net.imglib2.realtransform

Class ThinplateSplineTransform

java.lang.Object

net.imglib2.realtransform.ThinplateSplineTransform

All Implemented Interfaces:

RealTransform

public class ThinplateSplineTransform
extends Object
implements RealTransform

An n-dimensional thin plate spline transform backed by John Bogovic's jitk-tps library.

Author:

Stephan Saalfeld

Constructor Summary

Constructors

Constructor and Description
ThinplateSplineTransform(double[][] p, double[][] q)
ThinplateSplineTransform(ThinPlateR2LogRSplineKernelTransform tps)

Method Summary

Modifier and Type	Method and Description
void	apply(double[] source, double[] target) Apply the RealTransform to a source vector to obtain a target vector.
void	apply(RealLocalizable source, RealPositionable target) Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.
ThinplateSplineTransform	copy() Create a deep copy of this RealTransform.
int	numSourceDimensions() Returns n, the minimal number of dimension of the source vector.
int	numTargetDimensions() Returns m, the minimal dimension of the target vector.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.realtransform.RealTransform

apply, isIdentity

Constructor Detail

ThinplateSplineTransform

public ThinplateSplineTransform(ThinPlateR2LogRSplineKernelTransform tps)

ThinplateSplineTransform

public ThinplateSplineTransform(double[][] p,
                                double[][] q)

Method Detail

apply

public void apply(double[] source,
                  double[] target)

Description copied from interface: RealTransform

Apply the RealTransform to a source vector to obtain a target vector.

Specified by:

apply in interface RealTransform

Parameters:

source - source coordinates, length must be >= RealTransform.numSourceDimensions()

target - set this to the target coordinates, length must be >= RealTransform.numTargetDimensions()

apply

public void apply(RealLocalizable source,
                  RealPositionable target)

Description copied from interface: RealTransform

Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.

Specified by:

apply in interface RealTransform

Parameters:

source - source coordinates, numDimensions() must be >= RealTransform.numSourceDimensions()

target - set this to the target coordinates, numDimensions() must be >= RealTransform.numTargetDimensions()

copy

public ThinplateSplineTransform copy()

Description copied from interface: RealTransform

Create a deep copy of this RealTransform.

Deep copying is required to make sure that stateful RealTransforms can be duplicated for concurrent code.

Specified by:

copy in interface RealTransform

Returns:

deep copy

numSourceDimensions

public int numSourceDimensions()

Description copied from interface: RealTransform

Returns n, the minimal number of dimension of the source vector.

Specified by:

numSourceDimensions in interface RealTransform

Returns:

the dimension of the source vector.

numTargetDimensions

public int numTargetDimensions()

Description copied from interface: RealTransform

Returns m, the minimal dimension of the target vector.

Specified by:

numTargetDimensions in interface RealTransform

Returns:

the dimension of the target vector.