A B C D E G H I L M N P R S T V

A

addRow(Object...) - Method in class net.imagej.notebook.NotebookTable

Adds a row to the table.

B

base64(RenderedImage) - Static method in class net.imagej.notebook.Images

bufferedImage(Dataset) - Static method in class net.imagej.notebook.Images

Converts the given Dataset to a BufferedImage.

bufferedImage(RandomAccessibleInterval<T>) - Static method in class net.imagej.notebook.Images

Converts the given RandomAccessibleInterval to a BufferedImage.

bufferedImage(RandomAccessibleInterval<T>, double, double) - Static method in class net.imagej.notebook.Images

Converts the given RandomAccessibleInterval to a BufferedImage.

bufferedImage(RandomAccessibleInterval<T>, double[], double[]) - Static method in class net.imagej.notebook.Images

Converts the given RandomAccessibleInterval to a BufferedImage.

bufferedImage(RandomAccessibleInterval<T>, int, int, int, NotebookService.ValueScaling, long...) - Static method in class net.imagej.notebook.Images

Converts the given RandomAccessibleInterval to a BufferedImage.

bufferedImage(RandomAccessibleInterval<T>, int, int, int, double[], double[], long...) - Static method in class net.imagej.notebook.Images

Converts the given RandomAccessibleInterval to a BufferedImage.

BufferedImageToHTMLConverter - Class in net.imagej.notebook.image

Converter from BufferedImage to HTMLObject.

BufferedImageToHTMLConverter() - Constructor for class net.imagej.notebook.image.BufferedImageToHTMLConverter

C

channels(RandomAccessibleInterval<T>) - Static method in class net.imagej.notebook.chart.Charts

Charts - Class in net.imagej.notebook.chart

Utility methods for calculating histograms and plotting charts.

Charts() - Constructor for class net.imagej.notebook.chart.Charts

convert(Histogram1d<?>) - Method in class net.imagej.notebook.chart.Histogram1dToHTMLConverter

convert(BufferedImage) - Method in class net.imagej.notebook.image.BufferedImageToHTMLConverter

convert(DatasetView) - Method in class net.imagej.notebook.image.DatasetViewToHTMLConverter

convert(RandomAccessibleInterval<?>) - Method in class net.imagej.notebook.image.RAIToHTMLConverter

convert(List<?>) - Method in class net.imagej.notebook.mime.ListToHTMLConverter

convert(Object, Class<T>) - Method in class net.imagej.notebook.mime.MIMEConverter

convert(I) - Method in class net.imagej.notebook.mime.MIMEConverter

convert(Table<?, ?>) - Method in class net.imagej.notebook.table.TableToHTMLConverter

D

data() - Method in interface net.imagej.notebook.mime.MIMEObject

The encoded data.

DatasetViewToHTMLConverter - Class in net.imagej.notebook.image

Converter from DatasetView to HTMLObject.

DatasetViewToHTMLConverter() - Constructor for class net.imagej.notebook.image.DatasetViewToHTMLConverter

decode(byte[]) - Static method in class net.imagej.notebook.Images

Converts the given byte array into a BufferedImage.

DefaultNotebookService - Class in net.imagej.notebook

AWT-driven implementation of NotebookService.

DefaultNotebookService() - Constructor for class net.imagej.notebook.DefaultNotebookService

display(Object) - Method in class net.imagej.notebook.DefaultNotebookService

display(Object) - Method in interface net.imagej.notebook.NotebookService

Converts the given object to a form renderable by scientific notebooks.

display(Map<?, ?>) - Method in interface net.imagej.notebook.NotebookService

Converts the given map data to a form renderable by scientific notebooks.

display(Map<?, T>, String) - Method in interface net.imagej.notebook.NotebookService

Converts the given map data to a form renderable by scientific notebooks.

display(List<?>) - Method in interface net.imagej.notebook.NotebookService

Converts the given list data to a form renderable by scientific notebooks.

display(List<?>, String) - Method in interface net.imagej.notebook.NotebookService

Converts the given list data to a form renderable by scientific notebooks.

display(List<?>, List<String>) - Method in interface net.imagej.notebook.NotebookService

Converts the given list data to a form renderable by scientific notebooks.

display(List<T>, String, List<String>) - Method in interface net.imagej.notebook.NotebookService

Converts the given list data to a form renderable by scientific notebooks.

display(Dataset) - Method in interface net.imagej.notebook.NotebookService

Converts the given image to a form renderable by scientific notebooks.

display(RandomAccessibleInterval<T>) - Method in interface net.imagej.notebook.NotebookService

Converts the given image to a form renderable by scientific notebooks.

display(RandomAccessibleInterval<T>, double, double) - Method in interface net.imagej.notebook.NotebookService

Converts the given image to a form renderable by scientific notebooks.

display(RandomAccessibleInterval<T>, double[], double[]) - Method in interface net.imagej.notebook.NotebookService

Converts the given image to a form renderable by scientific notebooks.

display(RandomAccessibleInterval<T>, int, int, int, NotebookService.ValueScaling, long...) - Method in interface net.imagej.notebook.NotebookService

Converts the given image to a form renderable by scientific notebooks.

display(RandomAccessibleInterval<T>, int, int, int, double[], double[], long...) - Method in interface net.imagej.notebook.NotebookService

Converts the given image to a form renderable by scientific notebooks.

E

encode(RenderedImage) - Static method in class net.imagej.notebook.Images

Converts the given RenderedImage into a stream of PNG bytes.

encode(RenderedImage, String) - Static method in class net.imagej.notebook.Images

Converts the given RenderedImage into a stream of bytes.

G

getInputType() - Method in class net.imagej.notebook.mime.MIMEConverter

getOutputType() - Method in class net.imagej.notebook.mime.MIMEConverter

H

Histogram1dToHTMLConverter - Class in net.imagej.notebook.chart

Converter from Histogram1d to HTMLObject.

Histogram1dToHTMLConverter() - Constructor for class net.imagej.notebook.chart.Histogram1dToHTMLConverter

html(RenderedImage) - Static method in class net.imagej.notebook.Images

html(RenderedImage, String) - Static method in class net.imagej.notebook.Images

HTMLObject - Interface in net.imagej.notebook.mime

An object that knows how to encode itself as an HTML string.

I

Images - Class in net.imagej.notebook

Utility methods for adapting image data structures.

initialize() - Method in class net.imagej.notebook.DefaultNotebookService

L

ListToHTMLConverter - Class in net.imagej.notebook.mime

Converter from List to HTMLObject.

ListToHTMLConverter() - Constructor for class net.imagej.notebook.mime.ListToHTMLConverter

log - Variable in class net.imagej.notebook.mime.MIMEConverter

M

methods(Class<?>, String) - Method in class net.imagej.notebook.DefaultNotebookService

methods(Object) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given object.

methods(Object, String) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given object.

methods(Class<?>) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given class.

methods(Class<?>, String) - Method in interface net.imagej.notebook.NotebookService

Outputs a table of public methods for the given class.

MIMEConverter<I,O extends MIMEObject> - Class in net.imagej.notebook.mime

Base class for plugins that convert things to MIMEObjects.

MIMEConverter() - Constructor for class net.imagej.notebook.mime.MIMEConverter

MIMEObject - Interface in net.imagej.notebook.mime

An object that knows how to encode itself as some sort of MIME type.

mimeType() - Method in interface net.imagej.notebook.mime.HTMLObject

mimeType() - Method in interface net.imagej.notebook.mime.MIMEObject

MIME type of the encoded object.

mimeType() - Method in interface net.imagej.notebook.mime.PNGObject

mosaic(int[], RandomAccessibleInterval<T>...) - Method in class net.imagej.notebook.DefaultNotebookService

mosaic(int[], RandomAccessibleInterval<T>...) - Method in interface net.imagej.notebook.NotebookService

Organizes the given list of images into an N-dimensional mosaic.

N

net.imagej.notebook - package net.imagej.notebook

net.imagej.notebook.chart - package net.imagej.notebook.chart

net.imagej.notebook.image - package net.imagej.notebook.image

net.imagej.notebook.mime - package net.imagej.notebook.mime

net.imagej.notebook.table - package net.imagej.notebook.table

NotebookService - Interface in net.imagej.notebook

Interface for services which provide handy methods for working with scientific notebook software (e.g., Beaker Notebook).

NotebookService.ValueScaling - Enum in net.imagej.notebook

Strategy to use for scaling the image intensity values.

NotebookTable - Class in net.imagej.notebook

A table data structure which displays nicely in a notebook.

NotebookTable() - Constructor for class net.imagej.notebook.NotebookTable

P

plot(Histogram1d<?>...) - Static method in class net.imagej.notebook.chart.Charts

plot(List<Histogram1d<?>>) - Static method in class net.imagej.notebook.chart.Charts

PNGObject - Interface in net.imagej.notebook.mime

An object that knows how to base64-encode itself as a PNG image.

R

RAIToHTMLConverter - Class in net.imagej.notebook.image

Converter from RandomAccessibleInterval to HTMLObject.

RAIToHTMLConverter() - Constructor for class net.imagej.notebook.image.RAIToHTMLConverter

S

slices(RandomAccessibleInterval<T>, int) - Static method in class net.imagej.notebook.chart.Charts

T

TableToHTMLConverter - Class in net.imagej.notebook.table

Converter from Table to HTMLObject.

TableToHTMLConverter() - Constructor for class net.imagej.notebook.table.TableToHTMLConverter

V

valueOf(String) - Static method in enum net.imagej.notebook.NotebookService.ValueScaling

Returns the enum constant of this type with the specified name.

values() - Static method in enum net.imagej.notebook.NotebookService.ValueScaling

Returns an array containing the constants of this enum type, in the order they are declared.

view(RandomAccessibleInterval<?>) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView.

view(RandomAccessibleInterval<?>, double, double) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum values.

view(RandomAccessibleInterval<?>, double[], double[]) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum arrays.

viewRealType(RandomAccessibleInterval<T>) - Method in class net.imagej.notebook.DefaultNotebookService

viewRealType(RandomAccessibleInterval<T>) - Method in interface net.imagej.notebook.NotebookService

Conveniently wraps a RandomAccessibleInterval of RealType into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum arrays.

A B C D E G H I L M N P R S T V