Class in net.imglib2.realtransform

An InvertibleRealTransform that is a sequence of InvertibleRealTransforms.

InvertibleRealTransformSequence() - Constructor for class net.imglib2.realtransform.InvertibleRealTransformSequence

InvertibleTransformByGradientDescent - Class in net.imglib2.realtransform.inverse

Use gradient descent to iteratively estimate the inverse of a differentiable forward transformation.

InvertibleTransformByGradientDescent(DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

InvertibleTransformByGradientDescent(DifferentiableRealTransform, boolean) - Constructor for class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

InvertibleTransformByGradientDescent(DifferentiableRealTransform, BacktrackingLineSearch, boolean) - Constructor for class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

invertT() - Method in class net.imglib2.realtransform.AffineTransform

isExclusiveScale(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils

isExclusiveScaleAndTranslation(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils

isExlusiveTranslation(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils

isIdentity() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

Returns true if either the sequence is empty, or if every transform in the sequence returns true for isIdentity.

isIdentity() - Method in class net.imglib2.realtransform.AffineTransform

isIdentity() - Method in class net.imglib2.realtransform.AffineTransform2D

isIdentity() - Method in class net.imglib2.realtransform.AffineTransform3D

isIdentity() - Method in interface net.imglib2.realtransform.RealTransform

Check if the RealTransform is identity.

isIdentity(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils

isIdentity() - Method in class net.imglib2.realtransform.Scale

isIdentity() - Method in class net.imglib2.realtransform.Scale2D

isIdentity() - Method in class net.imglib2.realtransform.Scale3D

isIdentity() - Method in class net.imglib2.realtransform.ScaleAndTranslation

isIdentity() - Method in class net.imglib2.realtransform.Translation

isIdentity() - Method in class net.imglib2.realtransform.Translation2D

isIdentity() - Method in class net.imglib2.realtransform.Translation3D

iterativeInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

Find the source point that, when pushed through the forward transform, results in the given destination point.

J

jacobian(double[]) - Method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform

Returns the jacobian matrix of this transform at the point x.

jacobian(double[]) - Method in interface net.imglib2.realtransform.inverse.DifferentiableRealTransform

Returns the jacobian matrix of this transform at the point x.

jacobian - Variable in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

jacobian(double[]) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

Estimates the jacobian matrix at x of the wrapped RealTransform.

jacobian(double[]) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

Returns the jacobian matrix of this transform at the point x.

jacobian(double[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform

L

localize(float[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

localize(double[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

logger - Static variable in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

logger - Static variable in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

M

m00 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

m00 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m00 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m01 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

m01 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m01 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m02 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

m02 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m02 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m03 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m10 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

m10 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m10 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m11 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

m11 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m11 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m12 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D

m12 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m12 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m13 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m20 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m20 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m21 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m21 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m22 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

m22 - Variable in class net.imglib2.realtransform.HomographyTransform2D

m23 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

matrixTranspose(AffineTransform) - Static method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform

move(long, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

move(int, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

move(Localizable) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

move(int[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

move(long[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

move(float, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(double, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(RealLocalizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(float[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(double[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(int, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(long, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(Localizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(int[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(long[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

move(float, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(double, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(RealLocalizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(float[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(double[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(int, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(long, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(Localizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(int[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

move(long[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

N

n - Variable in class net.imglib2.realtransform.AbstractAffineTransform

net.imglib2.realtransform - package net.imglib2.realtransform

net.imglib2.realtransform.inverse - package net.imglib2.realtransform.inverse

nSource - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence

nTarget - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence

numDimensions() - Method in class net.imglib2.realtransform.AbstractAffineTransform

numDimensions() - Method in class net.imglib2.realtransform.AbstractScale

numDimensions() - Method in class net.imglib2.realtransform.AbstractTranslation

numDimensions() - Method in class net.imglib2.realtransform.AffineTransform2D

numDimensions() - Method in class net.imglib2.realtransform.AffineTransform3D

numDimensions() - Method in class net.imglib2.realtransform.InversePerspective3D

numDimensions() - Method in class net.imglib2.realtransform.Perspective3D

numDimensions() - Method in class net.imglib2.realtransform.PositionRandomAccessible

numDimensions() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible

numDimensions() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible

numDimensions() - Method in class net.imglib2.realtransform.ScaleAndTranslation

numDimensions - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible

numDimensions() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible

numDimensions() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

numPolTerms(int) - Static method in class net.imglib2.realtransform.PolynomialTransform2D

Calculate the number of polynomial terms for a 2d polynomial transform of given order.

numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractAffineTransform

numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractScale

numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractTranslation

numSourceDimensions() - Method in class net.imglib2.realtransform.AffineTransform2D

numSourceDimensions() - Method in class net.imglib2.realtransform.AffineTransform3D

numSourceDimensions() - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

numSourceDimensions() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

numSourceDimensions() - Method in class net.imglib2.realtransform.HomographyTransform2D

numSourceDimensions() - Method in class net.imglib2.realtransform.InterpolatedRealTransform

numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

numSourceDimensions() - Method in class net.imglib2.realtransform.InversePerspective3D

numSourceDimensions() - Method in class net.imglib2.realtransform.InverseRealTransform

numSourceDimensions() - Method in class net.imglib2.realtransform.Perspective3D

numSourceDimensions() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

numSourceDimensions() - Method in class net.imglib2.realtransform.PolynomialTransform2D

numSourceDimensions() - Method in class net.imglib2.realtransform.PositionFieldTransform

numSourceDimensions() - Method in interface net.imglib2.realtransform.RealTransform

Returns n, the minimal number of dimension of the source vector.

numSourceDimensions() - Method in class net.imglib2.realtransform.ScaleAndTranslation

numSourceDimensions() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

numSourceDimensions() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

numSourceDimensions() - Method in class net.imglib2.realtransform.ThinplateSplineTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractAffineTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence

numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractScale

numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractTranslation

numTargetDimensions() - Method in class net.imglib2.realtransform.AffineTransform2D

numTargetDimensions() - Method in class net.imglib2.realtransform.AffineTransform3D

numTargetDimensions() - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform

numTargetDimensions - Variable in class net.imglib2.realtransform.DisplacementFieldTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.DisplacementFieldTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.HomographyTransform2D

numTargetDimensions() - Method in class net.imglib2.realtransform.InterpolatedRealTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent

numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.InversePerspective3D

numTargetDimensions() - Method in class net.imglib2.realtransform.InverseRealTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.Perspective3D

numTargetDimensions() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D

numTargetDimensions() - Method in class net.imglib2.realtransform.PolynomialTransform2D

numTargetDimensions - Variable in class net.imglib2.realtransform.PositionFieldTransform

numTargetDimensions() - Method in class net.imglib2.realtransform.PositionFieldTransform

numTargetDimensions() - Method in interface net.imglib2.realtransform.RealTransform

Returns m, the minimal dimension of the target vector.

numTargetDimensions() - Method in class net.imglib2.realtransform.ScaleAndTranslation

numTargetDimensions() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

numTargetDimensions() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D

numTargetDimensions() - Method in class net.imglib2.realtransform.ThinplateSplineTransform

O

order - Variable in class net.imglib2.realtransform.PolynomialTransform2D

order of the polynomial transform

orderOf(int) - Static method in class net.imglib2.realtransform.PolynomialTransform2D

Calculate the maximum order of a polynom whose number of polyynomial terms is smaller or equal a given number.

P

Perspective3D - Class in net.imglib2.realtransform

3d perspective transformation.

Perspective3D() - Constructor for class net.imglib2.realtransform.Perspective3D

PolarToCartesianTransform2D - Class in net.imglib2.realtransform

Transforms 2D polar to cartesian coordinates.

PolarToCartesianTransform2D() - Constructor for class net.imglib2.realtransform.PolarToCartesianTransform2D

polTerms - Variable in class net.imglib2.realtransform.PolynomialTransform2D

register to hold all polynomial terms during applyInPlace following the order specified at http://bishopw.loni.ucla.edu/AIR5/2Dnonlinear.html#polylist excluding 1 because we want to avoid repeated multiplication with 1

PolynomialTransform2D - Class in net.imglib2.realtransform

A 2D polynomial transform of n-th order.

PolynomialTransform2D() - Constructor for class net.imglib2.realtransform.PolynomialTransform2D

populateTerms(double, double) - Method in class net.imglib2.realtransform.PolynomialTransform2D

PositionFieldTransform - Class in net.imglib2.realtransform

A RealTransform by continuous coordinate lookup.

PositionFieldTransform(RealRandomAccess<? extends RealLocalizable>) - Constructor for class net.imglib2.realtransform.PositionFieldTransform

PositionFieldTransform(RealRandomAccessible<? extends RealLocalizable>) - Constructor for class net.imglib2.realtransform.PositionFieldTransform

PositionFieldTransform(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.realtransform.PositionFieldTransform

PositionFieldTransform(RandomAccessibleInterval<T>, AffineGet) - Constructor for class net.imglib2.realtransform.PositionFieldTransform

PositionFieldTransform(RandomAccessibleInterval<T>, double...) - Constructor for class net.imglib2.realtransform.PositionFieldTransform

PositionFieldTransform(RandomAccessibleInterval<T>, double[], double[]) - Constructor for class net.imglib2.realtransform.PositionFieldTransform

PositionRandomAccess() - Constructor for class net.imglib2.realtransform.PositionRandomAccessible.PositionRandomAccess

PositionRandomAccessible - Class in net.imglib2.realtransform

A RandomAccessible over the d-th position of discrete coordinate space.

PositionRandomAccessible(int, int) - Constructor for class net.imglib2.realtransform.PositionRandomAccessible

PositionRandomAccessible.PositionRandomAccess - Class in net.imglib2.realtransform

preConcatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform

preConcatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform2D

preConcatenate(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D

preConcatenate(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

preConcatenate(AffineTransform3D.AffineMatrix3D) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

preConcatenate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

preConcatenate(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D

preConcatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform3D

preConcatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale

preConcatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale2D

preConcatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale3D

preConcatenate(ScaleAndTranslationGet) - Method in class net.imglib2.realtransform.ScaleAndTranslation

preConcatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation

preConcatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation2D

preConcatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation3D

printTerms() - Method in class net.imglib2.realtransform.PolynomialTransform2D

ptmp - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence

R

randomAccess() - Method in class net.imglib2.realtransform.AffineRandomAccessible

randomAccess(Interval) - Method in class net.imglib2.realtransform.AffineRandomAccessible

To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.

randomAccess() - Method in class net.imglib2.realtransform.PositionRandomAccessible

randomAccess(Interval) - Method in class net.imglib2.realtransform.PositionRandomAccessible

randomAccess() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible

randomAccess(Interval) - Method in class net.imglib2.realtransform.RealTransformRandomAccessible

To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.

RealPositionRealRandomAccess() - Constructor for class net.imglib2.realtransform.RealPositionRealRandomAccessible.RealPositionRealRandomAccess

RealPositionRealRandomAccessible - Class in net.imglib2.realtransform

A RealRandomAccessible over the d-th position of real coordinate space.

RealPositionRealRandomAccessible(int, int) - Constructor for class net.imglib2.realtransform.RealPositionRealRandomAccessible

RealPositionRealRandomAccessible.RealPositionRealRandomAccess - Class in net.imglib2.realtransform

realRandomAccess() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible

realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible

To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.

realRandomAccess() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible

realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible

realRandomAccess() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible

realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible

To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.

realRandomAccess() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible

realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible

To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.

RealTransform - Interface in net.imglib2.realtransform

Transformation from Rⁿ to R^m.

RealTransformFiniteDerivatives - Class in net.imglib2.realtransform.inverse

Use finite differences to estimate the jacobian of an arbitrary RealTransform.

RealTransformFiniteDerivatives(RealTransform) - Constructor for class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

RealTransformRandomAccess() - Constructor for class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

RealTransformRandomAccess(RealTransformRandomAccessible<T, R>.RealTransformRandomAccess) - Constructor for class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

RealTransformRandomAccessible<T,R extends RealTransform> - Class in net.imglib2.realtransform

A RandomAccessible whose samples are generated by rasterizing a RealRandomAccessible transformed by a RealTransform.

RealTransformRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.RealTransformRandomAccessible

RealTransformRandomAccessible.RealTransformRandomAccess - Class in net.imglib2.realtransform

RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.

RealTransformRealRandomAccess() - Constructor for class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess

RealTransformRealRandomAccessible<T,R extends RealTransform> - Class in net.imglib2.realtransform

A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an RealTransform.

RealTransformRealRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.RealTransformRealRandomAccessible

RealTransformRealRandomAccessible.RealTransformRealRandomAccess - Class in net.imglib2.realtransform

RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.

RealTransformSequence - Class in net.imglib2.realtransform

A sequence of RealTransforms.

RealTransformSequence() - Constructor for class net.imglib2.realtransform.RealTransformSequence

RealViews - Class in net.imglib2.realtransform

Convenience factory methods for RealRandomAccessibles transformed in real coordinate space by InvertibleRealTransforms.

RealViews() - Constructor for class net.imglib2.realtransform.RealViews

RealViewsSimplifyUtils - Class in net.imglib2.realtransform

RealViewsSimplifyUtils() - Constructor for class net.imglib2.realtransform.RealViewsSimplifyUtils

RegularizedDifferentiableRealTransform - Class in net.imglib2.realtransform.inverse

Wraps and regularizes a DifferentiableRealTransform.

RegularizedDifferentiableRealTransform(DifferentiableRealTransform, double) - Constructor for class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform

regularizeJacobian() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

Changes jacobian (J) to be: ( 1-eps ) * J + ( eps ) * I note jacRegMatrix = eps * I

rotate(double) - Method in class net.imglib2.realtransform.AffineTransform2D

Rotate

rotate(int, double) - Method in class net.imglib2.realtransform.AffineTransform3D

Rotate

rotateX(double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

rotateY(double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

rotateZ(double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

S

s - Variable in class net.imglib2.realtransform.AbstractScale

scale(double) - Method in class net.imglib2.realtransform.AffineTransform2D

Scale

scale(double, double) - Method in class net.imglib2.realtransform.AffineTransform2D

Scale

scale(double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

scale(double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D

scale(double) - Method in class net.imglib2.realtransform.AffineTransform3D

Scale

scale(double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D

Scale

Scale - Class in net.imglib2.realtransform

n-d arbitrary scaling.

Scale(double[], Scale, RealPoint[]) - Constructor for class net.imglib2.realtransform.Scale

Scale(double...) - Constructor for class net.imglib2.realtransform.Scale

Scale2D - Class in net.imglib2.realtransform

2-d arbitrary scaling.

Scale2D(double[], Scale2D, RealPoint[]) - Constructor for class net.imglib2.realtransform.Scale2D

Scale2D(double, double) - Constructor for class net.imglib2.realtransform.Scale2D

Scale2D(double...) - Constructor for class net.imglib2.realtransform.Scale2D

Scale3D - Class in net.imglib2.realtransform

3-d arbitrary scaling.

Scale3D(double[], Scale3D, RealPoint[]) - Constructor for class net.imglib2.realtransform.Scale3D

Scale3D(double, double, double) - Constructor for class net.imglib2.realtransform.Scale3D

Scale3D(double...) - Constructor for class net.imglib2.realtransform.Scale3D

ScaleAndTranslation - Class in net.imglib2.realtransform

An n transform that applies a scaling first and then shifts coordinates.

ScaleAndTranslation(double[], double[]) - Constructor for class net.imglib2.realtransform.ScaleAndTranslation

ScaleAndTranslationGet - Interface in net.imglib2.realtransform

An n transform that applies a scaling first and then shifts coordinates.

ScaledPolarToTranslatedCartesianTransform2D - Class in net.imglib2.realtransform

Transforms scaled polar to translated cartesian coordinates.

ScaledPolarToTranslatedCartesianTransform2D(double, double, double, double) - Constructor for class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D

ScaleGet - Interface in net.imglib2.realtransform

An n-dimensional scale whose fields can be accessed through their dimension index or as a double array.

scaleMove(double, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

set(double...) - Method in class net.imglib2.realtransform.AbstractScale

Set the scale vector.

set(double...) - Method in class net.imglib2.realtransform.AbstractTranslation

Set the translation vector.

set(double, int) - Method in class net.imglib2.realtransform.AbstractTranslation

Set one value of the translation vector.

set(double, int, int) - Method in interface net.imglib2.realtransform.AffineSet

Set a field of the n×(n+1) affine transformation matrix.

set(double...) - Method in interface net.imglib2.realtransform.AffineSet

Set the n×(n+1) affine transformation matrix with row packed double values.

set(double[][]) - Method in interface net.imglib2.realtransform.AffineSet

Set the n×(n+1) affine transformation matrix with double values from a [row][column] addressed array.

set(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform

set(double[][]) - Method in class net.imglib2.realtransform.AffineTransform

set(double, int, int) - Method in class net.imglib2.realtransform.AffineTransform

set(double...) - Method in class net.imglib2.realtransform.AffineTransform

set(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D

set(double, int, int) - Method in class net.imglib2.realtransform.AffineTransform2D

set(double...) - Method in class net.imglib2.realtransform.AffineTransform2D

set(double[][]) - Method in class net.imglib2.realtransform.AffineTransform2D

set(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D

set(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D

Set the affine matrix to:

set(double, int, int) - Method in class net.imglib2.realtransform.AffineTransform3D

set(double...) - Method in class net.imglib2.realtransform.AffineTransform3D

set(double[][]) - Method in class net.imglib2.realtransform.AffineTransform3D

set(double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.HomographyTransform2D

set(HomographyTransform2D) - Method in class net.imglib2.realtransform.HomographyTransform2D

set(double...) - Method in class net.imglib2.realtransform.PolynomialTransform2D

Set the coefficients.

set(double...) - Method in class net.imglib2.realtransform.Scale

set(double, double) - Method in class net.imglib2.realtransform.Scale2D

set(double...) - Method in class net.imglib2.realtransform.Scale2D

set(double, double, double) - Method in class net.imglib2.realtransform.Scale3D

set(double...) - Method in class net.imglib2.realtransform.Scale3D

set(double...) - Method in class net.imglib2.realtransform.Translation

Set the translation vector.

set(double, int) - Method in class net.imglib2.realtransform.Translation

Set one value of the translation vector.

set(double, double) - Method in class net.imglib2.realtransform.Translation2D

set(double...) - Method in class net.imglib2.realtransform.Translation2D

Set the translation vector.

set(double, int) - Method in class net.imglib2.realtransform.Translation2D

set(double, double, double) - Method in class net.imglib2.realtransform.Translation3D

set(double...) - Method in class net.imglib2.realtransform.Translation3D

Set the translation vector.

set(double, int) - Method in class net.imglib2.realtransform.Translation3D

setBeta(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setBeta(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setC(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setC(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setDirection(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setEpsilon(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setEstimate(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setEstimate(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setEstimateXfm(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setFixZ(boolean) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setForwardTransform(DifferentiableRealTransform) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setGuess(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setInitStep(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setJacobianEstimateStep(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setJacobianRegularizationEps(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setLambda(double) - Method in class net.imglib2.realtransform.InterpolatedRealTransform

setMaxIterations(int) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setMaxIters(int) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setMaxLineSearchTries(int) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setMaxStep(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setMinStep(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setPosition(int[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

setPosition(long[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

setPosition(int, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

setPosition(long, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

setPosition(Localizable) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess

setPosition(RealLocalizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(float[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(double[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(float, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(double, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(Localizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(int[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(long[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(int, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(long, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess

setPosition(RealLocalizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(float[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(double[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(float, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(double, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(Localizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(int[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(long[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(int, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setPosition(long, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

setStep(double) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

setStepSize(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setStepSizeMaxTries(int) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setTarget(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

setTarget(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setTolerance(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

setTranslation(double...) - Method in class net.imglib2.realtransform.AffineTransform3D

Initialize the translation with a given vector

simplify(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews

Simplifies all RealTransforms which are wrapped in the source RealRandomAccessible.

simplify(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils

See RealViewsRealViewsSimplifyUtils.simplify(RealRandomAccessible)

simplifyReal(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews

Simplifies all RealTransforms which are wrapped in the source RealRandomAccessible.

simplifyReal(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils

See RealViewsRealViewsSimplifyUtils.simplifyReal(RealRandomAccessible)

simplifyRealTransform(RealTransform) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils

source - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible

source - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible

sourceAccess - Variable in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

sourceAccess - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess

sourceAccess - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

sourceNumDimensions - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible

SphericalToCartesianTransform3D - Class in net.imglib2.realtransform

Transforms 3D spherical to cartesian coordinates.

squaredError(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

Compute the squared error between this estimate and the target.

squaredError(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

squaredErrorAt(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch

Compute the squared error between the destination of the input source point and the target.

StackingRealRandomAccess() - Constructor for class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess

StackingRealRandomAccessible<T> - Class in net.imglib2.realtransform

A RealRandomAccessible whose samples are generated by trivial projection of the lower dimensional source into a higher dimensional target by continuous stacking, i.e.

StackingRealRandomAccessible(RealRandomAccessible<T>, int) - Constructor for class net.imglib2.realtransform.StackingRealRandomAccessible

StackingRealRandomAccessible.StackingRealRandomAccess - Class in net.imglib2.realtransform

RealRandomAccess that generates its samples from a lower dimensional source

step - Variable in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

sumSquaredErrors(double[], double[]) - Static method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

T

t - Variable in class net.imglib2.realtransform.AbstractAffineTransform

t - Variable in class net.imglib2.realtransform.AbstractTranslation

ThinplateSplineTransform - Class in net.imglib2.realtransform

An n-dimensional thin plate spline transform backed by John Bogovic's jitk-tps library.

ThinplateSplineTransform(ThinPlateR2LogRSplineKernelTransform) - Constructor for class net.imglib2.realtransform.ThinplateSplineTransform

ThinplateSplineTransform(double[][], double[][]) - Constructor for class net.imglib2.realtransform.ThinplateSplineTransform

tmp - Variable in class net.imglib2.realtransform.AbstractAffineTransform

tmp - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence

toArray(double[]) - Method in class net.imglib2.realtransform.AffineTransform2D

toArray(double[]) - Method in class net.imglib2.realtransform.AffineTransform3D

toMatrix(double[][]) - Method in class net.imglib2.realtransform.AffineTransform2D

toMatrix(double[][]) - Method in class net.imglib2.realtransform.AffineTransform3D

toString() - Method in class net.imglib2.realtransform.AffineTransform2D

toString() - Method in class net.imglib2.realtransform.AffineTransform3D

toString() - Method in class net.imglib2.realtransform.HomographyTransform2D

transform - Variable in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives

transform(RealRandomAccessible<T>, InvertibleRealTransform) - Static method in class net.imglib2.realtransform.RealViews

See a RealRandomAccessible as a RandomAccessible transformed by an InvertibleRealTransform.

transformCopy - Variable in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess

transformCopy - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess

transformReal(RealRandomAccessible<T>, InvertibleRealTransform) - Static method in class net.imglib2.realtransform.RealViews

See a RealRandomAccessible as transformed by an InvertibleRealTransform.

transforms - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence

transformToSource - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible

translate(double...) - Method in class net.imglib2.realtransform.AffineTransform2D

Translate

translate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D

Translation

Translation - Class in net.imglib2.realtransform

Translation(double[], Translation) - Constructor for class net.imglib2.realtransform.Translation

Translation(int) - Constructor for class net.imglib2.realtransform.Translation

Translation(double...) - Constructor for class net.imglib2.realtransform.Translation

Translation2D - Class in net.imglib2.realtransform

2-dimensional translation.

Translation2D(double[], Translation2D) - Constructor for class net.imglib2.realtransform.Translation2D

Translation2D() - Constructor for class net.imglib2.realtransform.Translation2D

Translation2D(double, double) - Constructor for class net.imglib2.realtransform.Translation2D

Translation2D(double...) - Constructor for class net.imglib2.realtransform.Translation2D

Translation3D - Class in net.imglib2.realtransform

3-dimensional translation.

Translation3D(double[], Translation3D) - Constructor for class net.imglib2.realtransform.Translation3D

Translation3D() - Constructor for class net.imglib2.realtransform.Translation3D

Translation3D(double, double, double) - Constructor for class net.imglib2.realtransform.Translation3D

Translation3D(double...) - Constructor for class net.imglib2.realtransform.Translation3D

TranslationGet - Interface in net.imglib2.realtransform

An n-dimensional translation vector whose fields can be accessed through their dimension index or as a double array.

U

updateDs() - Method in class net.imglib2.realtransform.AbstractAffineTransform

updateDs() - Method in class net.imglib2.realtransform.AffineTransform2D

updateDs() - Method in class net.imglib2.realtransform.AffineTransform3D

updateError() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

updateEstimate(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent

W

WrappedIterativeInvertibleRealTransform<T extends RealTransform> - Class in net.imglib2.realtransform.inverse

WrappedIterativeInvertibleRealTransform(T) - Constructor for class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform

A B C D E F G H I J L M N O P R S T U W