net.imglib2.algorithm.region.hypersphere

Class HyperSphereCursor<T>

java.lang.Object

net.imglib2.algorithm.region.hypersphere.HyperSphereCursor<T>

Type Parameters:

T -

All Implemented Interfaces:

Iterator<T>, net.imglib2.Cursor<T>, net.imglib2.EuclideanSpace, net.imglib2.Localizable, net.imglib2.RealCursor<T>, net.imglib2.RealLocalizable, net.imglib2.Sampler<T>, net.imglib2.Typed<T>

public class HyperSphereCursor<T>
extends Object
implements net.imglib2.Cursor<T>

Iterate over all pixels in an n-dimensional sphere.

Author:

Stephan Preibisch, Stephan Saalfeld, Stephan Preibisch, Stephan Saalfeld, Tobias Pietzsch

Field Summary

Fields

Modifier and Type	Field and Description
protected long[]	center
protected long	radius
protected net.imglib2.RandomAccess<T>	randomAccess

Constructor Summary

Constructors

Constructor and Description
HyperSphereCursor(HyperSphereCursor<T> cursor)
HyperSphereCursor(net.imglib2.RandomAccessible<T> source, long[] center, long radius)

Method Summary

Modifier and Type	Method and Description
HyperSphereCursor<T>	copy()
void	fwd()
T	get()
double	getDoublePosition(int d)
float	getFloatPosition(int d)
int	getIntPosition(int d)
long	getLongPosition(int d)
T	getType()
boolean	hasNext()
void	jumpFwd(long steps)
void	localize(double[] position)
void	localize(float[] position)
void	localize(int[] position)
void	localize(long[] position)
T	next()
int	numDimensions()
void	remove()
void	reset()
void	updateCenter(net.imglib2.Localizable center)
void	updateCenter(long[] center)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.Cursor

copyCursor

Methods inherited from interface java.util.Iterator

forEachRemaining

Methods inherited from interface net.imglib2.Localizable

localize, localize, positionAsLongArray, positionAsPoint

Methods inherited from interface net.imglib2.RealLocalizable

positionAsDoubleArray, positionAsRealPoint

Field Detail

center

protected final long[] center

randomAccess

protected final net.imglib2.RandomAccess<T> randomAccess

radius

protected final long radius

Constructor Detail

HyperSphereCursor

public HyperSphereCursor(net.imglib2.RandomAccessible<T> source,
                         long[] center,
                         long radius)

HyperSphereCursor

public HyperSphereCursor(HyperSphereCursor<T> cursor)

Method Detail

updateCenter

public void updateCenter(long[] center)

updateCenter

public void updateCenter(net.imglib2.Localizable center)

hasNext

public boolean hasNext()

Specified by:

hasNext in interface Iterator<T>

fwd

public void fwd()

reset

public void reset()

jumpFwd

public void jumpFwd(long steps)

localize

public void localize(float[] position)

Specified by:

localize in interface net.imglib2.RealLocalizable

localize

public void localize(double[] position)

Specified by:

localize in interface net.imglib2.RealLocalizable

getFloatPosition

public float getFloatPosition(int d)

Specified by:

getFloatPosition in interface net.imglib2.Localizable

Specified by:

getFloatPosition in interface net.imglib2.RealLocalizable

getDoublePosition

public double getDoublePosition(int d)

Specified by:

getDoublePosition in interface net.imglib2.Localizable

Specified by:

getDoublePosition in interface net.imglib2.RealLocalizable

numDimensions

public int numDimensions()

Specified by:

numDimensions in interface net.imglib2.EuclideanSpace

get

public T get()

Specified by:

get in interface net.imglib2.Sampler<T>

next

public T next()

Specified by:

next in interface Iterator<T>

Specified by:

next in interface net.imglib2.RealCursor<T>

remove

public void remove()

Specified by:

remove in interface Iterator<T>

localize

public void localize(int[] position)

Specified by:

localize in interface net.imglib2.Localizable

localize

public void localize(long[] position)

Specified by:

localize in interface net.imglib2.Localizable

getIntPosition

public int getIntPosition(int d)

Specified by:

getIntPosition in interface net.imglib2.Localizable

getLongPosition

public long getLongPosition(int d)

Specified by:

getLongPosition in interface net.imglib2.Localizable

copy

public HyperSphereCursor<T> copy()

Specified by:

copy in interface net.imglib2.Cursor<T>

Specified by:

copy in interface net.imglib2.RealCursor<T>

Specified by:

copy in interface net.imglib2.Sampler<T>

getType

public T getType()

Specified by:

getType in interface net.imglib2.Sampler<T>

Specified by:

getType in interface net.imglib2.Typed<T>