net.imglib2.algorithm.math.execution

Class IterableRandomAccessibleFunction<C extends net.imglib2.type.numeric.RealType<C>,O extends net.imglib2.type.numeric.RealType<O>>

java.lang.Object

net.imglib2.AbstractEuclideanSpace

net.imglib2.AbstractInterval

net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction<C,O>

Type Parameters:

O - The RealType.

All Implemented Interfaces:

Iterable<O>, net.imglib2.Dimensions, net.imglib2.EuclideanSpace, net.imglib2.Interval, net.imglib2.IterableInterval<O>, net.imglib2.IterableRealInterval<O>, net.imglib2.RandomAccessible<O>, net.imglib2.RandomAccessibleInterval<O>, net.imglib2.RealInterval, net.imglib2.Typed<O>, net.imglib2.View

Direct Known Subclasses:

IterableRandomAccessibleFunctionDouble

public class IterableRandomAccessibleFunction<C extends net.imglib2.type.numeric.RealType<C>,O extends net.imglib2.type.numeric.RealType<O>>
extends net.imglib2.AbstractInterval
implements net.imglib2.RandomAccessibleInterval<O>, net.imglib2.IterableInterval<O>, net.imglib2.View

A View of the computation defined by an IFunction. The dimensions are those of the first input RandomAccessibleInterval found. (the computation will fail if images do not have the same dimensions.) If an output type is not defined, then the RealType of the first RandomAccessibleInterval found is used.

Author:

Albert Cardona

Field Summary

Fields

Modifier and Type	Field and Description
protected C	computeType
protected net.imglib2.converter.Converter<net.imglib2.type.numeric.RealType<?>,C>	inConverter
protected IFunction	operation
protected net.imglib2.converter.Converter<C,O>	outConverter
protected O	outputType

Fields inherited from class net.imglib2.AbstractInterval

max, min

Fields inherited from class net.imglib2.AbstractEuclideanSpace

n

Constructor Summary

Constructors

Constructor and Description
IterableRandomAccessibleFunction(IFunction operation) Use a the same RealType as the first input RandomAccessibleInterval found, and a default Converter as defined by Util.genericRealTypeConverter().
IterableRandomAccessibleFunction(IFunction operation, net.imglib2.converter.Converter<net.imglib2.type.numeric.RealType<?>,C> inConverter, C computeType, O outputType, net.imglib2.converter.Converter<C,O> outConverter)
IterableRandomAccessibleFunction(IFunction operation, O outputType) Use a default Converter as defined by Util.genericRealTypeConverter().
IterableRandomAccessibleFunction(IFunction operation, O outputType, net.imglib2.converter.Converter<C,O> outConverter) Use a default Converter as defined by Util.genericRealTypeConverter().

Method Summary

Modifier and Type	Method and Description
net.imglib2.Cursor<O>	cursor()
O	firstElement()
O	getType()
Object	iterationOrder()
Iterator<O>	iterator()
net.imglib2.Cursor<O>	localizingCursor()
net.imglib2.RandomAccess<O>	randomAccess()
net.imglib2.RandomAccess<O>	randomAccess(net.imglib2.Interval interval)
long	size()

Methods inherited from class net.imglib2.AbstractInterval

dimension, dimensions, max, max, max, min, min, min, realMax, realMax, realMax, realMin, realMin, realMin, toString

Methods inherited from class net.imglib2.AbstractEuclideanSpace

numDimensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.imglib2.RandomAccessibleInterval

view

Methods inherited from interface net.imglib2.RandomAccessible

getAt, getAt, getAt

Methods inherited from interface net.imglib2.IterableInterval

localizingSpliterator, spliterator

Methods inherited from interface net.imglib2.IterableRealInterval

parallelStream, stream

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface net.imglib2.Interval

dimension, max, max, max, maxAsLongArray, maxAsPoint, min, min, min, minAsLongArray, minAsPoint, realMax, realMin

Methods inherited from interface net.imglib2.RealInterval

maxAsDoubleArray, maxAsRealPoint, minAsDoubleArray, minAsRealPoint, realMax, realMax, realMin, realMin

Methods inherited from interface net.imglib2.Dimensions

allPositive, allPositive, dimensions, dimensions, dimensionsAsLongArray, dimensionsAsPoint, verify, verify, verifyAllPositive, verifyAllPositive

Methods inherited from interface net.imglib2.EuclideanSpace

numDimensions

Field Detail

operation

protected final IFunction operation

computeType

protected final C extends net.imglib2.type.numeric.RealType<C> computeType

outputType

protected final O extends net.imglib2.type.numeric.RealType<O> outputType

inConverter

protected final net.imglib2.converter.Converter<net.imglib2.type.numeric.RealType<?>,C extends net.imglib2.type.numeric.RealType<C>> inConverter

outConverter

protected final net.imglib2.converter.Converter<C extends net.imglib2.type.numeric.RealType<C>,O extends net.imglib2.type.numeric.RealType<O>> outConverter

Constructor Detail

IterableRandomAccessibleFunction

public IterableRandomAccessibleFunction(IFunction operation,
                                        net.imglib2.converter.Converter<net.imglib2.type.numeric.RealType<?>,C> inConverter,
                                        C computeType,
                                        O outputType,
                                        net.imglib2.converter.Converter<C,O> outConverter)

Parameters:

operation -

inConverter - Can be null

computeType -

outputType -

outConverter - Can be null.

IterableRandomAccessibleFunction

public IterableRandomAccessibleFunction(IFunction operation,
                                        O outputType)

Use a default Converter as defined by Util.genericRealTypeConverter().

IterableRandomAccessibleFunction

public IterableRandomAccessibleFunction(IFunction operation,
                                        O outputType,
                                        net.imglib2.converter.Converter<C,O> outConverter)

Use a default Converter as defined by Util.genericRealTypeConverter().

IterableRandomAccessibleFunction

public IterableRandomAccessibleFunction(IFunction operation)

Use a the same RealType as the first input RandomAccessibleInterval found, and a default Converter as defined by Util.genericRealTypeConverter().

Method Detail

randomAccess

public net.imglib2.RandomAccess<O> randomAccess()

Specified by:

randomAccess in interface net.imglib2.RandomAccessible<O extends net.imglib2.type.numeric.RealType<O>>

randomAccess

public net.imglib2.RandomAccess<O> randomAccess(net.imglib2.Interval interval)

Specified by:

randomAccess in interface net.imglib2.RandomAccessible<O extends net.imglib2.type.numeric.RealType<O>>

firstElement

public O firstElement()

Specified by:

firstElement in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

iterationOrder

public Object iterationOrder()

Specified by:

iterationOrder in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

iterationOrder in interface net.imglib2.RandomAccessibleInterval<O extends net.imglib2.type.numeric.RealType<O>>

size

public long size()

Specified by:

size in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

size in interface net.imglib2.RandomAccessibleInterval<O extends net.imglib2.type.numeric.RealType<O>>

iterator

public Iterator<O> iterator()

Specified by:

iterator in interface Iterable<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

iterator in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

cursor

public net.imglib2.Cursor<O> cursor()

Specified by:

cursor in interface net.imglib2.IterableInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

cursor in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

cursor in interface net.imglib2.RandomAccessibleInterval<O extends net.imglib2.type.numeric.RealType<O>>

localizingCursor

public net.imglib2.Cursor<O> localizingCursor()

Specified by:

localizingCursor in interface net.imglib2.IterableInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

localizingCursor in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

localizingCursor in interface net.imglib2.RandomAccessibleInterval<O extends net.imglib2.type.numeric.RealType<O>>

getType

public O getType()

Specified by:

getType in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

getType in interface net.imglib2.Typed<O extends net.imglib2.type.numeric.RealType<O>>