net.imglib2.algorithm.gauss

Class GaussFloat

java.lang.Object

net.imglib2.algorithm.gauss.AbstractGauss<net.imglib2.type.numeric.real.FloatType>

net.imglib2.algorithm.gauss.GaussFloat

Deprecated.

@Deprecated
public final class GaussFloat
extends AbstractGauss<net.imglib2.type.numeric.real.FloatType>

TODO

Author:

Stephan Preibisch

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	isArray Deprecated.

Constructor Summary

Constructors

Constructor and Description
GaussFloat(double[] sigma, net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input) Deprecated. Computes a Gaussian convolution with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
GaussFloat(double[] sigma, net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.outofbounds.OutOfBoundsFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>> outOfBounds) Deprecated. Computes a Gaussian convolution with float precision on an entire Img
GaussFloat(double[] sigma, net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.Interval interval, net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory) Deprecated. Computes a Gaussian convolution with float precision on a RandomAccessible of FloatType in a certain Interval and returns an Img defined by the ImgFactory containing the result
GaussFloat(double[] sigma, net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.Interval interval, net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> output, net.imglib2.Localizable outputOffset, net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory) Deprecated. Computes a Gaussian convolution with float precision on a RandomAccessible of FloatType in a certain Interval and writes it into a given RandomAccessible at a specific Point

Method Summary

Modifier and Type	Method and Description
static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>	gauss(double[] sigma, net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input) Deprecated.
static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>	gauss(double[] sigma, net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.outofbounds.OutOfBoundsFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>> outOfBounds) Deprecated.
static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>	gauss(double[] sigma, net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.Interval interval, net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory) Deprecated.
static void	gauss(double[] sigma, net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.Interval interval, net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> output, net.imglib2.Localizable outputOffset, net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory) Deprecated.
protected net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>	getProcessingLine(long sizeProcessLine) Deprecated.
protected boolean	isArray() Deprecated.
protected void	processLine(SamplingLineIterator<net.imglib2.type.numeric.real.FloatType> input, double[] kernel) Deprecated. Compute the current line.

Methods inherited from class net.imglib2.algorithm.gauss.AbstractGauss

call, computeKernel, createInputLineSampler, createOutputLineWriter, getFactory, getInput, getInputInterval, getKernel, getNumThreads, getOutput, getOutputOffset, getProcessingType, getRange, getResult, getSigma, getTemporaryImgSize, getTmp1, getTmp2, numDimensions, setNumThreads, type, updateInputLineSampler, updateOutputLineWriter, writeLine

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

isArray

protected boolean isArray

Deprecated.

Constructor Detail

GaussFloat

public GaussFloat(double[] sigma,
                  net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input,
                  net.imglib2.Interval interval,
                  net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory)

Deprecated.

Computes a Gaussian convolution with float precision on a RandomAccessible of FloatType in a certain Interval and returns an Img defined by the ImgFactory containing the result

Parameters:

sigma - - the sigma for the convolution

input - - the RandomAccessible to work on

interval - - the area that is convolved

factory - - the ImgFactory that defines the temporary and output images to be used

GaussFloat

public GaussFloat(double[] sigma,
                  net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input,
                  net.imglib2.Interval interval,
                  net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> output,
                  net.imglib2.Localizable outputOffset,
                  net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory)

Deprecated.

Computes a Gaussian convolution with float precision on a RandomAccessible of FloatType in a certain Interval and writes it into a given RandomAccessible at a specific Point

Parameters:

sigma - - the sigma for the convolution

input - - the RandomAccessible to work on

interval - - the area that is convolved

output - - the RandomAccessible where the output will be written to

outputOffset - - the offset that corresponds to the first pixel in output RandomAccessible

factory - - the ImgFactory for creating temporary images

GaussFloat

public GaussFloat(double[] sigma,
                  net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input)

Deprecated.

Computes a Gaussian convolution with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary

Parameters:

sigma - - the sigma for the convolution

input - - the input Img

GaussFloat

public GaussFloat(double[] sigma,
                  net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input,
                  net.imglib2.outofbounds.OutOfBoundsFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>> outOfBounds)

Deprecated.

Computes a Gaussian convolution with float precision on an entire Img

Parameters:

sigma - - the sigma for the convolution

input - - the input Img

outOfBounds - - the OutOfBoundsFactory to use

Method Detail

gauss

public static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> gauss(double[] sigma,
                                                                                 net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input)

Deprecated.

gauss

public static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> gauss(double[] sigma,
                                                                                 net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> input,
                                                                                 net.imglib2.outofbounds.OutOfBoundsFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>> outOfBounds)

Deprecated.

gauss

public static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> gauss(double[] sigma,
                                                                                 net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input,
                                                                                 net.imglib2.Interval interval,
                                                                                 net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory)

Deprecated.

gauss

public static void gauss(double[] sigma,
                         net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input,
                         net.imglib2.Interval interval,
                         net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> output,
                         net.imglib2.Localizable outputOffset,
                         net.imglib2.img.ImgFactory<net.imglib2.type.numeric.real.FloatType> factory)

Deprecated.

getProcessingLine

protected net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> getProcessingLine(long sizeProcessLine)

Deprecated.

Specified by:

getProcessingLine in class AbstractGauss<net.imglib2.type.numeric.real.FloatType>

processLine

protected void processLine(SamplingLineIterator<net.imglib2.type.numeric.real.FloatType> input,
                           double[] kernel)

Deprecated.

Compute the current line. It is up to the implementation howto really do that. The idea is to only iterate over the input once (that's why it is an Iterator) as it is potentially an expensive operation (e.g. a Converter might be involved or we are computing on a rendered input)

Overrides:

processLine in class AbstractGauss<net.imglib2.type.numeric.real.FloatType>

Parameters:

input - - the Iterator/Sampler over the current input line.

isArray

protected boolean isArray()

Deprecated.