net.imglib2.algorithm.fill

Class FloodFill

java.lang.Object

net.imglib2.algorithm.fill.FloodFill

public class FloodFill
extends Object

Iterative n-dimensional flood fill for arbitrary neighborhoods.

Author:

Philipp Hanslovsky, Stephan Saalfeld

Constructor Summary

Constructors

Constructor and Description
FloodFill()

Method Summary

Modifier and Type	Method and Description
static <T,U> void	fill(net.imglib2.RandomAccessible<T> source, net.imglib2.RandomAccessible<U> target, net.imglib2.Localizable seed, Shape shape, BiPredicate<T,U> filter, Consumer<U> writer) Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet.
static <T,U extends net.imglib2.type.Type<U>> void	fill(net.imglib2.RandomAccessible<T> source, net.imglib2.RandomAccessible<U> target, net.imglib2.Localizable seed, T seedLabel, U fillLabel, Shape shape, Filter<net.imglib2.util.Pair<T,U>,net.imglib2.util.Pair<T,U>> filter) Deprecated.
static <T,U> void	fill(net.imglib2.RandomAccessible<T> source, net.imglib2.RandomAccessible<U> target, net.imglib2.Localizable seed, T seedLabel, U fillLabel, Shape shape, Filter<net.imglib2.util.Pair<T,U>,net.imglib2.util.Pair<T,U>> filter, Writer<U> writer) Deprecated.
static <T extends net.imglib2.type.Type<T>,U extends net.imglib2.type.Type<U>> void	fill(net.imglib2.RandomAccessible<T> source, net.imglib2.RandomAccessible<U> target, net.imglib2.Localizable seed, U fillLabel, Shape shape) Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet.
static <T,U extends net.imglib2.type.Type<U>> void	fill(net.imglib2.RandomAccessible<T> source, net.imglib2.RandomAccessible<U> target, net.imglib2.Localizable seed, U fillLabel, Shape shape, BiPredicate<T,U> filter) Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet.
static <T extends net.imglib2.type.Type<T>,U extends net.imglib2.type.Type<U>> void	fill(net.imglib2.RandomAccessible<T> source, net.imglib2.RandomAccessible<U> target, net.imglib2.Localizable seed, U fillLabel, Shape shape, Filter<net.imglib2.util.Pair<T,U>,net.imglib2.util.Pair<T,U>> filter) Deprecated.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FloodFill

public FloodFill()

Method Detail

fill

public static <T extends net.imglib2.type.Type<T>,U extends net.imglib2.type.Type<U>> void fill(net.imglib2.RandomAccessible<T> source,
                                                                                                net.imglib2.RandomAccessible<U> target,
                                                                                                net.imglib2.Localizable seed,
                                                                                                U fillLabel,
                                                                                                Shape shape)

Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet. Convenience call to fill(RandomAccessible, RandomAccessible, Localizable, Type, Shape, BiPredicate). seedLabel is extracted from source at seed location.

Type Parameters:

T - input pixel type

U - fill label type

Parameters:

source - input

target - RandomAccessible to be written into. May be the same as input.

seed - Start flood fill at this location.

fillLabel - Immutable. Value to be written into valid flood fill locations.

shape - Defines neighborhood that is considered for connected components, e.g. DiamondShape

fill

public static <T,U extends net.imglib2.type.Type<U>> void fill(net.imglib2.RandomAccessible<T> source,
                                                               net.imglib2.RandomAccessible<U> target,
                                                               net.imglib2.Localizable seed,
                                                               U fillLabel,
                                                               Shape shape,
                                                               BiPredicate<T,U> filter)

Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet. Convenience call to fill(RandomAccessible, RandomAccessible, Localizable, Shape, BiPredicate, Consumer) with Type.set(T) as writer.

Type Parameters:

T - input pixel type

U - fill label type

Parameters:

source - input

target - RandomAccessible to be written into. May be the same as input.

seed - Start flood fill at this location.

fillLabel - Immutable. Value to be written into valid flood fill locations.

shape - Defines neighborhood that is considered for connected components, e.g. DiamondShape

filter - Returns true if pixel has not been visited yet and should be written into. Returns false if target pixel has been visited or source pixel is not part of the same connected component.

fill

public static <T,U> void fill(net.imglib2.RandomAccessible<T> source,
                              net.imglib2.RandomAccessible<U> target,
                              net.imglib2.Localizable seed,
                              Shape shape,
                              BiPredicate<T,U> filter,
                              Consumer<U> writer)

Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet.

Type Parameters:

T - input pixel type

U - fill label type

Parameters:

source - input

target - RandomAccessible to be written into. May be the same as input.

seed - Start flood fill at this location.

shape - Defines neighborhood that is considered for connected components, e.g. DiamondShape

filter - Returns true if pixel has not been visited yet and should be written into. Returns false if target pixel has been visited or source pixel is not part of the same connected component.

writer - Defines how fill label is written into target at current location.

fill

@Deprecated
public static <T extends net.imglib2.type.Type<T>,U extends net.imglib2.type.Type<U>> void fill(net.imglib2.RandomAccessible<T> source,
                                                                                                            net.imglib2.RandomAccessible<U> target,
                                                                                                            net.imglib2.Localizable seed,
                                                                                                            U fillLabel,
                                                                                                            Shape shape,
                                                                                                            Filter<net.imglib2.util.Pair<T,U>,net.imglib2.util.Pair<T,U>> filter)

Deprecated.

Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet (comparator evaluates to 0). Convenience call to fill(RandomAccessible, RandomAccessible, Localizable, Object, Type, Shape, Filter) . seedLabel is extracted from source at seed location.

Type Parameters:

T - input pixel type

U - fill label type

Parameters:

source - input

target - RandomAccessible to be written into. May be the same as input.

seed - Start flood fill at this location.

fillLabel - Immutable. Value to be written into valid flood fill locations.

filter - Returns true if pixel has not been visited yet and should be written into. Returns false if target pixel has been visited or source pixel is not part of the same connected component.

fill

@Deprecated
public static <T,U extends net.imglib2.type.Type<U>> void fill(net.imglib2.RandomAccessible<T> source,
                                                                           net.imglib2.RandomAccessible<U> target,
                                                                           net.imglib2.Localizable seed,
                                                                           T seedLabel,
                                                                           U fillLabel,
                                                                           Shape shape,
                                                                           Filter<net.imglib2.util.Pair<T,U>,net.imglib2.util.Pair<T,U>> filter)

Deprecated.

Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet (comparator evaluates to 0). Convenience call to fill(RandomAccessible, RandomAccessible, Localizable, Object, Object, Shape, Filter, Writer) with TypeWriter as writer.

Type Parameters:

T - input pixel type

U - fill label type

Parameters:

source - input

target - RandomAccessible to be written into. May be the same as input.

seed - Start flood fill at this location.

seedLabel - Immutable. Reference value of input at seed location.

fillLabel - Immutable. Value to be written into valid flood fill locations.

filter - Returns true if pixel has not been visited yet and should be written into. Returns false if target pixel has been visited or source pixel is not part of the same connected component.

fill

@Deprecated
public static <T,U> void fill(net.imglib2.RandomAccessible<T> source,
                                          net.imglib2.RandomAccessible<U> target,
                                          net.imglib2.Localizable seed,
                                          T seedLabel,
                                          U fillLabel,
                                          Shape shape,
                                          Filter<net.imglib2.util.Pair<T,U>,net.imglib2.util.Pair<T,U>> filter,
                                          Writer<U> writer)

Deprecated.

Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet (comparator evaluates to 0).

Type Parameters:

T - input pixel type

U - fill label type

Parameters:

source - input

target - RandomAccessible to be written into. May be the same as input.

seed - Start flood fill at this location.

seedLabel - Immutable. Reference value of input at seed location.

fillLabel - Immutable. Value to be written into valid flood fill locations.

shape - Defines neighborhood that is considered for connected components, e.g. DiamondShape

filter - Returns true if pixel has not been visited yet and should be written into. Returns false if target pixel has been visited or source pixel is not part of the same connected component.

writer - Defines how fillLabel is written into target at current location.