Index (ImageJ Common 2.1.0 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

a() - Method in class net.imagej.axis.Variable1Axis
about() - Method in class net.imagej.app.ImageJApp
AboutImageJ - Class in net.imagej.app: Displays information and credits about the ImageJ software.
AboutImageJ() - Constructor for class net.imagej.app.AboutImageJ
abs() - Method in class net.imagej.types.PreciseFixedFloatType
AbstractAnnotatedSpace<A extends Axis> - Class in net.imagej.space: Abstract base class for AnnotatedSpace implementations.
AbstractAnnotatedSpace(int) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
AbstractAnnotatedSpace(A...) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
AbstractAnnotatedSpace(List<A>) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
AbstractAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale: Abstract base class for AutoscaleMethod plugins.
AbstractAutoscaleMethod() - Constructor for class net.imagej.autoscale.AbstractAutoscaleMethod
AbstractCalibratedAxis - Class in net.imagej.axis: Abstract base class for CalibratedAxis.
AbstractCalibratedAxis(AxisType) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
AbstractCalibratedAxis(AxisType, String) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
AbstractCalibratedRealInterval<A extends CalibratedAxis> - Class in net.imagej.interval: Abstract base class for CalibratedRealInterval.
AbstractCalibratedRealInterval(RealInterval) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(RealInterval, A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(RealInterval, List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedRealInterval(double[], double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
AbstractCalibratedSpace<A extends CalibratedAxis> - Class in net.imagej.space: Abstract base class for CalibratedSpace.
AbstractCalibratedSpace(int) - Constructor for class net.imagej.space.AbstractCalibratedSpace
AbstractCalibratedSpace(A...) - Constructor for class net.imagej.space.AbstractCalibratedSpace
AbstractCalibratedSpace(List<A>) - Constructor for class net.imagej.space.AbstractCalibratedSpace
AbstractData - Class in net.imagej: Base implementation of Data.
AbstractData(RealInterval) - Constructor for class net.imagej.AbstractData: Default constructor for use by serialization code.
AbstractData(Context, RealInterval) - Constructor for class net.imagej.AbstractData: TODO
AbstractDataView - Class in net.imagej.display: Abstract superclass for DataViews.
AbstractDataView() - Constructor for class net.imagej.display.AbstractDataView
AbstractImageDisplayViewer - Class in net.imagej.ui.viewer.image: The AbstractImageDisplayViewer implements the UI-independent elements of an image display viewer.
AbstractImageDisplayViewer() - Constructor for class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
AbstractImageDisplayViewer.ZoomScaleOption - Enum in net.imagej.ui.viewer.image
AbstractLinearSpace<A extends LinearAxis> - Class in net.imagej.space: Abstract base class for LinearSpace.
AbstractLinearSpace(int) - Constructor for class net.imagej.space.AbstractLinearSpace
AbstractLinearSpace(A...) - Constructor for class net.imagej.space.AbstractLinearSpace
AbstractLinearSpace(List<A>) - Constructor for class net.imagej.space.AbstractLinearSpace
AbstractMaskToRAConverter<M extends Mask,R extends RandomAccessible<BoolType>> - Class in net.imagej.roi: Base class for converting Mask to RandomAccessible.
AbstractMaskToRAConverter() - Constructor for class net.imagej.roi.AbstractMaskToRAConverter
AbstractMinMaxMethod<T extends Type<T> & Comparable<T>> - Class in net.imagej.minmax: Abstract superclass for MinMaxMethod implementations.
AbstractMinMaxMethod() - Constructor for class net.imagej.minmax.AbstractMinMaxMethod
AbstractOverlay - Class in net.imagej.overlay: Abstract superclass of Overlay implementations.
AbstractOverlay(RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
AbstractOverlay(Context, RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
AbstractPlanarCommand - Class in net.imagej.command: Abstract superclass for commands that can operate on a single plane.
AbstractPlanarCommand() - Constructor for class net.imagej.command.AbstractPlanarCommand
AbstractRAToMaskConverter<R extends RandomAccessible<BoolType>,M extends Mask> - Class in net.imagej.roi: Abstract base class for converting RandomAccessible to Mask.
AbstractRAToMaskConverter() - Constructor for class net.imagej.roi.AbstractRAToMaskConverter
AbstractRealMaskToRRAConverter<M extends RealMask,R extends RealRandomAccessible<BoolType>> - Class in net.imagej.roi: Base class for converting RealMask to RealRandomAccessible.
AbstractRealMaskToRRAConverter() - Constructor for class net.imagej.roi.AbstractRealMaskToRRAConverter
AbstractROIOverlay<R extends RegionOfInterest> - Class in net.imagej.overlay: An overlay that has an associated region of interest
AbstractROIOverlay(R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
AbstractROIOverlay(Context, R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
AbstractRRAToRealMaskConverter<R extends RealRandomAccessible<BoolType>,M extends RealMask> - Class in net.imagej.roi: Abstract base class for convert RealRandomAccessible to RealMask.
AbstractRRAToRealMaskConverter() - Constructor for class net.imagej.roi.AbstractRRAToRealMaskConverter
AbstractTypedSpace<A extends TypedAxis> - Class in net.imagej.space: Abstract base class for TypedSpace.
AbstractTypedSpace(int) - Constructor for class net.imagej.space.AbstractTypedSpace
AbstractTypedSpace(A...) - Constructor for class net.imagej.space.AbstractTypedSpace
AbstractTypedSpace(List<A>) - Constructor for class net.imagej.space.AbstractTypedSpace
ActiveChannelCollectionPreprocessor - Class in net.imagej.display.process: Assigns the active ChannelCollection when there is one single unresolved ChannelCollection parameter.
ActiveChannelCollectionPreprocessor() - Constructor for class net.imagej.display.process.ActiveChannelCollectionPreprocessor
ActiveImagePreprocessor - Class in net.imagej.display.process: Assigns the active image based on the active ImageDisplay when there is one single unresolved image parameter.
ActiveImagePreprocessor() - Constructor for class net.imagej.display.process.ActiveImagePreprocessor
ActiveOverlayPreprocessor - Class in net.imagej.display.process: Assigns the Overlay of the active ImageDisplay when there is one single unresolved Overlay parameter.
ActiveOverlayPreprocessor() - Constructor for class net.imagej.display.process.ActiveOverlayPreprocessor
ActivePositionPreprocessor - Class in net.imagej.display.process: Assigns the Position of the active ImageDisplay when there is one single unresolved Position parameter.
ActivePositionPreprocessor() - Constructor for class net.imagej.display.process.ActivePositionPreprocessor
add(String) - Method in class net.imagej.display.DefaultWindowService
add(String) - Method in interface net.imagej.display.WindowService: Adds a path to the list of window files.
add(Object, Object) - Method in interface net.imagej.roi.ROIService: Attaches the given ROI to the given image
add(Table<?, ?>, Dataset) - Method in interface net.imagej.table.TableService: Attaches the given Table to the Dataset
add(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex: Set self to the result of addition between two BigComplex values.
add(BigComplex) - Method in class net.imagej.types.BigComplex: Adds another BigComplex value to self.
add(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
add(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
add(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
add(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
add(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
addOverlay(int, Overlay) - Method in class net.imagej.display.OverlayInfoList
addOverlay(Overlay) - Method in class net.imagej.display.OverlayInfoList
addOverlayInfo(int, OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
addOverlayInfo(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in class net.imagej.display.DefaultOverlayService
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in interface net.imagej.display.OverlayService: Adds the list of Overlays to the given ImageDisplay.
addROIs(List<MaskPredicate<?>>) - Method in interface net.imagej.roi.ROITree: Adds the given list of ROIs to the tree.
and(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
AngleOverlay - Class in net.imagej.overlay: Represents an angle having a center point and two end points.
AngleOverlay() - Constructor for class net.imagej.overlay.AngleOverlay
AngleOverlay(Context) - Constructor for class net.imagej.overlay.AngleOverlay
AngleOverlay(Context, double[], double[], double[]) - Constructor for class net.imagej.overlay.AngleOverlay
Animation - Class in net.imagej.animation: The Animation class takes care of running an animation along an axis.
Animation(ImageDisplay) - Constructor for class net.imagej.animation.Animation: Creates an animation for the given ImageDisplay.
AnimationService - Interface in net.imagej.animation: Interface for service that works with Animations.
AnnotatedSpace<A extends Axis> - Interface in net.imagej.space: A Euclidean space with associated metadata about each dimension of the space.
ApplyLookupTable - Class in net.imagej.lut: Reads a lookup table from a URL.
ApplyLookupTable() - Constructor for class net.imagej.lut.ApplyLookupTable
applyLUT(ColorTable, ImageDisplay) - Method in class net.imagej.lut.DefaultLUTService
applyLUT(ColorTable, ImageDisplay) - Method in interface net.imagej.lut.LUTService: Applies the given ColorTable to the active view of the specified ImageDisplay.
AppUtils - Class in net.imagej.util: Useful methods for obtaining details of the ImageJ application environment.
areInteger() - Method in class net.imagej.ChannelCollection: Returns true if all channels in the collection can be exactly represented with integer types.
arrowLineDecoration - Static variable in class net.imagej.options.OptionsOverlay
asDouble(T) - Method in interface net.imagej.types.DataType: Converts value to a double.
asDouble(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
asDouble(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
asDouble(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
asDouble(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
asDouble(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
asDouble(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
asDouble(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
asDouble(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
asDouble(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
asDouble(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
asDouble(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
asDouble(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
asDouble(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
asDouble(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
asDouble(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
asDouble(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
asDouble(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
asLong(T) - Method in interface net.imagej.types.DataType: Converts value to a long.
asLong(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
asLong(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
asLong(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
asLong(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
asLong(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
asLong(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
asLong(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
asLong(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
asLong(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
asLong(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
asLong(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
asLong(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
asLong(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
asLong(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
asLong(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
asLong(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
asLong(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
asType(ImgPlus<?>, T) - Method in class net.imagej.DefaultImgPlusService
asType(ImgPlus<?>, T) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of a given type.
atan2(PreciseFixedFloatType, PreciseFixedFloatType) - Static method in class net.imagej.types.PreciseFixedFloatType
autoscale(int) - Method in interface net.imagej.display.DatasetView: Autoscales the display range to match the data range, for the given channel.
autoscale(int) - Method in class net.imagej.display.DefaultDatasetView
AutoscaleMethod<T extends RealType<T>> - Interface in net.imagej.autoscale: An algorithm for computing suitable display ranges from interval data.
AutoscaleService - Interface in net.imagej.autoscale: Interface for service that works with autoscale algorithms.
averageScale(double, double) - Method in class net.imagej.axis.AbstractCalibratedAxis
averageScale(double, double) - Method in interface net.imagej.axis.CalibratedAxis: Returns the average scale between two raw value coordinates along an axis.
averageScale(int) - Method in class net.imagej.display.DefaultImageDisplay
averageScale(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
averageScale(int) - Method in class net.imagej.interval.CombinedCalibratedRealInterval
averageScale(int) - Method in interface net.imagej.space.CalibratedSpace: Returns the average scale along the given axis, for some reasonable interval.
Axes - Class in net.imagej.axis: An extensible enumeration of dimensional AxisTypes.
axes(CalibratedAxis[]) - Method in class net.imagej.DefaultDataset
axes(CalibratedAxis[]) - Method in class net.imagej.display.DefaultImageDisplay
axes(A[]) - Method in class net.imagej.space.AbstractAnnotatedSpace
axes(A[]) - Method in interface net.imagej.space.AnnotatedSpace: Copies the space's axes into the given array.
axes(A[]) - Method in class net.imagej.space.CombinedSpace
Axis - Interface in net.imagej.axis: A dimensional axis of an AnnotatedSpace.
axis(AxisType) - Method in interface net.imagej.Dataset: Gets the axis of the given type.
axis(int) - Method in class net.imagej.DefaultDataset
axis(int) - Method in class net.imagej.display.DefaultImageDisplay
axis(int) - Method in class net.imagej.space.AbstractAnnotatedSpace
axis(int) - Method in interface net.imagej.space.AnnotatedSpace: Gets the axis associated with the given dimension of the space.
axis(int) - Method in class net.imagej.space.CombinedSpace
AxisActivatedEvent - Class in net.imagej.display.event: An event indicating an axis has become the active one.
AxisActivatedEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisActivatedEvent
AxisEvent - Class in net.imagej.display.event: An event indicating that one of an ImageDisplay's dimensional axes has changed.
AxisEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisEvent
AxisEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisEvent
AxisPositionEvent - Class in net.imagej.display.event: An event indicating that a display's dimensional position has changed.
AxisPositionEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisPositionEvent
AxisPositionEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisPositionEvent
AxisSubrange - Class in net.imagej.sampler: An AxisSubrange defines a set of position indices using various constructors.
AxisSubrange(long) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from a single value.
AxisSubrange(long, long) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from one position to another position and everything in between.
AxisSubrange(long, long, long) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from one position to another position stepping by a given value.
AxisSubrange(ImageDisplay, AxisType, String, boolean) - Constructor for class net.imagej.sampler.AxisSubrange: Create an AxisSubrange from a String definition.
AxisType - Interface in net.imagej.axis: A dimensional axis type, for describing the dimensions of a TypedSpace.

B

b() - Method in class net.imagej.axis.Variable2Axis
bck(int) - Method in class net.imagej.display.AbstractDataView
bck(int) - Method in class net.imagej.display.DefaultImageDisplay
bck() - Method in class net.imagej.Position: Moves the Position backward by one step.
bck(int) - Method in class net.imagej.Position: Moves the Position backward one step in specified dimension.
BigComplex - Class in net.imagej.types: A complex number that stores values in BigDecimal (arbitrary) precision.
BigComplex() - Constructor for class net.imagej.types.BigComplex: Default constructor: value = (0,0).
BigComplex(long, long) - Constructor for class net.imagej.types.BigComplex: Constructor from longs.
BigComplex(double, double) - Constructor for class net.imagej.types.BigComplex: Constructor from doubles.
BigComplex(BigInteger, BigInteger) - Constructor for class net.imagej.types.BigComplex: Constructor from BigIntegers.
BigComplex(BigDecimal, BigDecimal) - Constructor for class net.imagej.types.BigComplex: Constructor from BigDecimals.
BigComplex(String, String) - Constructor for class net.imagej.types.BigComplex: Constructor from Strings.
BinaryMaskOverlay> - Class in net.imagej.overlay: TODO
BinaryMaskOverlay() - Constructor for class net.imagej.overlay.BinaryMaskOverlay
BinaryMaskOverlay(Context) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
BinaryMaskOverlay(Context, BinaryMaskRegionOfInterest<U, V>) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
bitCount() - Method in interface net.imagej.types.DataType: Number of bits of information required to represent data in the type.
bitCount() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
bitCount() - Method in class net.imagej.types.DataType12BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType16BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType16BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType1BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType32BitSignedFloat
bitCount() - Method in class net.imagej.types.DataType32BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType32BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
bitCount() - Method in class net.imagej.types.DataType64BitSignedFloat
bitCount() - Method in class net.imagej.types.DataType64BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType8BitSignedInteger
bitCount() - Method in class net.imagej.types.DataType8BitUnsignedInteger
bitCount() - Method in class net.imagej.types.DataTypeBoolean
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
BLUE - Static variable in class net.imagej.display.ColorTables
BooleanToBooleanTypeConverter - Class in net.imagej.convert: Converts Booleans into BooleanTypes
BooleanToBooleanTypeConverter() - Constructor for class net.imagej.convert.BooleanToBooleanTypeConverter
ByteToByteTypeConverter() - Constructor for class net.imagej.convert.NumberToNumericTypeConverters.ByteToByteTypeConverter
ByteTypeToByteConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.ByteTypeToByteConverter

C

c() - Method in class net.imagej.axis.Variable3Axis
CalibratedAxis - Interface in net.imagej.axis: An axis with an associated AxisType, unit and calibration.
CalibratedRealInterval<A extends CalibratedAxis> - Interface in net.imagej.interval: A CalibratedRealInterval marries a TypedRealInterval with a CalibratedSpace.
CalibratedSpace<A extends CalibratedAxis> - Interface in net.imagej.space: A Euclidean space whose dimensions have units and calibrations.
calibratedValue(double) - Method in interface net.imagej.axis.CalibratedAxis: Returns a calibrated value given a raw position along the axis.
calibratedValue(double) - Method in class net.imagej.axis.ChapmanRichardsAxis
calibratedValue(double) - Method in class net.imagej.axis.DefaultLinearAxis
calibratedValue(double) - Method in class net.imagej.axis.EnumeratedAxis
calibratedValue(double) - Method in class net.imagej.axis.ExponentialAxis
calibratedValue(double) - Method in class net.imagej.axis.ExponentialRecoveryAxis
calibratedValue(double) - Method in class net.imagej.axis.GammaVariateAxis
calibratedValue(double) - Method in class net.imagej.axis.GaussianAxis
calibratedValue(double) - Method in class net.imagej.axis.IdentityAxis
calibratedValue(double) - Method in class net.imagej.axis.InverseRodbardAxis
calibratedValue(double) - Method in class net.imagej.axis.LogLinearAxis
calibratedValue(double) - Method in class net.imagej.axis.PolynomialAxis
calibratedValue(double) - Method in class net.imagej.axis.PowerAxis
calibratedValue(double) - Method in class net.imagej.axis.RodbardAxis
Calibrator - Interface in net.imagej.units: Calibrators map values bidirectionally.
canConvert(Object, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval
canConvert(Object, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
canConvert(Class<?>, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
canConvert(Class<?>, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval: Deprecated.
canConvert(Object, Type) - Method in class net.imagej.convert.ROITreeToMaskPredicateConverter
canConvert(Object, Class<?>) - Method in class net.imagej.convert.ROITreeToMaskPredicateConverter
canConvert(Class<?>, Type) - Method in class net.imagej.roi.AbstractMaskToRAConverter: Deprecated.
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractMaskToRAConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
canConvert(Class<?>, Class<?>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRAToMaskConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRAToMaskConverter
canConvert(Class<?>, Type) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter: Deprecated.
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
canConvert(Class<?>, Class<?>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
canDisplay(Class<?>) - Method in class net.imagej.display.DefaultImageDisplay
canOpen(String) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canOpen(String) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canSave(String) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
canSave(String) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
CanvasEvent - Class in net.imagej.display.event: An event indicating something has happened to an ImageCanvas.
CanvasEvent(ImageCanvas) - Constructor for class net.imagej.display.event.CanvasEvent
canView(Display<?>) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
capitalize(String) - Static method in class net.imagej.util.MediaWikiClient
capture() - Method in interface net.imagej.ui.viewer.image.ImageDisplayViewer
captureScreen() - Method in class net.imagej.display.DummyScreenCaptureService: No-op implementation.
captureScreen() - Method in interface net.imagej.display.ScreenCaptureService
captureScreenRegion(int, int, int, int) - Method in class net.imagej.display.DummyScreenCaptureService: No-op implementation.
captureScreenRegion(int, int, int, int) - Method in interface net.imagej.display.ScreenCaptureService
cast(T, BigComplex) - Method in interface net.imagej.types.DataType: Sets a BigComplex representation from a given variable of the underlying NumericType.
cast(BigComplex, T) - Method in interface net.imagej.types.DataType: Sets a given variable of the underlying NumericType to a value that is closest to a given BigComplex number.
cast(ComplexDoubleType, BigComplex) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
cast(BigComplex, ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
cast(Unsigned12BitType, BigComplex) - Method in class net.imagej.types.DataType12BitUnsignedInteger
cast(BigComplex, Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
cast(ShortType, BigComplex) - Method in class net.imagej.types.DataType16BitSignedInteger
cast(BigComplex, ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
cast(UnsignedShortType, BigComplex) - Method in class net.imagej.types.DataType16BitUnsignedInteger
cast(BigComplex, UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
cast(BitType, BigComplex) - Method in class net.imagej.types.DataType1BitUnsignedInteger
cast(BigComplex, BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
cast(FloatType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedFloat
cast(BigComplex, FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
cast(IntType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedInteger
cast(BigComplex, IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
cast(UnsignedIntType, BigComplex) - Method in class net.imagej.types.DataType32BitUnsignedInteger
cast(BigComplex, UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
cast(ComplexFloatType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
cast(BigComplex, ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
cast(DoubleType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedFloat
cast(BigComplex, DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
cast(LongType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedInteger
cast(BigComplex, LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
cast(ByteType, BigComplex) - Method in class net.imagej.types.DataType8BitSignedInteger
cast(BigComplex, ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
cast(UnsignedByteType, BigComplex) - Method in class net.imagej.types.DataType8BitUnsignedInteger
cast(BigComplex, UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
cast(NativeBoolType, BigComplex) - Method in class net.imagej.types.DataTypeBoolean
cast(BigComplex, NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
cast(DataType, U, DataType<V>, V) - Method in interface net.imagej.types.DataTypeService: Fills an output with a cast from an input given information about their DataTypes.
cast(DataType, U, DataType<V>, V, BigComplex) - Method in interface net.imagej.types.DataTypeService: Fills an output with a cast from an input given information about their DataTypes.
cast(BigComplex, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
cast(PreciseFixedFloatType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
cast(BigComplex, PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
cast(UnboundedIntegerType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
cast(BigComplex, UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
cast(DataType, U, DataType<V>, V) - Method in class net.imagej.types.DefaultDataTypeService
cast(DataType, U, DataType<V>, V, BigComplex) - Method in class net.imagej.types.DefaultDataTypeService
changeUploadPassword(String) - Method in class net.imagej.util.MediaWikiClient
CHANNEL - Static variable in class net.imagej.axis.Axes: Identifies the Channel dimensional type, representing a generic channel dimension.
ChannelCollection - Class in net.imagej: A ChannelCollection maintains a list of data values.
ChannelCollection() - Constructor for class net.imagej.ChannelCollection: Constructs a new empty channel collection.
ChannelCollection(List<Double>) - Constructor for class net.imagej.ChannelCollection: Constructs a new channel collection from a list of Double values.
ChannelCollection(ColorRGB) - Constructor for class net.imagej.ChannelCollection: Constructs a ChannelCollection containing the three RGB values of a given color.
ChapmanRichardsAxis - Class in net.imagej.axis: Implement an axis that uses Chapman and Richards method of scaling.
ChapmanRichardsAxis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.ChapmanRichardsAxis
checkInput() - Method in class net.imagej.minmax.DefaultMinMaxMethod
checkInput() - Method in interface net.imagej.minmax.MinMaxMethod: Verifies method inputs
children() - Method in class net.imagej.roi.DefaultROITree
clear() - Method in class net.imagej.display.DefaultWindowService
clear() - Method in interface net.imagej.display.WindowService: Clears the list of window files.
clear(Dataset) - Method in interface net.imagej.roi.ROIService: Clears all MaskPredicates associated with the given Dataset
clear(Dataset) - Method in interface net.imagej.table.TableService: Clears any Tables associated with the given Dataset.
closedBox(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritableBox with closed boundary behavior.
closedEllipsoid(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates an WritableEllipsoid with closed boundary behavior.
closedPolygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with closed boundary behavior.
closedPolygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with closed boundary behavior.
closedSphere(double[], double) - Method in interface net.imagej.roi.ROIService: Creates a WritableSphere with closed boundary behavior.
closedSuperEllipsoid(double[], double[], double) - Method in interface net.imagej.roi.ROIService: Creates a WritableSuperEllipsoid with closed boundary behavior.
coeff(int) - Method in class net.imagej.axis.PolynomialAxis: Gets the ith coefficient of the polynomial.
ColorMode - Enum in net.imagej.display: The mode to use to display data in a view.
ColorTables - Class in net.imagej.display: Built-in lookup tables.
ColorTableWidget - Interface in net.imagej.widget: Widget interface for color tables.
CombinedCalibratedRealInterval<A extends CalibratedAxis,S extends CalibratedRealInterval<A>> - Class in net.imagej.interval: A CombinedRealInterval that has calibrated axes.
CombinedCalibratedRealInterval() - Constructor for class net.imagej.interval.CombinedCalibratedRealInterval
CombinedRealInterval<A extends TypedAxis,S extends TypedRealInterval<A>> - Class in net.imagej.interval: A CombinedRealInterval is a RealInterval (specifically a TypedRealInterval) which is a union of other TypedRealIntervals.
CombinedRealInterval() - Constructor for class net.imagej.interval.CombinedRealInterval
CombinedRealInterval.MinMax - Class in net.imagej.interval
CombinedSpace<A extends TypedAxis,S extends TypedSpace<A>> - Class in net.imagej.space: A CombinedSpace is a EuclideanSpace (specifically a TypedSpace) which is a union of other TypedSpaces.
CombinedSpace() - Constructor for class net.imagej.space.CombinedSpace
compareTo(Data) - Method in class net.imagej.AbstractData
compareTo(AxisType) - Method in class net.imagej.axis.DefaultAxisType
compareTo(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
compareTo(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
complex(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
complex(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of type ComplexType.
complexConjugate() - Method in class net.imagej.types.BigComplex: Does complex conjugation on self.
complexConjugate() - Method in class net.imagej.types.PreciseFixedComplexFloatType
complexConjugate() - Method in class net.imagej.types.PreciseFixedFloatType
complexConjugate() - Method in class net.imagej.types.UnboundedIntegerType
CompositeOverlay - Class in net.imagej.overlay: A composite of one or more overlays.
CompositeOverlay() - Constructor for class net.imagej.overlay.CompositeOverlay
CompositeOverlay(Context) - Constructor for class net.imagej.overlay.CompositeOverlay
CompositeOverlay(Context, int) - Constructor for class net.imagej.overlay.CompositeOverlay
CompositeOverlay.Operation - Enum in net.imagej.overlay
compute(int, long, long, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
ConciseConverter<I,O> - Class in net.imagej.convert: A more concise abstract base class for converter plugins.
ConciseConverter(Class, Class<O>, Function<I, O>) - Constructor for class net.imagej.convert.ConciseConverter
ConfidenceIntervalAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale: Computes a confidence interval containing percentages of the an entire set of values in an IterableInterval.
ConfidenceIntervalAutoscaleMethod() - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Construct a confidence interval that contains 95% of the data range.
ConfidenceIntervalAutoscaleMethod(double, double) - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Construct a confidence interval with user specified percentages of the data range.
CONFIG_FILE - Static variable in class net.imagej.config.ConfigFileParameters
ConfigFileParameters - Class in net.imagej.config: This class reads launcher configuration parameters from a file and allows them to be maintained.
ConfigFileParameters(Context) - Constructor for class net.imagej.config.ConfigFileParameters: Constructs a ConfigFileParameters object.
ConfigFileParameters(Context, File) - Constructor for class net.imagej.config.ConfigFileParameters: Constructs a ConfigFileParameters object.
constrain(AxisType, AxisSubrange) - Method in class net.imagej.sampler.SamplingDefinition: Replaces the current constraining definition of a given axis within the current SamplingDefinition with a given subrange.
context() - Method in class net.imagej.AbstractData
CONTEXT_MENU_ROOT - Static variable in interface net.imagej.display.ImageDisplay: Pop-up context menu root for image displays.
convert(Object, Class<T>) - Method in class net.imagej.convert.ConciseConverter
convert(I) - Method in class net.imagej.convert.ConciseConverter
convert(List) - Method in class net.imagej.convert.ConvertListToFinalInterval
convert(ImgPlus) - Method in class net.imagej.convert.ImageConverters.ImgPlusToDatasetConverter
convert(ImgPlus) - Method in class net.imagej.convert.ImageConverters.ImgPlusToDatasetViewConverter
convert(ImgPlus) - Method in class net.imagej.convert.ImageConverters.ImgPlusToImageDisplayConverter
convert(Img) - Method in class net.imagej.convert.ImageConverters.ImgToDatasetConverter
convert(Img) - Method in class net.imagej.convert.ImageConverters.ImgToDatasetViewConverter
convert(Img) - Method in class net.imagej.convert.ImageConverters.ImgToImageDisplayConverter
convert(RandomAccessibleInterval) - Method in class net.imagej.convert.ImageConverters.RAIToDatasetConverter
convert(RandomAccessibleInterval) - Method in class net.imagej.convert.ImageConverters.RAIToDatasetViewConverter
convert(RandomAccessibleInterval) - Method in class net.imagej.convert.ImageConverters.RAIToImageDisplayConverter
convert(ImgLabeling) - Method in class net.imagej.convert.ImgLabelingToImgConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
convert(M) - Method in class net.imagej.roi.AbstractMaskToRAConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRAToMaskConverter
convert(R) - Method in class net.imagej.roi.AbstractRAToMaskConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
convert(M) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
convert(R) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
convert(MaskInterval) - Method in class net.imagej.roi.MaskIntervalToRAIConverter
convert(Mask) - Method in class net.imagej.roi.MaskToRAConverter
convert(RandomAccessibleInterval<BoolType>) - Method in class net.imagej.roi.RAIToMaskIntervalConverter
convert(RandomAccessible<BoolType>) - Method in class net.imagej.roi.RAToMaskConverter
convert(RealMaskRealInterval) - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
convert(RealMask) - Method in class net.imagej.roi.RealMaskToRRAConverter
convert(RealRandomAccessibleRealInterval<BoolType>) - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
convert(RealRandomAccessible<BoolType>) - Method in class net.imagej.roi.RRAToRealMaskConverter
convert(MaskAsRandomAccessible<BoolType>) - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
convert(MaskIntervalAsRandomAccessibleInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
convert(RandomAccessibleAsMask<BoolType>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
convert(RandomAccessibleIntervalAsMaskInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
convert(RealMaskAsRealRandomAccessible<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
convert(RealMaskRealIntervalAsRealRandomAccessibleRealInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
convert(RealRandomAccessibleAsRealMask<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
convert(RealRandomAccessibleRealIntervalAsRealMaskRealInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
ConvertIntArrayToFinalInterval - Class in net.imagej.convert: Converter from native int[] array to Dimensions
ConvertIntArrayToFinalInterval() - Constructor for class net.imagej.convert.ConvertIntArrayToFinalInterval
ConvertListToFinalInterval - Class in net.imagej.convert: Converter for converting Lists to FinalInterval.
ConvertListToFinalInterval() - Constructor for class net.imagej.convert.ConvertListToFinalInterval
ConvertLongArrayToFinalInterval - Class in net.imagej.convert: Converter from long[] to FinalInterval.
ConvertLongArrayToFinalInterval() - Constructor for class net.imagej.convert.ConvertLongArrayToFinalInterval
ConvertRAIToIterableInterval - Class in net.imagej.convert: Converts RandomAccessibleInterval to IterableInterval using Views.
ConvertRAIToIterableInterval() - Constructor for class net.imagej.convert.ConvertRAIToIterableInterval
copy() - Method in interface net.imagej.axis.CalibratedAxis: Creates an exact duplicate of this axis.
copy() - Method in class net.imagej.axis.ChapmanRichardsAxis
copy() - Method in class net.imagej.axis.DefaultLinearAxis
copy() - Method in class net.imagej.axis.EnumeratedAxis
copy() - Method in class net.imagej.axis.ExponentialAxis
copy() - Method in class net.imagej.axis.ExponentialRecoveryAxis
copy() - Method in class net.imagej.axis.GammaVariateAxis
copy() - Method in class net.imagej.axis.GaussianAxis
copy() - Method in class net.imagej.axis.IdentityAxis
copy() - Method in class net.imagej.axis.InverseRodbardAxis
copy() - Method in interface net.imagej.axis.LinearAxis
copy() - Method in class net.imagej.axis.LogLinearAxis
copy() - Method in class net.imagej.axis.PolynomialAxis
copy() - Method in class net.imagej.axis.PowerAxis
copy() - Method in class net.imagej.axis.RodbardAxis
copy() - Method in interface net.imagej.Dataset
copy() - Method in class net.imagej.DefaultDataset
copy() - Method in class net.imagej.ImgPlus
copy() - Method in class net.imagej.table.ResultsImg
copy() - Method in class net.imagej.types.BigComplex: Creates a new BigComplex whose values are taken from this BigComplex.
copy() - Method in class net.imagej.types.PreciseFixedComplexFloatType
copy() - Method in class net.imagej.types.PreciseFixedFloatType
copy() - Method in class net.imagej.types.UnboundedIntegerType
copy(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Static method in class net.imagej.util.Images
copyDataFrom(Dataset) - Method in interface net.imagej.Dataset: Changes a Dataset's internal data and metadata to match that from a given Dataset.
copyDataFrom(Dataset) - Method in class net.imagej.DefaultDataset
copyInto(Dataset) - Method in interface net.imagej.Dataset: Copies the dataset's pixels into the given target dataset.
copyInto(Dataset) - Method in class net.imagej.DefaultDataset
create(long...) - Method in class net.imagej.DatasetFactory
create(Dimensions) - Method in class net.imagej.DatasetFactory
create(int[]) - Method in class net.imagej.DatasetFactory
create(long[], RealType<?>) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Dimensions, RealType<?>) - Method in class net.imagej.DatasetFactory: Deprecated.
create(int[], RealType<?>) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Supplier<RealType<?>>, long...) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Supplier<RealType<?>>, Dimensions) - Method in class net.imagej.DatasetFactory: Deprecated.
create(Supplier<RealType<?>>, int[]) - Method in class net.imagej.DatasetFactory: Deprecated.
create(long...) - Method in class net.imagej.DatasetImgFactory
create(Dimensions) - Method in class net.imagej.DatasetImgFactory
create(int[]) - Method in class net.imagej.DatasetImgFactory
create(long[], T) - Method in class net.imagej.DatasetImgFactory: Deprecated.
create(long[], String, AxisType[], int, boolean, boolean) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(long[], String, AxisType[], int, boolean, boolean, boolean) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(T, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(T, long[], String, AxisType[], boolean) - Method in interface net.imagej.DatasetService: Creates a new dataset.
create(ImgFactory<T>, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService: Creates a new dataset using the provided ImgFactory.
create(ImgPlus<T>) - Method in interface net.imagej.DatasetService: Creates a new dataset using the provided ImgPlus.
create(RandomAccessibleInterval<T>) - Method in interface net.imagej.DatasetService: Creates a new dataset using the provided RandomAccessibleInterval.
create(ImgFactory<T>, T, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService: Deprecated.
Use DatasetService.create(ImgFactory, long[], String, AxisType[]) instead.
create(long[], String, AxisType[], int, boolean, boolean) - Method in class net.imagej.DefaultDatasetService
create(long[], String, AxisType[], int, boolean, boolean, boolean) - Method in class net.imagej.DefaultDatasetService
create(T, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService
create(T, long[], String, AxisType[], boolean) - Method in class net.imagej.DefaultDatasetService
create(ImgFactory<T>, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService
create(ImgPlus<T>) - Method in class net.imagej.DefaultDatasetService
create(RandomAccessibleInterval<T>) - Method in class net.imagej.DefaultDatasetService
create(ImgFactory<T>, T, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService: Deprecated.
createDataset(String, ColorTable) - Method in class net.imagej.lut.DefaultLUTService
createDataset(String, ColorTable) - Method in interface net.imagej.lut.LUTService: Creates a new dataset showing the given ColorTable as a ramp.
createDatasetView(Dataset) - Method in interface net.imagej.display.ImageDisplayService: Creates a new DatasetView wrapping the given dataset.
createDataView(Data) - Method in class net.imagej.display.DefaultImageDisplayService
createDataView(Data) - Method in interface net.imagej.display.ImageDisplayService: Creates a new DataView wrapping the given data object.
createImageDisplay(Data) - Method in interface net.imagej.display.ImageDisplayService: Creates an ImageDisplay for the given data object.
createImageDisplay(String, Data) - Method in interface net.imagej.display.ImageDisplayService: Creates an ImageDisplay for the given data object.
createImageDisplay(DataView) - Method in interface net.imagej.display.ImageDisplayService: Creates an ImageDisplay for the given DataView.
createImageDisplay(String, DataView) - Method in interface net.imagej.display.ImageDisplayService: Creates an ImageDisplay for the given DataView.
createPosition() - Method in class net.imagej.Extents: Returns a Position object that can be used to iterate these Extents.
createSampledImage(SamplingDefinition) - Method in class net.imagej.sampler.DefaultSamplerService
createSampledImage(SamplingDefinition) - Method in interface net.imagej.sampler.SamplerService: Creates an output ImageDisplay containing data from an input SamplingDefinition.
createUser(String, String, String, String) - Method in class net.imagej.util.MediaWikiClient
createVariable() - Method in class net.imagej.types.BigComplex: Creates a new BigComplex initialized to (0,0).
createVariable() - Method in interface net.imagej.types.DataType: Returns a variable of the underlying NumericType wrapped by this DataType.
createVariable() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
createVariable() - Method in class net.imagej.types.DataType12BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType16BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType16BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType1BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType32BitSignedFloat
createVariable() - Method in class net.imagej.types.DataType32BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType32BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
createVariable() - Method in class net.imagej.types.DataType64BitSignedFloat
createVariable() - Method in class net.imagej.types.DataType64BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType8BitSignedInteger
createVariable() - Method in class net.imagej.types.DataType8BitUnsignedInteger
createVariable() - Method in class net.imagej.types.DataTypeBoolean
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
createVariable() - Method in class net.imagej.types.PreciseFixedComplexFloatType
createVariable() - Method in class net.imagej.types.PreciseFixedFloatType
createVariable() - Method in class net.imagej.types.UnboundedIntegerType
cursor() - Method in class net.imagej.DefaultDataset
cursor() - Method in class net.imagej.ImgPlus
cursor() - Method in class net.imagej.table.ResultsImg
CYAN - Static variable in class net.imagej.display.ColorTables

D

d() - Method in class net.imagej.axis.Variable4Axis
dashLineStyle - Static variable in class net.imagej.options.OptionsOverlay
Data - Interface in net.imagej: A data object is the superinterface for all types of N-dimensional data displayable in a cartesian space.
data() - Method in interface net.imagej.roi.ROITree
DataCreatedEvent - Class in net.imagej.event: An event indicating a new Data has been created.
DataCreatedEvent(Data) - Constructor for class net.imagej.event.DataCreatedEvent
DataDeletedEvent - Class in net.imagej.event: An event indicating a Data has been deleted.
DataDeletedEvent(Data) - Constructor for class net.imagej.event.DataDeletedEvent
DataModifiedEvent - Class in net.imagej.event: An event indicating a Data has been modified somehow.
DataModifiedEvent(Data) - Constructor for class net.imagej.event.DataModifiedEvent
DataRange - Class in net.imagej.autoscale: DataRange allows one to construct a real interval between two real values.
DataRange(double, double) - Constructor for class net.imagej.autoscale.DataRange: Constructs a data range given two end points of an interval.
DataRestructuredEvent - Class in net.imagej.event: An event indicating a Data's dimensional extents may have changed.
DataRestructuredEvent(Data) - Constructor for class net.imagej.event.DataRestructuredEvent
Dataset - Interface in net.imagej: Dataset is the primary image data structure in ImageJ.
DatasetCreatedEvent - Class in net.imagej.event: An event indicating a new Dataset has been created.
DatasetCreatedEvent(Dataset) - Constructor for class net.imagej.event.DatasetCreatedEvent
DatasetDeletedEvent - Class in net.imagej.event: An event indicating a Dataset has been deleted.
DatasetDeletedEvent(Dataset) - Constructor for class net.imagej.event.DatasetDeletedEvent
DatasetFactory - Class in net.imagej: A factory which produces Datasets.
DatasetFactory(RealType<?>, Dataset, DatasetImgFactory.ImgCreator, Function<Img<?>, Dataset>) - Constructor for class net.imagej.DatasetFactory
DatasetImgFactory<T> - Class in net.imagej: Base class for ImgFactory objects of Dataset implementations.
DatasetImgFactory(T, Dataset, DatasetImgFactory.ImgCreator) - Constructor for class net.imagej.DatasetImgFactory
DatasetRestructuredEvent - Class in net.imagej.event: An event indicating a Dataset's dimensional extents may have changed.
DatasetRestructuredEvent(Dataset) - Constructor for class net.imagej.event.DatasetRestructuredEvent
DatasetRGBChangedEvent - Class in net.imagej.event: An event indicating a Dataset's RGB settings have changed.
DatasetRGBChangedEvent(Dataset) - Constructor for class net.imagej.event.DatasetRGBChangedEvent
DatasetService - Interface in net.imagej: Interface for service that works with Datasets.
DatasetToDatasetViewConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetToDatasetViewConverter
DatasetToImageDisplayConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetToImageDisplayConverter
DatasetToImgConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetToImgConverter
DatasetToImgPlusConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetToImgPlusConverter
DatasetTypeChangedEvent - Class in net.imagej.event: An event indicating a Dataset's type has been changed.
DatasetTypeChangedEvent(Dataset) - Constructor for class net.imagej.event.DatasetTypeChangedEvent
DatasetUpdatedEvent - Class in net.imagej.event: An event indicating a Dataset's data has been updated.
DatasetUpdatedEvent(Dataset, boolean) - Constructor for class net.imagej.event.DatasetUpdatedEvent
DatasetView - Interface in net.imagej.display: A linkage between a Dataset and a Display.
DatasetViewToDatasetConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetViewToDatasetConverter
DatasetViewToImageDisplayConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetViewToImageDisplayConverter
DatasetViewToImgConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetViewToImgConverter
DatasetViewToImgPlusConverter() - Constructor for class net.imagej.convert.ImageConverters.DatasetViewToImgPlusConverter
dataToPanelCoords(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
dataToPanelCoords(RealCoords) - Method in interface net.imagej.display.ImageCanvas: Converts the given data coordinates into panel coordinates.
DataType<T extends NumericType<T>> - Interface in net.imagej.types: DataType represents information about pixel types.
DataType128BitSignedComplexFloat - Class in net.imagej.types: DataType definition for 128-bit complex float numbers.
DataType128BitSignedComplexFloat() - Constructor for class net.imagej.types.DataType128BitSignedComplexFloat
DataType12BitUnsignedInteger - Class in net.imagej.types: DataType definition for 12-bit unsigned integers.
DataType12BitUnsignedInteger() - Constructor for class net.imagej.types.DataType12BitUnsignedInteger
DataType16BitSignedInteger - Class in net.imagej.types: DataType definition for 16-bit signed integers.
DataType16BitSignedInteger() - Constructor for class net.imagej.types.DataType16BitSignedInteger
DataType16BitUnsignedInteger - Class in net.imagej.types: DataType definition for 16-bit unsigned integers.
DataType16BitUnsignedInteger() - Constructor for class net.imagej.types.DataType16BitUnsignedInteger
DataType1BitUnsignedInteger - Class in net.imagej.types: DataType definition for 1-bit unsigned integers.
DataType1BitUnsignedInteger() - Constructor for class net.imagej.types.DataType1BitUnsignedInteger
DataType32BitSignedFloat - Class in net.imagej.types: DataType definition for 32-bit floats.
DataType32BitSignedFloat() - Constructor for class net.imagej.types.DataType32BitSignedFloat
DataType32BitSignedInteger - Class in net.imagej.types: DataType definition for 32-bit signed integers.
DataType32BitSignedInteger() - Constructor for class net.imagej.types.DataType32BitSignedInteger
DataType32BitUnsignedInteger - Class in net.imagej.types: DataType definition for 32-bit unsigned integers.
DataType32BitUnsignedInteger() - Constructor for class net.imagej.types.DataType32BitUnsignedInteger
DataType64BitSignedComplexFloat - Class in net.imagej.types: DataType definition for 64-bit complex float numbers.
DataType64BitSignedComplexFloat() - Constructor for class net.imagej.types.DataType64BitSignedComplexFloat
DataType64BitSignedFloat - Class in net.imagej.types: DataType definition for 64-bit floats.
DataType64BitSignedFloat() - Constructor for class net.imagej.types.DataType64BitSignedFloat
DataType64BitSignedInteger - Class in net.imagej.types: DataType definition for 64-bit signed integers.
DataType64BitSignedInteger() - Constructor for class net.imagej.types.DataType64BitSignedInteger
DataType8BitSignedInteger - Class in net.imagej.types: DataType definition for 8-bit signed integers.
DataType8BitSignedInteger() - Constructor for class net.imagej.types.DataType8BitSignedInteger
DataType8BitUnsignedInteger - Class in net.imagej.types: DataType definition for 8-bit unsigned integers.
DataType8BitUnsignedInteger() - Constructor for class net.imagej.types.DataType8BitUnsignedInteger
DataTypeBoolean - Class in net.imagej.types: DataType definition for boolean.
DataTypeBoolean() - Constructor for class net.imagej.types.DataTypeBoolean
DataTypeService - Interface in net.imagej.types: Service interface that supports runtime discovery of and conversion between DataTypes.
DataTypeVariableBitSignedComplexFloat - Class in net.imagej.types: DataType definition for variable bit complex numbers.
DataTypeVariableBitSignedComplexFloat() - Constructor for class net.imagej.types.DataTypeVariableBitSignedComplexFloat
DataTypeVariableBitSignedFloat - Class in net.imagej.types: DataType definition for variable bit floats.
DataTypeVariableBitSignedFloat() - Constructor for class net.imagej.types.DataTypeVariableBitSignedFloat
DataTypeVariableBitSignedInteger - Class in net.imagej.types: DataType definition for variable bit signed integers.
DataTypeVariableBitSignedInteger() - Constructor for class net.imagej.types.DataTypeVariableBitSignedInteger
DataUpdatedEvent - Class in net.imagej.event: An event indicating a Data's data has been updated.
DataUpdatedEvent(Data) - Constructor for class net.imagej.event.DataUpdatedEvent
DataView - Interface in net.imagej.display: Interface for data views.
DataViewDeselectedEvent - Class in net.imagej.display.event: An event that indicates that a DataView is no longer selected.
DataViewDeselectedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewDeselectedEvent
DataViewEvent - Class in net.imagej.display.event: An event indicating something has happened to a DataView.
DataViewEvent(DataView) - Constructor for class net.imagej.display.event.DataViewEvent
DataViewSelectedEvent - Class in net.imagej.display.event: Event fired when a DataView becomes selected.
DataViewSelectedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewSelectedEvent
DataViewSelectionEvent - Class in net.imagej.display.event: An event that indicates that the selection status of a DataView has changed (i.e., it was either selected or deselected).
DataViewSelectionEvent(DataView, boolean) - Constructor for class net.imagej.display.event.DataViewSelectionEvent
DataViewUpdatedEvent - Class in net.imagej.display.event: This event signals that a DataView's appearance has changed.
DataViewUpdatedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewUpdatedEvent
dec() - Method in class net.imagej.types.PreciseFixedFloatType
dec() - Method in class net.imagej.types.UnboundedIntegerType
decrementReferences() - Method in class net.imagej.AbstractData
decrementReferences() - Method in interface net.imagej.Data: Subtracts from the data object's reference count.
DefaultAnimationService - Class in net.imagej.animation: Default service for working with Animations.
DefaultAnimationService() - Constructor for class net.imagej.animation.DefaultAnimationService
DefaultAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale: Computes a data range from the entire set of values in an IterableInterval.
DefaultAutoscaleMethod() - Constructor for class net.imagej.autoscale.DefaultAutoscaleMethod
DefaultAutoscaleService - Class in net.imagej.autoscale: Default service for working with autoscale methods.
DefaultAutoscaleService() - Constructor for class net.imagej.autoscale.DefaultAutoscaleService
DefaultAxisType - Class in net.imagej.axis: Default AxisType implementation.
DefaultAxisType(String) - Constructor for class net.imagej.axis.DefaultAxisType: Creates a non-spatial AxisType with the given label
DefaultAxisType(String, boolean) - Constructor for class net.imagej.axis.DefaultAxisType: Creates a new AxisType with the given label and spatial status.
DefaultCalibratedRealInterval - Class in net.imagej.interval: Default implementation of CalibratedRealInterval.
DefaultCalibratedRealInterval(RealInterval) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(RealInterval, CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(RealInterval, List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[]) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], double[]) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], double[], CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedRealInterval(double[], double[], List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
DefaultCalibratedSpace - Class in net.imagej.space: Default implementation of CalibratedSpace.
DefaultCalibratedSpace(int) - Constructor for class net.imagej.space.DefaultCalibratedSpace: Constructs a new calibrated space of the given dimensionality, with default IdentityAxis axes of unknown type (Axes.unknown()).
DefaultCalibratedSpace(CalibratedAxis...) - Constructor for class net.imagej.space.DefaultCalibratedSpace: Constructs a new calibrated space with the given axes.
DefaultCalibratedSpace(List<CalibratedAxis>) - Constructor for class net.imagej.space.DefaultCalibratedSpace: Constructs a new calibrated space with the given axes.
DefaultDataset - Class in net.imagej: Default implementation of Dataset.
DefaultDataset(Context, ImgPlus<? extends RealType<?>>) - Constructor for class net.imagej.DefaultDataset
DefaultDatasetService - Class in net.imagej: Default service for working with Datasets.
DefaultDatasetService() - Constructor for class net.imagej.DefaultDatasetService
DefaultDatasetView - Class in net.imagej.display: A view into a Dataset, for use with a ImageDisplay.
DefaultDatasetView() - Constructor for class net.imagej.display.DefaultDatasetView
DefaultDataTypeService - Class in net.imagej.types: The default implementation of the DataTypeService.
DefaultDataTypeService() - Constructor for class net.imagej.types.DefaultDataTypeService
DefaultImageCanvas - Class in net.imagej.display: The DefaultImageCanvas maintains a viewport, a zoom scale and a center coordinate that it uses to map viewport pixels to display coordinates.
DefaultImageCanvas(ImageDisplay) - Constructor for class net.imagej.display.DefaultImageCanvas
DefaultImageDisplay - Class in net.imagej.display: Default implementation of ImageDisplay.
DefaultImageDisplay() - Constructor for class net.imagej.display.DefaultImageDisplay
DefaultImageDisplayService - Class in net.imagej.display: Default service for working with ImageDisplays.
DefaultImageDisplayService() - Constructor for class net.imagej.display.DefaultImageDisplayService
DefaultImageJUIService - Class in net.imagej.ui: Default service for managing ImageJ user interfaces.
DefaultImageJUIService() - Constructor for class net.imagej.ui.DefaultImageJUIService
DefaultImgPlusService - Class in net.imagej: This class allows one to obtain a more specifically typed ImgPlus based on the actual backing type of the data.
DefaultImgPlusService() - Constructor for class net.imagej.DefaultImgPlusService
DefaultLinearAxis - Class in net.imagej.axis: Default implementation of LinearAxis.
DefaultLinearAxis() - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a default LinearAxis.
DefaultLinearAxis(double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified scale.
DefaultLinearAxis(double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified scale and origin.
DefaultLinearAxis(AxisType) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type.
DefaultLinearAxis(AxisType, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type and scale.
DefaultLinearAxis(AxisType, double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type, scale, and origin.
DefaultLinearAxis(AxisType, String) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type and unit.
DefaultLinearAxis(AxisType, String, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type, unit, and scale.
DefaultLinearAxis(AxisType, String, double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis: Construct a LinearAxis of specified type, unit, scale, and origin.
DefaultLinearSpace - Class in net.imagej.space: Default implementation of LinearSpace.
DefaultLinearSpace(int) - Constructor for class net.imagej.space.DefaultLinearSpace
DefaultLinearSpace(LinearAxis...) - Constructor for class net.imagej.space.DefaultLinearSpace
DefaultLinearSpace(List<LinearAxis>) - Constructor for class net.imagej.space.DefaultLinearSpace
DefaultLUTService - Class in net.imagej.lut: The DefaultLUTService loads ColorTables from files (hosted locally or externally).
DefaultLUTService() - Constructor for class net.imagej.lut.DefaultLUTService
DefaultMinMaxMethod<T extends Type<T> & Comparable<T>> - Class in net.imagej.minmax: A MinMaxMethod implementation that forks net.imglib2.algorithm.stats.ComputeMinMax.
DefaultMinMaxMethod() - Constructor for class net.imagej.minmax.DefaultMinMaxMethod
DefaultOverlayService - Class in net.imagej.display: Default service for working with Overlays.
DefaultOverlayService() - Constructor for class net.imagej.display.DefaultOverlayService
DefaultOverlayView - Class in net.imagej.display: A view into an Overlay, for use with a ImageDisplay.
DefaultOverlayView() - Constructor for class net.imagej.display.DefaultOverlayView
DefaultResultsTable - Class in net.imagej.table: Default implementation of ResultsTable.
DefaultResultsTable() - Constructor for class net.imagej.table.DefaultResultsTable: Creates an empty results table.
DefaultResultsTable(int, int) - Constructor for class net.imagej.table.DefaultResultsTable: Creates a results table with the given row and column dimensions.
DefaultROIService - Class in net.imagej.roi: Default implementation of ROIService.
DefaultROIService() - Constructor for class net.imagej.roi.DefaultROIService
DefaultROITree - Class in net.imagej.roi: Default implementation of ROITree.
DefaultROITree() - Constructor for class net.imagej.roi.DefaultROITree: Creates an empty tree of ROIs.
DefaultSamplerService - Class in net.imagej.sampler: Default implementation of SamplerService.
DefaultSamplerService() - Constructor for class net.imagej.sampler.DefaultSamplerService
DefaultTableService - Class in net.imagej.table
DefaultTableService() - Constructor for class net.imagej.table.DefaultTableService
DefaultTypedAxis - Class in net.imagej.axis: Default implementation of TypedAxis.
DefaultTypedAxis() - Constructor for class net.imagej.axis.DefaultTypedAxis
DefaultTypedAxis(AxisType) - Constructor for class net.imagej.axis.DefaultTypedAxis
DefaultTypedSpace - Class in net.imagej.space: Default implementation of TypedSpace.
DefaultTypedSpace(int) - Constructor for class net.imagej.space.DefaultTypedSpace
DefaultTypedSpace(TypedAxis...) - Constructor for class net.imagej.space.DefaultTypedSpace
DefaultTypedSpace(List<TypedAxis>) - Constructor for class net.imagej.space.DefaultTypedSpace
DefaultUnitService - Class in net.imagej.units: Service for defining units and making unit conversions.
DefaultUnitService() - Constructor for class net.imagej.units.DefaultUnitService
DefaultWindowService - Class in net.imagej.display: Default service for keeping track of open windows, including management of the Windows menu.
DefaultWindowService() - Constructor for class net.imagej.display.DefaultWindowService
DefaultZoomService - Class in net.imagej.display: Default service for performing zoom operations on ImageDisplays.
DefaultZoomService() - Constructor for class net.imagej.display.DefaultZoomService
defineUnit(String, String, double) - Method in class net.imagej.units.DefaultUnitService
defineUnit(String, String, double, double) - Method in class net.imagej.units.DefaultUnitService
defineUnit(String, String, Calibrator) - Method in class net.imagej.units.DefaultUnitService
defineUnit(String, String, double) - Method in interface net.imagej.units.UnitService: Defines a unit conversion that can be referred to via the value() method.
defineUnit(String, String, double, double) - Method in interface net.imagej.units.UnitService: Defines a unit conversion that can be referred to via the value() method.
defineUnit(String, String, Calibrator) - Method in interface net.imagej.units.UnitService: Defines a unit conversion that can be referred to via the value() method.
degree() - Method in class net.imagej.axis.PolynomialAxis: Gets the degree of the polynomial (i.e., the largest exponent with a non-zero coefficient).
DELAY_IN_MICROSECONDS - Static variable in class net.imagej.util.MirrorWebsite
DelayedPositionEvent - Class in net.imagej.display.event: An event indicating that a display's dimensional position has changed.
DelayedPositionEvent(ImageDisplay) - Constructor for class net.imagej.display.event.DelayedPositionEvent
DelayedPositionEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.DelayedPositionEvent
delete() - Method in class net.imagej.AbstractData: Informs interested parties that the data object is no longer relevant and should be deleted.
delete() - Method in class net.imagej.DefaultDataset
delete() - Method in class net.imagej.overlay.AbstractOverlay
deleteAll() - Method in class net.imagej.display.OverlayInfoList
deleteOverlay(Overlay) - Method in class net.imagej.display.OverlayInfoList
deleteOverlayInfo(int) - Method in class net.imagej.display.OverlayInfoList
deleteOverlayInfo(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
description() - Method in interface net.imagej.types.DataType: A fuller description that elaborates on the capabilities of the type.
description() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
description() - Method in class net.imagej.types.DataType12BitUnsignedInteger
description() - Method in class net.imagej.types.DataType16BitSignedInteger
description() - Method in class net.imagej.types.DataType16BitUnsignedInteger
description() - Method in class net.imagej.types.DataType1BitUnsignedInteger
description() - Method in class net.imagej.types.DataType32BitSignedFloat
description() - Method in class net.imagej.types.DataType32BitSignedInteger
description() - Method in class net.imagej.types.DataType32BitUnsignedInteger
description() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
description() - Method in class net.imagej.types.DataType64BitSignedFloat
description() - Method in class net.imagej.types.DataType64BitSignedInteger
description() - Method in class net.imagej.types.DataType8BitSignedInteger
description() - Method in class net.imagej.types.DataType8BitUnsignedInteger
description() - Method in class net.imagej.types.DataTypeBoolean
description() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
description() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
description() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
deselectAll() - Method in class net.imagej.display.OverlayInfoList
dimension(AxisType) - Method in interface net.imagej.Dataset: Gets the length of the axis with the given AxisType.
dimension(int) - Method in class net.imagej.DefaultDataset
dimension(int) - Method in class net.imagej.display.DefaultImageDisplay
dimension(int) - Method in class net.imagej.ImgPlus
dimension(int) - Method in class net.imagej.Position: Returns the dimension of the Position's parent Extents at a given i.
dimension(int) - Method in class net.imagej.table.ResultsImg
dimensionIndex(AxisType) - Method in class net.imagej.DefaultDataset
dimensionIndex(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
dimensionIndex(AxisType) - Method in class net.imagej.space.CombinedSpace
dimensionIndex(AxisType) - Method in interface net.imagej.space.TypedSpace: Gets the dimensional index of the axis with the given type.
dimensions(long[]) - Method in class net.imagej.DefaultDataset
dimensions(long[]) - Method in class net.imagej.display.DefaultImageDisplay
dimensions(long[]) - Method in class net.imagej.ImgPlus
dimensions(long[]) - Method in class net.imagej.table.ResultsImg
DimSelectionWidget - Interface in net.imagej.widget: Widget interface for dimension selectors.
display(Object) - Method in class net.imagej.display.DefaultImageDisplay
dispose() - Method in class net.imagej.animation.DefaultAnimationService
dispose() - Method in class net.imagej.display.AbstractDataView
dispose() - Method in interface net.imagej.display.DataView: Discards the view, performing any needed cleanup.
div(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex: Set self to the result of division between two BigComplex values.
div(BigComplex) - Method in class net.imagej.types.BigComplex: Divides self by another BigComplex value.
div(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
div(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
div(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
div(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
div(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
divideCompositeOverlay(CompositeOverlay) - Method in class net.imagej.display.DefaultOverlayService
divideCompositeOverlay(CompositeOverlay) - Method in interface net.imagej.display.OverlayService: Divides a CompositeOverlay into its constituent parts and registers each part with the appropriate displays.
doOperation(CompositeOverlay.Operation, Overlay) - Method in class net.imagej.overlay.CompositeOverlay
dotDashLineStyle - Static variable in class net.imagej.options.OptionsOverlay
dotLineStyle - Static variable in class net.imagej.options.OptionsOverlay
DoubleToDoubleTypeConverter() - Constructor for class net.imagej.convert.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
DoubleTypeToDoubleConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.DoubleTypeToDoubleConverter
drawDot(long, long) - Method in class net.imagej.DrawingTool: Draws a dot in the current UV plane at specified UV coordinates.
DrawingTool - Class in net.imagej: Draws data across all channels in an orthoplane of a Dataset.
DrawingTool(Dataset, RenderingService) - Constructor for class net.imagej.DrawingTool: Creates a DrawingTool to modify a specified Dataset.
drawLine(long, long, long, long) - Method in class net.imagej.DrawingTool: Draws a line from (u1,v1) to (u2,v2).
drawOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
drawOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
drawOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws the outline of a given overlay in a display using the set of channel information provided.
drawOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws the outline of a given overlay in a dataset using the set of channel information provided.
drawPixel(long, long) - Method in class net.imagej.DrawingTool: Draws a pixel in the current UV plane at specified UV coordinates.
drawRect(long, long, long, long) - Method in class net.imagej.DrawingTool: Draws the outline of a rectangle in the current UV plane.
drawText(long, long, String, TextRenderer.TextJustification) - Method in class net.imagej.DrawingTool: Draws a line of text along the U axis
drop(File, Display<?>) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
DummyRenderingService - Class in net.imagej.render: No-op implementation of text rendering service.
DummyRenderingService() - Constructor for class net.imagej.render.DummyRenderingService
DummyScreenCaptureService - Class in net.imagej.display: A No-op implementation of the ScreenCaptureService interface.
DummyScreenCaptureService() - Constructor for class net.imagej.display.DummyScreenCaptureService
DummyTextRenderer - Class in net.imagej.render: A dummy implementation of the TextRenderer interface.
DummyTextRenderer() - Constructor for class net.imagej.render.DummyTextRenderer
duplicate() - Method in interface net.imagej.Dataset: Creates a copy of the dataset.
duplicate() - Method in class net.imagej.DefaultDataset
duplicate() - Method in class net.imagej.overlay.AbstractOverlay
duplicate() - Method in class net.imagej.overlay.BinaryMaskOverlay
duplicate() - Method in interface net.imagej.overlay.Overlay
duplicate(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicate(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a copy of an existing ImageDisplay.
duplicateBlank() - Method in interface net.imagej.Dataset: Creates a copy of the dataset, but without copying any pixel values.
duplicateBlank() - Method in class net.imagej.DefaultDataset
duplicateSelectedCompositePlane(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicateSelectedCompositePlane(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a multichannel copy of the currently selected 2d region of an ImageDisplay.
duplicateSelectedPlane(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicateSelectedPlane(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a copy of the currently selected 2d region of an ImageDisplay.
duplicateSelectedPlanes(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
duplicateSelectedPlanes(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService: Creates a copy of all the planes bounded by the currently selected 2d region of an ImageDisplay.

E

E() - Method in class net.imagej.types.BigComplex: Fills self with the representation of e for the given type.
EllipseOverlay - Class in net.imagej.overlay: An ellipse bounded by an axis-aligned rectangle, backed by an EllipseRegionOfInterest.
EllipseOverlay() - Constructor for class net.imagej.overlay.EllipseOverlay
EllipseOverlay(Context) - Constructor for class net.imagej.overlay.EllipseOverlay
EnumeratedAxis - Class in net.imagej.axis: A CalibratedAxis whose coordinate values are explicitly enumerated by a list.
EnumeratedAxis(AxisType, List<? extends Number>) - Constructor for class net.imagej.axis.EnumeratedAxis: Creates an axis whose calibrated values are defined by the given list of values.
EnumeratedAxis(AxisType, double[]) - Constructor for class net.imagej.axis.EnumeratedAxis: Creates an axis whose calibrated values are defined by the given values array.
EnumeratedAxis(AxisType, String, double[]) - Constructor for class net.imagej.axis.EnumeratedAxis: Creates an axis whose calibrated values are defined by the given values array.
equals(Object) - Method in class net.imagej.axis.AbstractCalibratedAxis
equals(Object) - Method in class net.imagej.axis.EnumeratedAxis
expand(double, double) - Method in class net.imagej.interval.CombinedRealInterval.MinMax
ExponentialAxis - Class in net.imagej.axis: ExponentialAxis is a CalibratedAxis that scales raw values by the equation y = a + b * exp(c + d*x).
ExponentialAxis() - Constructor for class net.imagej.axis.ExponentialAxis
ExponentialAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.ExponentialAxis
ExponentialRecoveryAxis - Class in net.imagej.axis: ExponentialRecoveryAxis is a CalibratedAxis that scales raw values by the equation y = a + b * (1 - exp(c + d*x)).
ExponentialRecoveryAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.ExponentialRecoveryAxis
Extents - Class in net.imagej: This class wraps a pair of min and max dimensions encoded as long[]'s.
Extents(long[]) - Constructor for class net.imagej.Extents: Constructor that takes a dimensional extent and sets min to a zero origin and each max dim i to dims[i]-1.
Extents(long[], long[]) - Constructor for class net.imagej.Extents: Constructor that takes min and max extents.

F

factory() - Method in interface net.imagej.Dataset
factory() - Method in class net.imagej.DefaultDataset
factory() - Method in class net.imagej.ImgPlus
factory() - Method in class net.imagej.table.ResultsImg
fill() - Method in class net.imagej.DrawingTool: Fills the current UV plane.
fill4(long, long, long[]) - Method in class net.imagej.FloodFiller: Does a 4-connected flood fill using the current fill/draw value.
fill8(long, long, long[]) - Method in class net.imagej.FloodFiller: Does an 8-connected flood fill using the current fill/draw value.
fillCircle(long, long) - Method in class net.imagej.DrawingTool: Draws a filled circle in the current UV plane centered at the specified UV coordinates.
fillOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
fillOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
fillOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws and fills the outline of a given overlay in a display using the set of channel information provided.
fillOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in interface net.imagej.display.OverlayService: Draws and fills the outline of a given overlay in a dataset using the set of channel information provided.
fillRect(long, long, long, long) - Method in class net.imagej.DrawingTool: Draws a filled rectangle in the current UV plane.
findIndex(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
findIndex(Overlay) - Method in class net.imagej.display.OverlayInfoList
findLUTs() - Method in class net.imagej.lut.DefaultLUTService
findLUTs() - Method in class net.imagej.lut.LUTFinder: Deprecated.
Use LUTService.findLUTs() instead.
findLUTs() - Method in interface net.imagej.lut.LUTService: Finds the URLs of the LUT files known to ImageJ.
findResources(String, String) - Static method in class net.imagej.util.AppUtils: Finds URLs of resources known to ImageJ.
findResources(String, Iterable<URL>) - Static method in class net.imagej.util.AppUtils: Finds URLs of resources known to ImageJ.
FIRE - Static variable in class net.imagej.display.ColorTables
first() - Method in class net.imagej.Position: Sets the Position to its first state (all dimension positions to min values).
firstElement() - Method in class net.imagej.DefaultDataset
firstElement() - Method in class net.imagej.ImgPlus
firstElement() - Method in class net.imagej.table.ResultsImg
FloatToFloatTypeConverter() - Constructor for class net.imagej.convert.NumberToNumericTypeConverters.FloatToFloatTypeConverter
FloatTypeToFloatConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.FloatTypeToFloatConverter
FloodFiller - Class in net.imagej: This class, which does flood filling, is used by the FloodFillTool.
FloodFiller(DrawingTool) - Constructor for class net.imagej.FloodFiller: Constructs a FloodFiller from a given DrawingTool.
fwd(int) - Method in class net.imagej.display.AbstractDataView
fwd(int) - Method in class net.imagej.display.DefaultImageDisplay
fwd() - Method in class net.imagej.Position: Moves the Position forward by one step.
fwd(int) - Method in class net.imagej.Position: Moves the Position forward one step in specified dimension.

G

GammaVariateAxis - Class in net.imagej.axis: GammaVariateAxis is a CalibratedAxis that scales raw values by the equation y = a * (x-b)^c*exp(-(x-b)/d).
GammaVariateAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.GammaVariateAxis
GaussianAxis - Class in net.imagej.axis: GaussianAxis is a CalibratedAxis that scales raw values by the equation y = a + (b-a)*exp(-(x-c)*(x-c)/(2*d*d)).
GaussianAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.GaussianAxis
generalEquation() - Method in interface net.imagej.axis.CalibratedAxis: Gets the general equation representing values along this axis; for instance: y = m*x + b.
generalEquation() - Method in class net.imagej.axis.ChapmanRichardsAxis
generalEquation() - Method in class net.imagej.axis.DefaultLinearAxis
generalEquation() - Method in class net.imagej.axis.EnumeratedAxis
generalEquation() - Method in class net.imagej.axis.ExponentialAxis
generalEquation() - Method in class net.imagej.axis.ExponentialRecoveryAxis
generalEquation() - Method in class net.imagej.axis.GammaVariateAxis
generalEquation() - Method in class net.imagej.axis.GaussianAxis
generalEquation() - Method in class net.imagej.axis.IdentityAxis
generalEquation() - Method in class net.imagej.axis.InverseRodbardAxis
generalEquation() - Method in class net.imagej.axis.LogLinearAxis
generalEquation() - Method in class net.imagej.axis.PolynomialAxis
generalEquation() - Method in class net.imagej.axis.PowerAxis
generalEquation() - Method in class net.imagej.axis.RodbardAxis
GeneralPathOverlay - Class in net.imagej.overlay: An overlay for the GeneralPathRegionOfInterest.
GeneralPathOverlay(Context) - Constructor for class net.imagej.overlay.GeneralPathOverlay
get(String) - Static method in class net.imagej.axis.Axes: Accessor for an AxisType of the given label.
get(String, boolean) - Static method in class net.imagej.axis.Axes: Accessor for an AxisType of the given label.
get(String) - Method in class net.imagej.axis.VariableAxis: Gets the value of the variable with the given name, or null if none.
get(String) - Static method in enum net.imagej.display.ColorMode
get() - Method in class net.imagej.types.PreciseFixedFloatType
get() - Method in class net.imagej.types.UnboundedIntegerType
getActiveAxis() - Method in class net.imagej.display.DefaultImageDisplay
getActiveAxis() - Method in interface net.imagej.display.ImageDisplay: Gets the axis currently designated as active.
getActiveDataset() - Method in interface net.imagej.display.ImageDisplayService: Gets the active Dataset, if any, of the currently active ImageDisplay.
getActiveDataset(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService: Gets the active Dataset, if any, of the given ImageDisplay.
getActiveDatasetView() - Method in interface net.imagej.display.ImageDisplayService: Gets the active DatasetView, if any, of the currently active ImageDisplay.
getActiveDatasetView(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService: Gets the active DatasetView, if any, of the given ImageDisplay.
getActiveImageDisplay() - Method in class net.imagej.display.DefaultImageDisplayService
getActiveImageDisplay() - Method in interface net.imagej.display.ImageDisplayService: Gets the currently active ImageDisplay.
getActiveOverlay(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
getActiveOverlay(ImageDisplay) - Method in interface net.imagej.display.OverlayService: Returns the active overlay associated with a display
getActivePosition() - Method in interface net.imagej.display.ImageDisplayService: Gets the active Position, if any, of the currently active ImageDisplay.
getActivePosition(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService: Gets the active Position, if any, of the active DatasetView in the given ImageDisplay.
getActiveView() - Method in class net.imagej.display.DefaultImageDisplay
getActiveView() - Method in interface net.imagej.display.ImageDisplay: Gets the view currently designated as active.
getAlpha() - Method in class net.imagej.options.OptionsOverlay
getAlpha() - Method in class net.imagej.overlay.AbstractOverlay
getAlpha() - Method in interface net.imagej.overlay.Overlay
getAlpha() - Method in class net.imagej.overlay.OverlaySettings
getAnimation(ImageDisplay) - Method in interface net.imagej.animation.AnimationService: Gets the given ImageDisplay's corresponding Animation.
getAnimation(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
getAntialiasing() - Method in class net.imagej.render.DummyTextRenderer
getAntialiasing() - Method in interface net.imagej.render.TextRenderer
getArrowColor() - Method in class net.imagej.options.OptionsArrowTool
getArrowSize() - Method in class net.imagej.options.OptionsArrowTool
getArrowStyle() - Method in class net.imagej.options.OptionsArrowTool
getArrowWidth() - Method in class net.imagej.options.OptionsArrowTool
getArtifactId() - Method in class net.imagej.app.ImageJApp
getAttribute(NodeList, String) - Static method in class net.imagej.util.MediaWikiClient
getAutoscaleMethod(String) - Method in interface net.imagej.autoscale.AutoscaleService: Returns the AutoscaleMethod associated with the given name.
getAutoscaleMethod(String) - Method in class net.imagej.autoscale.DefaultAutoscaleService
getAutoscaleMethodNames() - Method in interface net.imagej.autoscale.AutoscaleService: Returns the names of all available AutoscaleMethods, ordered by priority.
getAutoscaleMethodNames() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getAutoscaleMethods() - Method in interface net.imagej.autoscale.AutoscaleService: Returns a map of available AutoscaleMethods, indexed by name.
getAutoscaleMethods() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getAxis() - Method in class net.imagej.animation.Animation: Gets the axis over which to animate.
getAxis() - Method in class net.imagej.display.event.AxisEvent
getAxis() - Method in class net.imagej.display.event.DelayedPositionEvent
getAxisTypes(TypedSpace<A>) - Static method in class net.imagej.space.SpaceUtils: Gets an array of AxisType's delineating the types of the axes of a TypedSpace.
getBaseDirectory() - Static method in class net.imagej.util.AppUtils: Deprecated.
Use App.getBaseDirectory() instead.
getBestZoomLevel(double) - Method in class net.imagej.display.DefaultImageCanvas
getBestZoomLevel(double) - Method in interface net.imagej.display.Zoomable: Gets the closest step-wise zoom factor below the given scale.
getBgValues() - Method in class net.imagej.options.OptionsChannels
getBigInteger() - Method in class net.imagej.types.UnboundedIntegerType
getBitsPerPixel() - Method in class net.imagej.types.PreciseFixedFloatType
getBitsPerPixel() - Method in class net.imagej.types.UnboundedIntegerType
getBytesOfInfo() - Method in interface net.imagej.Dataset
getBytesOfInfo() - Method in class net.imagej.DefaultDataset
getCanvas() - Method in class net.imagej.display.DefaultImageDisplay
getCanvas() - Method in class net.imagej.display.event.CanvasEvent
getCanvas() - Method in interface net.imagej.display.ImageDisplay
getCenter(double[]) - Method in class net.imagej.overlay.AngleOverlay
getCenter(int) - Method in class net.imagej.overlay.AngleOverlay
getChannelCount() - Method in class net.imagej.ChannelCollection: Returns the number of channels in the collection
getChannelCount() - Method in interface net.imagej.display.DatasetView: Gets the number of channels in the displayed data.
getChannelCount() - Method in class net.imagej.display.DefaultDatasetView
getChannelMax(int) - Method in interface net.imagej.display.DatasetView: Gets the maximum value in the display range, for the given channel.
getChannelMax(int) - Method in class net.imagej.display.DefaultDatasetView
getChannelMaximum(int) - Method in class net.imagej.DefaultDataset
getChannelMaximum(int) - Method in interface net.imagej.ImageMetadata: Gets the maximum actual pixel value for the given channel.
getChannelMaximum(int) - Method in class net.imagej.ImgPlus
getChannelMin(int) - Method in interface net.imagej.display.DatasetView: Gets the minimum value in the display range, for the given channel.
getChannelMin(int) - Method in class net.imagej.display.DefaultDatasetView
getChannelMinimum(int) - Method in class net.imagej.DefaultDataset
getChannelMinimum(int) - Method in interface net.imagej.ImageMetadata: Gets the minimum actual pixel value for the given channel.
getChannelMinimum(int) - Method in class net.imagej.ImgPlus
getChannels() - Method in interface net.imagej.Dataset: Gets the length of the Axes.CHANNEL axis, or 1 if no such axis.
getChannels() - Method in class net.imagej.DrawingTool
getChannelValue(long) - Method in class net.imagej.ChannelCollection: Gets the value of a channel in the collection
getColor(ChannelCollection) - Method in interface net.imagej.display.DatasetView
getColor(ChannelCollection) - Method in class net.imagej.display.DefaultDatasetView: Reason from a channel collection and internal state what the closest color is.
getColorMode() - Method in interface net.imagej.display.DatasetView
getColorMode() - Method in class net.imagej.display.DefaultDatasetView
getColorTable(int) - Method in class net.imagej.DefaultDataset
getColorTable(int) - Method in interface net.imagej.ImageMetadata: Gets the color table at the given position.
getColorTable(int) - Method in class net.imagej.ImgPlus
getColorTableCount() - Method in class net.imagej.DefaultDataset
getColorTableCount() - Method in interface net.imagej.ImageMetadata: Gets the number of available ColorTables.
getColorTableCount() - Method in class net.imagej.ImgPlus
getColorTables() - Method in interface net.imagej.display.DatasetView
getColorTables() - Method in class net.imagej.display.DefaultDatasetView
getCompositeChannelCount() - Method in class net.imagej.DefaultDataset
getCompositeChannelCount() - Method in interface net.imagej.ImageMetadata: Gets the number of channels intended to be displayed together.
getCompositeChannelCount() - Method in class net.imagej.ImgPlus
getCompositeDimIndex() - Method in interface net.imagej.display.DatasetView
getCompositeDimIndex() - Method in class net.imagej.display.DefaultDatasetView
getContext() - Method in class net.imagej.AbstractData
getCornerDiameter() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getCursor() - Method in class net.imagej.display.DefaultImageCanvas
getCursor() - Method in interface net.imagej.display.ImageCanvas: Gets the current mouse cursor.
getData() - Method in class net.imagej.display.AbstractDataView
getData() - Method in interface net.imagej.display.DatasetView
getData() - Method in interface net.imagej.display.DataView: Gets the Data represented by this view.
getData() - Method in class net.imagej.display.DefaultDatasetView
getData() - Method in class net.imagej.display.DefaultOverlayView
getData() - Method in interface net.imagej.display.OverlayView
getDataMax() - Method in class net.imagej.widget.HistogramBundle: Gets the maximum value of the actual data range.
getDataMin() - Method in class net.imagej.widget.HistogramBundle: Gets the minimum value of the actual data range.
getDataset() - Method in class net.imagej.DrawingTool: Return the Dataset associated with this DrawingTool.
getDataset(DataView) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
getDatasets() - Method in interface net.imagej.DatasetService: Gets a list of all Datasets.
getDatasets(ImageDisplay) - Method in interface net.imagej.DatasetService: Gets a list of Datasets linked to the given ImageDisplay.
getDatasets() - Method in class net.imagej.DefaultDatasetService
getDatasets(ImageDisplay) - Method in class net.imagej.DefaultDatasetService
getDataType() - Method in class net.imagej.lut.io.LUTIOPlugin
getDataViews() - Method in class net.imagej.display.DefaultImageDisplayService
getDataViews() - Method in interface net.imagej.display.ImageDisplayService: Gets the list of available DataViews.
getDefaultAutoscaleMethod() - Method in interface net.imagej.autoscale.AutoscaleService: Returns the default autoscaling method.
getDefaultAutoscaleMethod() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getDefaultColorTable(int) - Static method in class net.imagej.display.ColorTables: Gets the color table corresponding to a default channel ordering of RGBCMY.
getDefaultIntervalRange(IterableInterval<? extends RealType<?>>) - Method in interface net.imagej.autoscale.AutoscaleService: Calculates the range of interest from the data contained in the given IterableInterval using the default autoscale method.
getDefaultIntervalRange(IterableInterval<? extends RealType<?>>) - Method in class net.imagej.autoscale.DefaultAutoscaleService
getDefaultRandomAccessRange(RandomAccessibleInterval<? extends RealType<?>>) - Method in interface net.imagej.autoscale.AutoscaleService: Calculates the range of interest from the data contained in the given RandomAccessibleInterval using the default autoscale method.
getDefaultRandomAccessRange(RandomAccessibleInterval<? extends RealType<?>>) - Method in class net.imagej.autoscale.DefaultAutoscaleService
getDefaultSettings() - Method in class net.imagej.display.DefaultOverlayService
getDefaultSettings() - Method in interface net.imagej.display.OverlayService
getDepth() - Method in interface net.imagej.Dataset: Gets the length of the Axes.Z axis, or 1 if no such axis.
getDisplay() - Method in class net.imagej.animation.Animation: Gets the display being animated.
getDisplay() - Method in class net.imagej.app.AboutImageJ
getDisplay() - Method in class net.imagej.display.DefaultImageCanvas
getDisplay() - Method in class net.imagej.display.event.ImageDisplayEvent
getDisplay() - Method in interface net.imagej.display.ImageCanvas: Gets the canvas's display.
getDisplay() - Method in class net.imagej.sampler.SamplingDefinition: Returns the input ImageDisplay of the SamplingDefinition.
getDisplay() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
getDisplay() - Method in interface net.imagej.ui.viewer.image.ImageDisplayPanel
getDisplay() - Method in interface net.imagej.ui.viewer.image.ImageDisplayViewer
getDisplays(Overlay) - Method in class net.imagej.display.DefaultOverlayService
getDisplays(Overlay) - Method in interface net.imagej.display.OverlayService: Returns all the displays associated with an overlay
getDisplayService() - Method in class net.imagej.display.DefaultImageDisplayService
getDisplayService() - Method in interface net.imagej.display.ImageDisplayService
getDivByZeroVal() - Method in class net.imagej.options.OptionsMisc
getDoublePosition(int) - Method in class net.imagej.display.AbstractDataView
getDoublePosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getDoublePosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as a double
getEndArrowStyle() - Method in class net.imagej.options.OptionsOverlay
getEndArrowStyle() - Method in class net.imagej.overlay.OverlaySettings
getError() - Method in class net.imagej.sampler.AxisSubrange
getError() - Method in class net.imagej.sampler.SamplingDefinition: Returns the current value of the error string of the SamplingDefinition.
getErrorMessage() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getErrorMessage() - Method in interface net.imagej.minmax.MinMaxMethod
getEventService() - Method in interface net.imagej.animation.AnimationService
getEventService() - Method in class net.imagej.animation.DefaultAnimationService
getEventService() - Method in class net.imagej.display.DefaultImageDisplayService
getEventService() - Method in class net.imagej.display.DefaultWindowService
getEventService() - Method in interface net.imagej.display.ImageDisplayService
getEventService() - Method in interface net.imagej.display.WindowService
getExtent() - Method in class net.imagej.autoscale.DataRange: Returns the extent of the data range (max - min).
getExtent(int) - Method in class net.imagej.overlay.RectangleOverlay
getExtents() - Method in class net.imagej.Position: Returns the parent space Extents associated with this Position.
getFgValues() - Method in class net.imagej.options.OptionsChannels
getFillColor() - Method in class net.imagej.options.OptionsOverlay
getFillColor() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getFillColor() - Method in class net.imagej.overlay.AbstractOverlay
getFillColor() - Method in interface net.imagej.overlay.Overlay
getFillColor() - Method in class net.imagej.overlay.OverlaySettings
getFillOpacity() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getFirst() - Method in class net.imagej.animation.Animation
getFirstDisplay(Overlay) - Method in class net.imagej.display.DefaultOverlayService
getFirstDisplay(Overlay) - Method in interface net.imagej.display.OverlayService: Returns the first display associated with an overlay
getFloatPosition(int) - Method in class net.imagej.display.AbstractDataView
getFloatPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getFloatPosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as a float
getFont() - Method in class net.imagej.options.OptionsFont
getFontFamily() - Method in class net.imagej.DrawingTool: Gets the family name of the drawing font.
getFontFamily() - Method in class net.imagej.render.DummyTextRenderer
getFontFamily() - Method in interface net.imagej.render.TextRenderer
getFontSize() - Method in class net.imagej.DrawingTool: Gets the size of the drawing font.
getFontSize() - Method in class net.imagej.options.OptionsFont
getFontSize() - Method in class net.imagej.render.DummyTextRenderer
getFontSize() - Method in interface net.imagej.render.TextRenderer
getFontStyle() - Method in class net.imagej.DrawingTool: Gets the style of the drawing font.
getFontStyle() - Method in class net.imagej.options.OptionsFont
getFontStyle() - Method in class net.imagej.render.DummyTextRenderer
getFontStyle() - Method in interface net.imagej.render.TextRenderer
getFPS() - Method in class net.imagej.animation.Animation
getFrames() - Method in interface net.imagej.Dataset: Gets the length of the Axes.TIME axis, or 1 if no such axis.
getGroupId() - Method in class net.imagej.app.ImageJApp
getHeight() - Method in interface net.imagej.Dataset: Gets the length of the Axes.Y axis, or 1 if no such axis.
getHeight() - Method in class net.imagej.options.OptionsProfilePlot
getHistogram(int) - Method in class net.imagej.widget.HistogramBundle: Gets the histogram of interest for this HistogramBundle.
getHistogramCount() - Method in class net.imagej.widget.HistogramBundle: Returns the total number of histograms contained in this bundle.
getImag() - Method in class net.imagej.types.BigComplex: Gets imaginary component of this complex number as a BigDecimal.
getImag() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getImageDisplays() - Method in class net.imagej.display.DefaultImageDisplayService
getImageDisplays() - Method in interface net.imagej.display.ImageDisplayService: Gets a list of all available ImageDisplays.
getImaginaryDouble() - Method in class net.imagej.types.BigComplex: Gets imaginary component as a double (narrowing possible).
getImaginaryDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getImaginaryDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getImaginaryDouble() - Method in class net.imagej.types.UnboundedIntegerType
getImaginaryFloat() - Method in class net.imagej.types.BigComplex: Gets imaginary component as a float (narrowing possible).
getImaginaryFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getImaginaryFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getImaginaryFloat() - Method in class net.imagej.types.UnboundedIntegerType
getImg() - Method in class net.imagej.ImgPlus: Gets the backing Img of this ImgPlus.
getImgPlus() - Method in interface net.imagej.Dataset: TODO
getImgPlus() - Method in class net.imagej.DefaultDataset
getIndex() - Method in class net.imagej.Position: Gets the long index from the current Position.
getIndices() - Method in class net.imagej.sampler.AxisSubrange
getInitialScale() - Method in class net.imagej.display.DefaultImageCanvas
getInitialScale() - Method in interface net.imagej.display.Zoomable: Gets the scale to use when reverting after zooming.
getInputAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the AxisTypes that are present in the input data.
getInputCalibratedAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the set of CalibratedAxis's that are present in the input data.
getInputRanges() - Method in class net.imagej.sampler.SamplingDefinition: Returns a multidimensional set of input axis values generated from the input data of this SamplingDefinition.
getInputType() - Method in class net.imagej.convert.ConciseConverter
getInputType() - Method in class net.imagej.roi.MaskIntervalToRAIConverter
getInputType() - Method in class net.imagej.roi.MaskToRAConverter
getInputType() - Method in class net.imagej.roi.RAIToMaskIntervalConverter
getInputType() - Method in class net.imagej.roi.RAToMaskConverter
getInputType() - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
getInputType() - Method in class net.imagej.roi.RealMaskToRRAConverter
getInputType() - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
getInputType() - Method in class net.imagej.roi.RRAToRealMaskConverter
getInputType() - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
getInputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
getInstances() - Method in interface net.imagej.types.DataTypeService: Returns a list of all DataTypes known to system.
getInstances() - Method in class net.imagej.types.DefaultDataTypeService
getInteger() - Method in class net.imagej.types.UnboundedIntegerType
getIntegerLong() - Method in class net.imagej.types.UnboundedIntegerType
getIntPosition(AxisType) - Method in class net.imagej.display.AbstractDataView
getIntPosition(int) - Method in class net.imagej.display.AbstractDataView
getIntPosition(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
getIntPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getIntPosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as an int
getIntPosition(AxisType) - Method in interface net.imagej.PositionableByAxis: Returns the current position in a given dimension.
getJpegQuality() - Method in class net.imagej.options.OptionsInputOutput
getJustification() - Method in class net.imagej.overlay.TextOverlay
getJvmArgs() - Method in class net.imagej.config.ConfigFileParameters: Gets the value associated with the "jvmargs" key in the launcher configuration file.
getLabel() - Method in interface net.imagej.axis.AxisType
getLabel() - Method in class net.imagej.axis.DefaultAxisType
getLabel() - Method in enum net.imagej.display.ColorMode
getLabels() - Static method in enum net.imagej.display.ColorMode
getLast() - Method in class net.imagej.animation.Animation
getLastBgColor() - Method in class net.imagej.options.OptionsChannels
getLastFgColor() - Method in class net.imagej.options.OptionsChannels
getLineColor() - Method in class net.imagej.options.OptionsOverlay
getLineColor() - Method in class net.imagej.overlay.AbstractOverlay
getLineColor() - Method in interface net.imagej.overlay.Overlay
getLineColor() - Method in class net.imagej.overlay.OverlaySettings
getLineEnd(double[]) - Method in class net.imagej.overlay.LineOverlay
getLineEnd(int) - Method in class net.imagej.overlay.LineOverlay
getLineEndArrowStyle() - Method in class net.imagej.overlay.AbstractOverlay
getLineEndArrowStyle() - Method in interface net.imagej.overlay.Overlay
getLineIntercept() - Method in class net.imagej.widget.HistogramBundle: Gets the line equation intercept.
getLineSlope() - Method in class net.imagej.widget.HistogramBundle: Gets the line equation slope.
getLineStart(double[]) - Method in class net.imagej.overlay.LineOverlay
getLineStart(int) - Method in class net.imagej.overlay.LineOverlay
getLineStartArrowStyle() - Method in class net.imagej.overlay.AbstractOverlay
getLineStartArrowStyle() - Method in interface net.imagej.overlay.Overlay
getLineStyle() - Method in class net.imagej.options.OptionsOverlay
getLineStyle() - Method in class net.imagej.overlay.AbstractOverlay
getLineStyle() - Method in interface net.imagej.overlay.Overlay: Get the style of the outline line
getLineStyle() - Method in class net.imagej.overlay.OverlaySettings
getLineWidth() - Method in class net.imagej.DrawingTool: Gets the current drawing line width.
getLineWidth() - Method in class net.imagej.options.OptionsLineWidth
getLineWidth() - Method in class net.imagej.options.OptionsOverlay
getLineWidth() - Method in class net.imagej.overlay.AbstractOverlay
getLineWidth() - Method in interface net.imagej.overlay.Overlay
getLineWidth() - Method in class net.imagej.overlay.OverlaySettings
getLongPosition(AxisType) - Method in class net.imagej.display.AbstractDataView
getLongPosition(int) - Method in class net.imagej.display.AbstractDataView
getLongPosition(AxisType) - Method in class net.imagej.display.DefaultDatasetView
getLongPosition(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
getLongPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
getLongPosition(int) - Method in class net.imagej.Position: Gets the current Position's i'th coordinate as a long
getLongPosition(AxisType) - Method in interface net.imagej.PositionableByAxis: Returns the current position in a given dimension.
getLowerTailProportion() - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Returns the fractional proportion of the distribution to count as in lower tail.
getMarkWidth() - Method in class net.imagej.options.OptionsPointTool
getMax() - Method in class net.imagej.autoscale.DataRange: Returns the largest end point of the data range.
getMax() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getMax() - Method in interface net.imagej.minmax.MinMaxMethod
getMaxBin() - Method in class net.imagej.widget.HistogramBundle: Gets the bin number of the maximum value.
getMaxMemory() - Method in class net.imagej.options.OptionsMemoryAndThreads: Returns the number of megabytes of memory that should be allocated for use by ImageJ.
getMaxValue() - Method in class net.imagej.types.PreciseFixedFloatType
getMaxValue() - Method in class net.imagej.types.UnboundedIntegerType
getMaxY() - Method in class net.imagej.options.OptionsProfilePlot
getMemoryInMB() - Method in class net.imagej.config.ConfigFileParameters: Returns the value of the number of megabytes of ram to allocate that is specified in the launcher config file.
getMenuFontSize() - Method in class net.imagej.options.OptionsAppearance
getMenuService() - Method in class net.imagej.display.DefaultWindowService
getMenuService() - Method in interface net.imagej.display.WindowService
getMin() - Method in class net.imagej.autoscale.DataRange: Returns the smallest end point of the data range.
getMin() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getMin() - Method in interface net.imagej.minmax.MinMaxMethod
getMinBin() - Method in class net.imagej.widget.HistogramBundle: Gets the bin number of the minimum value.
getMinIncrement() - Method in class net.imagej.types.PreciseFixedFloatType
getMinIncrement() - Method in class net.imagej.types.UnboundedIntegerType
getMinValue() - Method in class net.imagej.types.PreciseFixedFloatType
getMinValue() - Method in class net.imagej.types.UnboundedIntegerType
getMinY() - Method in class net.imagej.options.OptionsProfilePlot
getMode() - Method in class net.imagej.options.OptionsWandTool
getModuleService() - Method in class net.imagej.display.DefaultWindowService
getModuleService() - Method in interface net.imagej.display.WindowService
getName() - Method in class net.imagej.AbstractData
getName() - Method in class net.imagej.DefaultDataset
getName() - Method in class net.imagej.ImgPlus
getNumThreads() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getNumThreads() - Method in interface net.imagej.minmax.MinMaxMethod
getObject() - Method in class net.imagej.event.DataCreatedEvent
getObject() - Method in class net.imagej.event.DataDeletedEvent
getObject() - Method in class net.imagej.event.DataModifiedEvent
getObject() - Method in class net.imagej.event.DatasetCreatedEvent
getObject() - Method in class net.imagej.event.DatasetDeletedEvent
getObject() - Method in class net.imagej.event.DatasetRestructuredEvent
getObject() - Method in class net.imagej.event.DatasetUpdatedEvent
getObject() - Method in class net.imagej.event.OverlayCreatedEvent
getObject() - Method in class net.imagej.event.OverlayDeletedEvent
getObject() - Method in class net.imagej.event.OverlayRestructuredEvent
getObject() - Method in class net.imagej.event.OverlayUpdatedEvent
getObjectService() - Method in interface net.imagej.DatasetService
getObjectService() - Method in class net.imagej.DefaultDatasetService
getObjectService() - Method in class net.imagej.display.DefaultOverlayService
getObjectService() - Method in interface net.imagej.display.OverlayService
getOpenWindows() - Method in class net.imagej.display.DefaultWindowService
getOpenWindows() - Method in interface net.imagej.display.WindowService: Gets the list of window files.
getOrigin(int) - Method in class net.imagej.overlay.EllipseOverlay
getOrigin(int) - Method in class net.imagej.overlay.RectangleOverlay
getOutputAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the set of AxisTypes that will be present in the output data.
getOutputCalibratedAxes() - Method in class net.imagej.sampler.SamplingDefinition: Returns the set of CalibratedAxis's that will be present in the output data.
getOutputCalibration(AxisType[]) - Method in class net.imagej.sampler.SamplingDefinition: Deprecated.
getOutputDims() - Method in class net.imagej.sampler.SamplingDefinition: Returns the dimensions that will be present in the output data.
getOutputType() - Method in class net.imagej.convert.ConciseConverter
getOutputType() - Method in class net.imagej.roi.MaskIntervalToRAIConverter
getOutputType() - Method in class net.imagej.roi.MaskToRAConverter
getOutputType() - Method in class net.imagej.roi.RAIToMaskIntervalConverter
getOutputType() - Method in class net.imagej.roi.RAToMaskConverter
getOutputType() - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
getOutputType() - Method in class net.imagej.roi.RealMaskToRRAConverter
getOutputType() - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
getOutputType() - Method in class net.imagej.roi.RRAToRealMaskConverter
getOutputType() - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
getOverlay() - Method in class net.imagej.display.OverlayInfo
getOverlayInfo() - Method in class net.imagej.display.DefaultOverlayService
getOverlayInfo(int) - Method in class net.imagej.display.OverlayInfoList
getOverlayInfo() - Method in interface net.imagej.display.OverlayService: Returns the overlay info list associated with this service.
getOverlayInfoCount() - Method in class net.imagej.display.OverlayInfoList
getOverlays() - Method in class net.imagej.display.DefaultOverlayService
getOverlays(ImageDisplay, boolean) - Method in class net.imagej.display.DefaultOverlayService
getOverlays(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
getOverlays() - Method in interface net.imagej.display.OverlayService: Gets a list of all Overlays.
getOverlays(ImageDisplay, boolean) - Method in interface net.imagej.display.OverlayService: Gets a list of Overlays linked to the given ImageDisplay.
getOverlays(ImageDisplay) - Method in interface net.imagej.display.OverlayService: Gets a list of Overlays linked to the given ImageDisplay.
getPageSource(String) - Method in class net.imagej.util.MediaWikiClient
getPanCenter() - Method in class net.imagej.display.DefaultImageCanvas
getPanCenter() - Method in interface net.imagej.display.Pannable: Gets the coordinates of the data space point currently displayed in the center of the viewport.
getPanOffset() - Method in class net.imagej.display.DefaultImageCanvas
getPanOffset() - Method in interface net.imagej.display.Pannable: Gets the absolute offset of the viewport in pixels from the top left.
getPhase() - Method in class net.imagej.types.BigComplex: Gets phase as a BigDecimal.
getPhase() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPhaseDouble() - Method in class net.imagej.types.BigComplex: Gets phase as a double (narrowing possible).
getPhaseDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPhaseDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getPhaseDouble() - Method in class net.imagej.types.UnboundedIntegerType
getPhaseFloat() - Method in class net.imagej.types.BigComplex: Gets phase as a float (narrowing possible).
getPhaseFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPhaseFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getPhaseFloat() - Method in class net.imagej.types.UnboundedIntegerType
getPixels() - Method in class net.imagej.render.DummyTextRenderer
getPixels() - Method in interface net.imagej.render.TextRenderer
getPixelsHeight() - Method in class net.imagej.render.DummyTextRenderer
getPixelsHeight() - Method in interface net.imagej.render.TextRenderer
getPixelsWidth() - Method in class net.imagej.render.DummyTextRenderer
getPixelsWidth() - Method in interface net.imagej.render.TextRenderer
getPlane(int) - Method in interface net.imagej.Dataset: gets a plane of data from the Dataset.
getPlane(int, boolean) - Method in interface net.imagej.Dataset: gets a plane of data from the Dataset.
getPlane(int) - Method in class net.imagej.DefaultDataset
getPlane(int, boolean) - Method in class net.imagej.DefaultDataset: gets a plane of data from the Dataset.
getPlaneExtents() - Method in class net.imagej.display.DefaultImageDisplay
getPlaneExtents() - Method in interface net.imagej.display.ImageDisplay: Gets a rectangle defining the extents of the image in the current X/Y plane.
getPlanePosition() - Method in class net.imagej.display.AbstractDataView
getPlanePosition() - Method in interface net.imagej.display.DataView: Gets the N-dimensional plane position of this view.
getPluginService() - Method in class net.imagej.display.DefaultImageDisplayService
getPluginService() - Method in interface net.imagej.display.ImageDisplayService
getPluginType() - Method in class net.imagej.autoscale.DefaultAutoscaleService
getPluginType() - Method in class net.imagej.types.DefaultDataTypeService
getPoint(int) - Method in class net.imagej.overlay.PointOverlay
getPoint1(double[]) - Method in class net.imagej.overlay.AngleOverlay
getPoint1(int) - Method in class net.imagej.overlay.AngleOverlay
getPoint2(double[]) - Method in class net.imagej.overlay.AngleOverlay
getPoint2(int) - Method in class net.imagej.overlay.AngleOverlay
getPoints() - Method in class net.imagej.overlay.PointOverlay
getPort() - Method in class net.imagej.options.OptionsProxy
getPosition(long[]) - Method in class net.imagej.DrawingTool: Gets this DrawingHelper's current drawing position.
getPower() - Method in class net.imagej.types.BigComplex: Gets magnitude as a BigDecimal.
getPower() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPowerDouble() - Method in class net.imagej.types.BigComplex: Gets magnitude as a double (narrowing possible).
getPowerDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPowerDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getPowerDouble() - Method in class net.imagej.types.UnboundedIntegerType
getPowerFloat() - Method in class net.imagej.types.BigComplex: Gets magnitude as a float (narrowing possible).
getPowerFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getPowerFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getPowerFloat() - Method in class net.imagej.types.UnboundedIntegerType
getPreferredHeight() - Method in interface net.imagej.display.DataView: Gets the view's natural height in pixels.
getPreferredHeight() - Method in class net.imagej.display.DefaultDatasetView
getPreferredHeight() - Method in class net.imagej.display.DefaultOverlayView
getPreferredSizeX() - Method in class net.imagej.widget.HistogramBundle: Gets the preferred X size of the widget for the rendering of this histogram.
getPreferredSizeY() - Method in class net.imagej.widget.HistogramBundle: Gets the preferred Y size of the widget for the rendering of this histogram.
getPreferredWidth() - Method in interface net.imagej.display.DataView: Gets the view's natural width in pixels.
getPreferredWidth() - Method in class net.imagej.display.DefaultDatasetView
getPreferredWidth() - Method in class net.imagej.display.DefaultOverlayView
getProcessingTime() - Method in class net.imagej.minmax.DefaultMinMaxMethod
getProcessingTime() - Method in interface net.imagej.minmax.MinMaxMethod
getProjector() - Method in interface net.imagej.display.DatasetView
getProjector() - Method in class net.imagej.display.DefaultDatasetView
getProperties() - Method in class net.imagej.DefaultDataset
getProperties() - Method in interface net.imagej.ImageMetadata: Gets a table of key/value pairs associated with the image.
getProperties() - Method in class net.imagej.ImgPlus
getProxyServer() - Method in class net.imagej.options.OptionsProxy
getRadius(int) - Method in class net.imagej.overlay.EllipseOverlay
getRange(IterableInterval<T>) - Method in interface net.imagej.autoscale.AutoscaleMethod: Calculates the range of interest from the data contained in the given IterableInterval.
getRange(IterableInterval<T>) - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
getRange(IterableInterval<T>) - Method in class net.imagej.autoscale.DefaultAutoscaleMethod
getReal() - Method in class net.imagej.types.BigComplex: Gets real component of this complex number as a BigDecimal.
getReal() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getRealDouble() - Method in class net.imagej.types.BigComplex: Gets real component as a double (narrowing possible).
getRealDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getRealDouble() - Method in class net.imagej.types.PreciseFixedFloatType
getRealDouble() - Method in class net.imagej.types.UnboundedIntegerType
getRealFloat() - Method in class net.imagej.types.BigComplex: Gets real component as a float (narrowing possible).
getRealFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
getRealFloat() - Method in class net.imagej.types.PreciseFixedFloatType
getRealFloat() - Method in class net.imagej.types.UnboundedIntegerType
getRegionOfInterest() - Method in class net.imagej.overlay.AbstractOverlay
getRegionOfInterest() - Method in class net.imagej.overlay.AbstractROIOverlay
getRegionOfInterest() - Method in interface net.imagej.overlay.Overlay: Retrieves the ImgLib region of interest, if any, that knows how to determine whether a pixel is included in the overlay.
getROIs(Dataset) - Method in interface net.imagej.roi.ROIService: Returns the ROITree of the given Dataset
getScreenImage() - Method in interface net.imagej.display.DatasetView
getScreenImage() - Method in class net.imagej.display.DefaultDatasetView
getSelectionBounds(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
getSelectionBounds(ImageDisplay) - Method in interface net.imagej.display.OverlayService: Gets the bounding box for the selected overlays in the given ImageDisplay.
getSelectionColor() - Method in class net.imagej.options.OptionsAppearance
getSource() - Method in class net.imagej.DefaultDataset
getSource() - Method in class net.imagej.ImgPlus
getSource() - Method in interface net.imagej.Sourced: Gets the source String
getStackThreads() - Method in class net.imagej.options.OptionsMemoryAndThreads: Returns the number of stack threads that should be allocated for use by ImageJ.
getStartArrowStyle() - Method in class net.imagej.options.OptionsOverlay
getStartArrowStyle() - Method in class net.imagej.overlay.OverlaySettings
getStrokeColor() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getStrokeWidth() - Method in class net.imagej.options.OptionsRoundedRectangleTool
getSubcomponents() - Method in class net.imagej.overlay.CompositeOverlay
getTableFileExtension() - Method in class net.imagej.options.OptionsInputOutput
getTables(Dataset) - Method in class net.imagej.table.DefaultTableService
getTables(Dataset) - Method in interface net.imagej.table.TableService: Retrieves the Tables attached to the given Dataset.
getTargetJavaVersion() - Method in class net.imagej.options.OptionsCompiler
getText() - Method in class net.imagej.overlay.TextOverlay
getTextAntialiasing() - Method in class net.imagej.DrawingTool: Get the drawn text antialiasing value: on (true) or off (false)
getTextRenderer() - Method in class net.imagej.render.DummyRenderingService
getTextRenderer() - Method in interface net.imagej.render.RenderingService
getTheoreticalMax() - Method in class net.imagej.widget.HistogramBundle: Gets the maximum value of the desired range.
getTheoreticalMin() - Method in class net.imagej.widget.HistogramBundle: Gets the minimum value of the desired range.
getTolerance() - Method in class net.imagej.options.OptionsWandTool
getTransparentIndex() - Method in class net.imagej.options.OptionsInputOutput
getType() - Method in interface net.imagej.Dataset: TODO
getType() - Method in class net.imagej.DefaultDataset
getType() - Method in interface net.imagej.types.DataType: Provides an example of the underlying NumericType.
getType() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
getType() - Method in class net.imagej.types.DataType12BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType16BitSignedInteger
getType() - Method in class net.imagej.types.DataType16BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType1BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType32BitSignedFloat
getType() - Method in class net.imagej.types.DataType32BitSignedInteger
getType() - Method in class net.imagej.types.DataType32BitUnsignedInteger
getType() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
getType() - Method in class net.imagej.types.DataType64BitSignedFloat
getType() - Method in class net.imagej.types.DataType64BitSignedInteger
getType() - Method in class net.imagej.types.DataType8BitSignedInteger
getType() - Method in class net.imagej.types.DataType8BitUnsignedInteger
getType() - Method in class net.imagej.types.DataTypeBoolean
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
getType() - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
getTypeByAttributes(int, boolean, boolean, boolean, boolean) - Method in interface net.imagej.types.DataTypeService: Returns the DataType whose internal type class matches the given specifications exactly.
getTypeByAttributes(int, boolean, boolean, boolean, boolean) - Method in class net.imagej.types.DefaultDataTypeService
getTypeByClass(Class<?>) - Method in interface net.imagej.types.DataTypeService: Returns the DataType whose internal type class matches the given typeClass.
getTypeByClass(Class<?>) - Method in class net.imagej.types.DefaultDataTypeService
getTypeByName(String) - Method in interface net.imagej.types.DataTypeService: Returns the DataType whose internal name matches the given typeName.
getTypeByName(String) - Method in class net.imagej.types.DefaultDataTypeService
getTypeLabelLong() - Method in interface net.imagej.Dataset: Gets the full string description of the dataset's pixel type.
getTypeLabelLong() - Method in class net.imagej.DefaultDataset
getTypeLabelShort() - Method in interface net.imagej.Dataset: Gets a short string description of the dataset's pixel type.
getTypeLabelShort() - Method in class net.imagej.DefaultDataset
getUAxis() - Method in class net.imagej.DrawingTool: Returns the index of the U axis of this Drawing Tool.
getUpperTailProportion() - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Returns the fractional proportion of the distribution to count as in upper tail.
getValidBits() - Method in class net.imagej.DefaultDataset
getValidBits() - Method in interface net.imagej.ImageMetadata: Gets the number of valid bits (if applicable to this Img).
getValidBits() - Method in class net.imagej.ImgPlus
getValue() - Method in class net.imagej.display.process.ActiveChannelCollectionPreprocessor
getValue() - Method in class net.imagej.display.process.ActiveOverlayPreprocessor
getValue() - Method in class net.imagej.display.process.ActivePositionPreprocessor
getValue() - Method in class net.imagej.display.process.SingleInputPreprocessor: Gets the single input value to populate.
getVAxis() - Method in class net.imagej.DrawingTool: Returns the index of the V axis of this Drawing Tool.
getView() - Method in class net.imagej.command.AbstractPlanarCommand
getView() - Method in interface net.imagej.command.PlanarCommand
getView() - Method in class net.imagej.display.event.DataViewEvent
getViewportHeight() - Method in class net.imagej.display.DefaultImageCanvas
getViewportHeight() - Method in interface net.imagej.display.ImageCanvas: Gets the current height of the canvas viewport in panel coordinates.
getViewportWidth() - Method in class net.imagej.display.DefaultImageCanvas
getViewportWidth() - Method in interface net.imagej.display.ImageCanvas: Gets the current width of the canvas viewport in panel coordinates.
getWidth() - Method in interface net.imagej.Dataset: Gets the length of the Axes.X axis, or 1 if no such axis.
getWidth() - Method in class net.imagej.options.OptionsProfilePlot
getZoomFactor() - Method in class net.imagej.display.DefaultImageCanvas
getZoomFactor() - Method in interface net.imagej.display.Zoomable: Gets the current zoom level.
getZoomScaleOption() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer: Implement this in the derived class to get the user's preference for displaying zoom scale (as a fraction or percent)
grab(DatasetView, String) - Method in class net.imagej.ImageGrabber: Creates a merged color Dataset from a DatasetView.
GRAYS - Static variable in class net.imagej.display.ColorTables
GREEN - Static variable in class net.imagej.display.ColorTables

H

hasChanges() - Method in class net.imagej.widget.HistogramBundle: Returns true if the bundle has been changed via use of some of the field setting api.
hasDoubleRepresentation() - Method in interface net.imagej.types.DataType: Returns true if data can be encoded in a double with no precision loss.
hasDoubleRepresentation() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
hasDoubleRepresentation() - Method in class net.imagej.types.DataType12BitUnsignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType16BitSignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType16BitUnsignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType1BitUnsignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitSignedFloat
hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitSignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitUnsignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedFloat
hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType8BitSignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataType8BitUnsignedInteger
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeBoolean
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
hashCode() - Method in class net.imagej.axis.AbstractCalibratedAxis
hashCode() - Method in class net.imagej.axis.EnumeratedAxis
hasLongRepresentation() - Method in interface net.imagej.types.DataType: Returns true if data can be encoded in a long with no precision loss.
hasLongRepresentation() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
hasLongRepresentation() - Method in class net.imagej.types.DataType12BitUnsignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType16BitSignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType16BitUnsignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType1BitUnsignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType32BitSignedFloat
hasLongRepresentation() - Method in class net.imagej.types.DataType32BitSignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType32BitUnsignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedFloat
hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType8BitSignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataType8BitUnsignedInteger
hasLongRepresentation() - Method in class net.imagej.types.DataTypeBoolean
hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
hasNext() - Method in class net.imagej.Position: Returns true if position can be moved forward (i.e.
hasPrev() - Method in class net.imagej.Position: Returns true if position can be moved backward (i.e.
hasROIs(Object) - Method in interface net.imagej.roi.ROIService: Check if the given Object is or has ROIs
HistogramBundle - Class in net.imagej.widget: HistogramBundles marry a list of Histogram1ds with addtional rendering information.
HistogramBundle(Histogram1d<?>) - Constructor for class net.imagej.widget.HistogramBundle
HistogramBundle(List<Histogram1d<?>>) - Constructor for class net.imagej.widget.HistogramBundle
HistogramWidget - Interface in net.imagej.widget: Widget interface for charts.

I

ICE - Static variable in class net.imagej.display.ColorTables
IdentityAxis - Class in net.imagej.axis: IdentityAxis is a CalibratedAxis whose raw and calibrated values are the same.
IdentityAxis() - Constructor for class net.imagej.axis.IdentityAxis: Constructs a default IdentityAxis of unknown axis type.
IdentityAxis(AxisType) - Constructor for class net.imagej.axis.IdentityAxis: Constructs an IdentityAxis of the specified axis type.
IdentityAxis(AxisType, String) - Constructor for class net.imagej.axis.IdentityAxis: Constructs an IdentityAxis of the specified axis type and unit.
ImageCanvas - Interface in net.imagej.display: A canvas upon which an ImageDisplay draws its output.
ImageConverters - Class in net.imagej.convert: Converters that convert between image types, including RandomAccessibleInterval, Img, ImgPlus, Dataset, DatasetView, and ImageDisplay.
ImageConverters.DatasetToDatasetViewConverter - Class in net.imagej.convert
ImageConverters.DatasetToImageDisplayConverter - Class in net.imagej.convert
ImageConverters.DatasetToImgConverter - Class in net.imagej.convert
ImageConverters.DatasetToImgPlusConverter - Class in net.imagej.convert
ImageConverters.DatasetViewToDatasetConverter - Class in net.imagej.convert
ImageConverters.DatasetViewToImageDisplayConverter - Class in net.imagej.convert
ImageConverters.DatasetViewToImgConverter - Class in net.imagej.convert
ImageConverters.DatasetViewToImgPlusConverter - Class in net.imagej.convert
ImageConverters.ImageDisplayToDatasetConverter - Class in net.imagej.convert
ImageConverters.ImageDisplayToDatasetViewConverter - Class in net.imagej.convert
ImageConverters.ImageDisplayToImgConverter - Class in net.imagej.convert
ImageConverters.ImageDisplayToImgPlusConverter - Class in net.imagej.convert
ImageConverters.ImgPlusToDatasetConverter - Class in net.imagej.convert
ImageConverters.ImgPlusToDatasetViewConverter - Class in net.imagej.convert
ImageConverters.ImgPlusToImageDisplayConverter - Class in net.imagej.convert
ImageConverters.ImgPlusToImgConverter - Class in net.imagej.convert
ImageConverters.ImgToDatasetConverter - Class in net.imagej.convert
ImageConverters.ImgToDatasetViewConverter - Class in net.imagej.convert
ImageConverters.ImgToImageDisplayConverter - Class in net.imagej.convert
ImageConverters.ImgToImgPlusConverter - Class in net.imagej.convert
ImageConverters.RAIToDatasetConverter - Class in net.imagej.convert
ImageConverters.RAIToDatasetViewConverter - Class in net.imagej.convert
ImageConverters.RAIToImageDisplayConverter - Class in net.imagej.convert
ImageConverters.RAIToImgConverter - Class in net.imagej.convert
ImageConverters.RAIToImgPlusConverter - Class in net.imagej.convert
ImageDisplay - Interface in net.imagej.display: An image display is a Display for visualizing Data objects.
ImageDisplayEvent - Class in net.imagej.display.event: An event indicating something has happened to an ImageDisplay.
ImageDisplayEvent(ImageDisplay) - Constructor for class net.imagej.display.event.ImageDisplayEvent
ImageDisplayPanel - Interface in net.imagej.ui.viewer.image: This is a panel that can go inside a display window.
imageDisplayService - Variable in class net.imagej.command.InteractiveImageCommand
ImageDisplayService - Interface in net.imagej.display: Interface for services that work with ImageDisplays.
ImageDisplayToDatasetConverter() - Constructor for class net.imagej.convert.ImageConverters.ImageDisplayToDatasetConverter
ImageDisplayToDatasetViewConverter() - Constructor for class net.imagej.convert.ImageConverters.ImageDisplayToDatasetViewConverter
ImageDisplayToImgConverter() - Constructor for class net.imagej.convert.ImageConverters.ImageDisplayToImgConverter
ImageDisplayToImgPlusConverter() - Constructor for class net.imagej.convert.ImageConverters.ImageDisplayToImgPlusConverter
ImageDisplayViewer - Interface in net.imagej.ui.viewer.image: A display viewer for DataViews.
ImageGrabber - Class in net.imagej: An ImageGrabber creates a merged color Dataset from a DatasetView.
ImageGrabber(DatasetService) - Constructor for class net.imagej.ImageGrabber: Constructs an ImageGrabber for a given (@link DatasetService}.
ImageJApp - Class in net.imagej.app: Application metadata about ImageJ2.
ImageJApp() - Constructor for class net.imagej.app.ImageJApp
ImageJPlugin - Interface in net.imagej: Top-level interface for ImageJ2 plugins.
ImageJService - Interface in net.imagej: Marker interface for all ImageJ2 Services.
ImageJUIService - Interface in net.imagej.ui: Interface for service that manage ImageJ user interfaces.
ImageMetadata - Interface in net.imagej: Metadata relating to channels and intensity scales.
Images - Class in net.imagej.util: Useful methods for working with images.
img() - Method in class net.imagej.table.DefaultResultsTable
img() - Method in interface net.imagej.table.ResultsTable: Wraps the results table in an ImgLib Img.
imgFactory(S) - Method in class net.imagej.DatasetImgFactory
imgFactory(RandomAccessibleInterval<T>) - Static method in class net.imagej.ImgPlus: Gets an ImgFactory suitable for creating Imgs of the given RandomAccessibleInterval's container, type, and dimensions.
ImgLabelingToImgConverter<T extends IntegerType<T>> - Class in net.imagej.convert: This Converter converts an ImgLabeling to an Img.
ImgLabelingToImgConverter() - Constructor for class net.imagej.convert.ImgLabelingToImgConverter
ImgPlus<T> - Class in net.imagej: A simple container for storing an Img together with its metadata.
ImgPlus(Img<T>) - Constructor for class net.imagej.ImgPlus
ImgPlus(Img<T>, String) - Constructor for class net.imagej.ImgPlus
ImgPlus(Img<T>, String, AxisType[]) - Constructor for class net.imagej.ImgPlus
ImgPlus(Img<T>, ImgPlusMetadata) - Constructor for class net.imagej.ImgPlus
ImgPlus(Img<T>, ImgPlusMetadata, boolean) - Constructor for class net.imagej.ImgPlus: As ImgPlus(Img, ImgPlusMetadata) but with a flag to determine if metadata beyond axis information is copied.
ImgPlus(Img<T>, String, AxisType[], double[]) - Constructor for class net.imagej.ImgPlus
ImgPlus(Img<T>, String, AxisType[], double[], String[]) - Constructor for class net.imagej.ImgPlus
ImgPlus(Img<T>, String, CalibratedAxis...) - Constructor for class net.imagej.ImgPlus
ImgPlusMetadata - Interface in net.imagej: An interface which collects all metadata associated with an ImgPlus.
ImgPlusService - Interface in net.imagej: ImgPlusService is an ImageJService that allows one to cast weakly typed ImgPluses to more strongly typed versions.
ImgPlusToDatasetConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgPlusToDatasetConverter
ImgPlusToDatasetViewConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgPlusToDatasetViewConverter
ImgPlusToImageDisplayConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgPlusToImageDisplayConverter
ImgPlusToImgConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgPlusToImgConverter
ImgToDatasetConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgToDatasetConverter
ImgToDatasetViewConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgToDatasetViewConverter
ImgToImageDisplayConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgToImageDisplayConverter
ImgToImgPlusConverter() - Constructor for class net.imagej.convert.ImageConverters.ImgToImgPlusConverter
inc() - Method in class net.imagej.types.PreciseFixedFloatType
inc() - Method in class net.imagej.types.UnboundedIntegerType
incrementReferences() - Method in class net.imagej.AbstractData
incrementReferences() - Method in interface net.imagej.Data: Adds to the data object's reference count.
init() - Method in class net.imagej.lut.LUTSelector
initialize() - Method in class net.imagej.animation.DefaultAnimationService
initialize() - Method in class net.imagej.DefaultDatasetService
initialize() - Method in class net.imagej.DefaultImgPlusService
initialize(Data) - Method in class net.imagej.display.AbstractDataView
initialize(Data) - Method in interface net.imagej.display.DataView: Initializes the view with the given Data.
initialize() - Method in class net.imagej.display.DefaultImageDisplayService
initialize() - Method in class net.imagej.display.DefaultWindowService
initialize() - Method in class net.imagej.lut.DefaultLUTService
initialize(Img<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
initialize(IterableInterval<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
initialize(RandomAccessibleInterval<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
initialize(Img<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod
initialize(IterableInterval<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod
initialize(RandomAccessibleInterval<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod
initialize(Img<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod: Sets the provided Img as the target interval for computation, as well as initial min and max values.
initialize(IterableInterval<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod: Sets the target interval for computation, as well as initial min and max values.
initialize(RandomAccessibleInterval<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod: Sets the target interval for computation, as well as initial min and max values.
initialize(Img<T>) - Method in interface net.imagej.minmax.MinMaxMethod: Sets the provided Img as the target interval for computation.
initialize(IterableInterval<T>) - Method in interface net.imagej.minmax.MinMaxMethod: Sets the target interval for computation.
initialize(RandomAccessibleInterval<T>) - Method in interface net.imagej.minmax.MinMaxMethod: Sets the target interval for computation.
initialize() - Method in class net.imagej.render.DummyRenderingService
initialize() - Method in class net.imagej.types.DefaultDataTypeService
initializeCheck() - Method in class net.imagej.minmax.AbstractMinMaxMethod: Throws an exception if this MinMaxMethod has not been initialized.
initializeColorTables(int) - Method in class net.imagej.DefaultDataset
initializeColorTables(int) - Method in interface net.imagej.ImageMetadata: Sets the number of available color tables to the given value.
initializeColorTables(int) - Method in class net.imagej.ImgPlus
initialized - Variable in class net.imagej.minmax.AbstractMinMaxMethod
integer(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
integer(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of type IntegerType.
IntegerToIntTypeConverter() - Constructor for class net.imagej.convert.NumberToNumericTypeConverters.IntegerToIntTypeConverter
IntegerTypeToBigIntegerConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.IntegerTypeToBigIntegerConverter
InteractiveImageCommand - Class in net.imagej.command: An extension of InteractiveCommand which supports syncing DatasetView and Dataset inputs in addition to only Displays.
InteractiveImageCommand(String...) - Constructor for class net.imagej.command.InteractiveImageCommand: Creates a new interactive image command.
intercept(double, double, double, double) - Static method in class net.imagej.axis.DefaultLinearAxis: Returns the y intercept of the line connecting two points.
IntTypeToIntegerConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.IntTypeToIntegerConverter
InverseRodbardAxis - Class in net.imagej.axis: InverseRodbardAxis is a CalibratedAxis that scales raw values by the equation y = a*((x-b)/(c-x))^(1/d).
InverseRodbardAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.InverseRodbardAxis
isActive() - Method in class net.imagej.animation.Animation: Returns true if the animation is currently running.
isAddToRoiMgr() - Method in class net.imagej.options.OptionsPointTool
isAntialiasedToolIcons() - Method in class net.imagej.options.OptionsAppearance
isArrowDoubleHeaded() - Method in class net.imagej.options.OptionsArrowTool
isArrowOutline() - Method in class net.imagej.options.OptionsArrowTool
isAutoClose() - Method in class net.imagej.options.OptionsProfilePlot
isAutoMeasure() - Method in class net.imagej.options.OptionsPointTool
isAutoNextSlice() - Method in class net.imagej.options.OptionsPointTool
isBackAndForth() - Method in class net.imagej.animation.Animation
isBlackCanvas() - Method in class net.imagej.options.OptionsAppearance
isBoolType(RandomAccessible<?>) - Static method in class net.imagej.roi.MaskConversionUtil
isBoolType(RealRandomAccessible<?>) - Static method in class net.imagej.roi.MaskConversionUtil
isBoolType(Type) - Static method in class net.imagej.roi.MaskConversionUtil
isBounded() - Method in interface net.imagej.types.DataType: Returns true if DataType is fully bounded (bounded below and bounded above).
isBounded() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
isBounded() - Method in class net.imagej.types.DataType12BitUnsignedInteger
isBounded() - Method in class net.imagej.types.DataType16BitSignedInteger
isBounded() - Method in class net.imagej.types.DataType16BitUnsignedInteger
isBounded() - Method in class net.imagej.types.DataType1BitUnsignedInteger
isBounded() - Method in class net.imagej.types.DataType32BitSignedFloat
isBounded() - Method in class net.imagej.types.DataType32BitSignedInteger
isBounded() - Method in class net.imagej.types.DataType32BitUnsignedInteger
isBounded() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
isBounded() - Method in class net.imagej.types.DataType64BitSignedFloat
isBounded() - Method in class net.imagej.types.DataType64BitSignedInteger
isBounded() - Method in class net.imagej.types.DataType8BitSignedInteger
isBounded() - Method in class net.imagej.types.DataType8BitUnsignedInteger
isBounded() - Method in class net.imagej.types.DataTypeBoolean
isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
isCapitalized(String) - Static method in class net.imagej.util.MediaWikiClient
isClearAll() - Method in class net.imagej.app.Preferences
isCompatible(Data) - Method in interface net.imagej.display.DataView: Gets whether this view is compatible with the given Data.
isCompatible(Data) - Method in class net.imagej.display.DefaultDatasetView
isCompatible(Data) - Method in class net.imagej.display.DefaultOverlayView
isComplex() - Method in interface net.imagej.types.DataType: Returns true if this DataType is a complex number (imaginary component is changeable).
isComplex() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
isComplex() - Method in class net.imagej.types.DataType12BitUnsignedInteger
isComplex() - Method in class net.imagej.types.DataType16BitSignedInteger
isComplex() - Method in class net.imagej.types.DataType16BitUnsignedInteger
isComplex() - Method in class net.imagej.types.DataType1BitUnsignedInteger
isComplex() - Method in class net.imagej.types.DataType32BitSignedFloat
isComplex() - Method in class net.imagej.types.DataType32BitSignedInteger
isComplex() - Method in class net.imagej.types.DataType32BitUnsignedInteger
isComplex() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
isComplex() - Method in class net.imagej.types.DataType64BitSignedFloat
isComplex() - Method in class net.imagej.types.DataType64BitSignedInteger
isComplex() - Method in class net.imagej.types.DataType8BitSignedInteger
isComplex() - Method in class net.imagej.types.DataType8BitUnsignedInteger
isComplex() - Method in class net.imagej.types.DataTypeBoolean
isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
isCopyColumnHeaders() - Method in class net.imagej.options.OptionsInputOutput
isCopyRowNumbers() - Method in class net.imagej.options.OptionsInputOutput
isDebugMode() - Method in class net.imagej.options.OptionsMisc
isDirty() - Method in interface net.imagej.Dataset: TODO
isDirty() - Method in class net.imagej.DefaultDataset
isDisplayFractionalScales() - Method in class net.imagej.options.OptionsAppearance
isDisplaying(Object) - Method in class net.imagej.display.DefaultImageDisplay
isDrawGridLines() - Method in class net.imagej.options.OptionsProfilePlot
isExitWhenQuitting() - Method in class net.imagej.options.OptionsMisc
isFloat() - Method in interface net.imagej.types.DataType: Returns true if this DataType represents a floating point number.
isFloat() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
isFloat() - Method in class net.imagej.types.DataType12BitUnsignedInteger
isFloat() - Method in class net.imagej.types.DataType16BitSignedInteger
isFloat() - Method in class net.imagej.types.DataType16BitUnsignedInteger
isFloat() - Method in class net.imagej.types.DataType1BitUnsignedInteger
isFloat() - Method in class net.imagej.types.DataType32BitSignedFloat
isFloat() - Method in class net.imagej.types.DataType32BitSignedInteger
isFloat() - Method in class net.imagej.types.DataType32BitUnsignedInteger
isFloat() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
isFloat() - Method in class net.imagej.types.DataType64BitSignedFloat
isFloat() - Method in class net.imagej.types.DataType64BitSignedInteger
isFloat() - Method in class net.imagej.types.DataType8BitSignedInteger
isFloat() - Method in class net.imagej.types.DataType8BitUnsignedInteger
isFloat() - Method in class net.imagej.types.DataTypeBoolean
isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
isFontSmooth() - Method in class net.imagej.options.OptionsFont
isFullZoomImages() - Method in class net.imagej.options.OptionsAppearance
isGenerateDebugInfo() - Method in class net.imagej.options.OptionsCompiler
isGrayColorTable(ColorTable) - Static method in class net.imagej.display.ColorTables: Tests whether a ColorTable consists of gray values.
isHideProcessStackDialog() - Method in class net.imagej.options.OptionsMisc
isInImage(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
isInImage(IntCoords) - Method in interface net.imagej.display.ImageCanvas: Tests whether a given point in the panel falls within the boundaries of the display space.
isInteger() - Method in interface net.imagej.Dataset: TODO
isInteger() - Method in class net.imagej.DefaultDataset
isInterpLineProf() - Method in class net.imagej.options.OptionsProfilePlot
isInterpZoomedImages() - Method in class net.imagej.options.OptionsAppearance
isInvertModeLegacy() - Method in class net.imagej.options.OptionsCompatibility
isInvertModeModern() - Method in class net.imagej.options.OptionsCompatibility
isLabelPoints() - Method in class net.imagej.options.OptionsPointTool
isListValues() - Method in class net.imagej.options.OptionsProfilePlot
isLUT(File) - Method in class net.imagej.lut.DefaultLUTService
isLUT(File) - Method in interface net.imagej.lut.LUTService: Gets whether the given file can be parsed as a color table by LUTService.loadLUT(File).
isMetaDataOnly() - Method in class net.imagej.event.DatasetUpdatedEvent
isMoveIsolatedPlugins() - Method in class net.imagej.options.OptionsMisc
isMultipleBuffers() - Method in class net.imagej.options.OptionsMemoryAndThreads: Returns true if ImageJ will maintain multiple undo buffers.
isNoImageBorder() - Method in class net.imagej.options.OptionsAppearance
isNoSaveXValues() - Method in class net.imagej.options.OptionsProfilePlot
isOpenAs32bitFloat() - Method in class net.imagej.options.OptionsDicom
isPlanar() - Method in class net.imagej.command.AbstractPlanarCommand
isPlanar() - Method in interface net.imagej.command.PlanarCommand
isRequireCommandKey() - Method in class net.imagej.options.OptionsMisc
isRGBMerged() - Method in interface net.imagej.Dataset: For use in legacy layer only, this flag allows the various legacy layer image translators to support color images correctly.
isRGBMerged() - Method in class net.imagej.DefaultDataset
isRotateXZ() - Method in class net.imagej.options.OptionsDicom
isRotateYZ() - Method in class net.imagej.options.OptionsDicom
isRunGcOnClick() - Method in class net.imagej.options.OptionsMemoryAndThreads: Returns true if ImageJ will run the garbage collector when user clicks on the status area.
isRunSingleInstanceListener() - Method in class net.imagej.options.OptionsMisc
isSaveColumnHeaders() - Method in class net.imagej.options.OptionsInputOutput
isSaveOrderIntel() - Method in class net.imagej.options.OptionsInputOutput
isSaveRowNumbers() - Method in class net.imagej.options.OptionsInputOutput
isScaleWhenConverting() - Method in class net.imagej.options.OptionsConversions
isSelected() - Method in class net.imagej.display.AbstractDataView
isSelected() - Method in interface net.imagej.display.DataView
isSelected() - Method in class net.imagej.display.event.DataViewSelectionEvent
isSelected() - Method in class net.imagej.display.OverlayInfo
isSigned() - Method in interface net.imagej.Dataset: TODO
isSigned() - Method in class net.imagej.DefaultDataset
isSigned() - Method in interface net.imagej.types.DataType: Returns true if this DataType represents a signed number.
isSigned() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
isSigned() - Method in class net.imagej.types.DataType12BitUnsignedInteger
isSigned() - Method in class net.imagej.types.DataType16BitSignedInteger
isSigned() - Method in class net.imagej.types.DataType16BitUnsignedInteger
isSigned() - Method in class net.imagej.types.DataType1BitUnsignedInteger
isSigned() - Method in class net.imagej.types.DataType32BitSignedFloat
isSigned() - Method in class net.imagej.types.DataType32BitSignedInteger
isSigned() - Method in class net.imagej.types.DataType32BitUnsignedInteger
isSigned() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
isSigned() - Method in class net.imagej.types.DataType64BitSignedFloat
isSigned() - Method in class net.imagej.types.DataType64BitSignedInteger
isSigned() - Method in class net.imagej.types.DataType8BitSignedInteger
isSigned() - Method in class net.imagej.types.DataType8BitUnsignedInteger
isSigned() - Method in class net.imagej.types.DataTypeBoolean
isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
isSpatial() - Method in interface net.imagej.axis.AxisType
isSpatial() - Method in class net.imagej.axis.DefaultAxisType
isUseInvertingLUT() - Method in class net.imagej.options.OptionsAppearance
isUseJFileChooser() - Method in class net.imagej.options.OptionsInputOutput
isUsePtrCursor() - Method in class net.imagej.options.OptionsMisc
isUseSystemProxy() - Method in class net.imagej.options.OptionsProxy
isVertProfile() - Method in class net.imagej.options.OptionsProfilePlot
isVisible(DataView) - Method in class net.imagej.display.DefaultImageDisplay
isVisible(DataView) - Method in interface net.imagej.display.ImageDisplay: Tests whether the given view should currently be visible in this display.
isWeightedRgbConversions() - Method in class net.imagej.options.OptionsConversions
isXY() - Method in interface net.imagej.axis.AxisType
isXY() - Method in class net.imagej.axis.DefaultAxisType
isYFixedScale() - Method in class net.imagej.options.OptionsProfilePlot
iterationOrder() - Method in class net.imagej.DefaultDataset
iterationOrder() - Method in class net.imagej.ImgPlus
iterationOrder() - Method in class net.imagej.table.ResultsImg
iterator() - Method in class net.imagej.DefaultDataset
iterator() - Method in class net.imagej.ImgPlus
iterator() - Method in class net.imagej.table.ResultsImg

J

jumpBck(long) - Method in class net.imagej.Position: Moves the Position backward the given number of steps.
jumpFwd(long) - Method in class net.imagej.Position: Moves the Position forward the given number of steps.

K

kDTreeRealPointCollection(KDTree<L>) - Method in interface net.imagej.roi.ROIService: Creates a read-only RealPointCollection containing the given points.
kDTreeRealPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService: Creates a read-only RealPointCollection containing the given points.
knownTypes() - Static method in class net.imagej.axis.Axes

L

last() - Method in class net.imagej.Position: Sets the Position to its last state (all dimension positions to max-1)
line(RealLocalizable, RealLocalizable) - Method in interface net.imagej.roi.ROIService: Creates a WritableLine with the given endpoints.
line(double[], double[], boolean) - Method in interface net.imagej.roi.ROIService: Creates a WritableLine with the given endpoints.
LinearAxis - Interface in net.imagej.axis: A CalibratedAxis that scales coordinates along the axis in a linear fashion.
LinearCalibrator - Class in net.imagej.units: LinearCalibrator is a Calibrator that maps values linearly from an input space to an output space.
LinearCalibrator(double, double) - Constructor for class net.imagej.units.LinearCalibrator
LinearSpace<A extends LinearAxis> - Interface in net.imagej.space: A CalibratedSpace whose axes are of type LinearAxis.
LineOverlay - Class in net.imagej.overlay: Represents a line going from here to there, possibly with arrows on one end, the other or both.
LineOverlay() - Constructor for class net.imagej.overlay.LineOverlay
LineOverlay(Context) - Constructor for class net.imagej.overlay.LineOverlay
LineOverlay(Context, double[], double[]) - Constructor for class net.imagej.overlay.LineOverlay
lineTo(long, long) - Method in class net.imagej.DrawingTool: Draws a line in the current UV plane from the current origin to the specified coordinate.
load() - Method in class net.imagej.options.OptionsChannels
load() - Method in class net.imagej.options.OptionsMemoryAndThreads: Loads the instance variable fields from persistent storage.
loadLUT(File) - Method in class net.imagej.lut.DefaultLUTService
loadLUT(URL) - Method in class net.imagej.lut.DefaultLUTService
loadLUT(InputStream) - Method in class net.imagej.lut.DefaultLUTService
loadLUT(InputStream, int) - Method in class net.imagej.lut.DefaultLUTService
loadLUT(File) - Method in interface net.imagej.lut.LUTService: Loads a ColorTable from a File.
loadLUT(URL) - Method in interface net.imagej.lut.LUTService: Loads a ColorTable from a URL.
loadLUT(InputStream) - Method in interface net.imagej.lut.LUTService: Loads a ColorTable from an input stream.
loadLUT(InputStream, int) - Method in interface net.imagej.lut.LUTService: Loads a ColorTable from an input stream with the given expected length.
localize(int[]) - Method in class net.imagej.display.AbstractDataView
localize(long[]) - Method in class net.imagej.display.AbstractDataView
localize(float[]) - Method in class net.imagej.display.AbstractDataView
localize(double[]) - Method in class net.imagej.display.AbstractDataView
localize(int[]) - Method in class net.imagej.display.DefaultImageDisplay
localize(long[]) - Method in class net.imagej.display.DefaultImageDisplay
localize(float[]) - Method in class net.imagej.display.DefaultImageDisplay
localize(double[]) - Method in class net.imagej.display.DefaultImageDisplay
localize(int[]) - Method in class net.imagej.Position: Populates a given int[] with the current Position's coordinates
localize(long[]) - Method in class net.imagej.Position: Populates a given long[] with the current Position's coordinates
localize(float[]) - Method in class net.imagej.Position: Populates a given float[] with the current Position's coordinates
localize(double[]) - Method in class net.imagej.Position: Populates a given double[] with the current Position's coordinates
localizingCursor() - Method in class net.imagej.DefaultDataset
localizingCursor() - Method in class net.imagej.ImgPlus
localizingCursor() - Method in class net.imagej.table.ResultsImg
login(String, String) - Method in class net.imagej.util.MediaWikiClient
LogLinearAxis - Class in net.imagej.axis: LogLinearAxis is a CalibratedAxis that scales raw values by the equation y = a + b * ln(c + d*x).
LogLinearAxis() - Constructor for class net.imagej.axis.LogLinearAxis
LogLinearAxis(AxisType) - Constructor for class net.imagej.axis.LogLinearAxis
LogLinearAxis(AxisType, String) - Constructor for class net.imagej.axis.LogLinearAxis
LogLinearAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.LogLinearAxis
logout() - Method in class net.imagej.util.MediaWikiClient
longName() - Method in interface net.imagej.types.DataType: A long name useful for displaying to user.
longName() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
longName() - Method in class net.imagej.types.DataType12BitUnsignedInteger
longName() - Method in class net.imagej.types.DataType16BitSignedInteger
longName() - Method in class net.imagej.types.DataType16BitUnsignedInteger
longName() - Method in class net.imagej.types.DataType1BitUnsignedInteger
longName() - Method in class net.imagej.types.DataType32BitSignedFloat
longName() - Method in class net.imagej.types.DataType32BitSignedInteger
longName() - Method in class net.imagej.types.DataType32BitUnsignedInteger
longName() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
longName() - Method in class net.imagej.types.DataType64BitSignedFloat
longName() - Method in class net.imagej.types.DataType64BitSignedInteger
longName() - Method in class net.imagej.types.DataType8BitSignedInteger
longName() - Method in class net.imagej.types.DataType8BitUnsignedInteger
longName() - Method in class net.imagej.types.DataTypeBoolean
longName() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
longName() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
longName() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
LongToLongTypeConverter() - Constructor for class net.imagej.convert.NumberToNumericTypeConverters.LongToLongTypeConverter
LongTypeToLongConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.LongTypeToLongConverter
lowerBound(T) - Method in interface net.imagej.types.DataType: Sets a given variable to the lower bound of the underlying NumericType.
lowerBound(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
lowerBound(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
lowerBound(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
lowerBound(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
lowerBound(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
lowerBound(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
lowerBound(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
lowerBound(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
lowerBound(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
lowerBound(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
lowerBound(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
lowerBound(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
lowerBound(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
lowerBound(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
lowerBound(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
lowerBound(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
lowerBound(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
LUTFileDragAndDropHandler - Class in net.imagej.ui.dnd: Drag-and-drop handler for ColorTable files.
LUTFileDragAndDropHandler() - Constructor for class net.imagej.ui.dnd.LUTFileDragAndDropHandler
LUTFinder - Class in net.imagej.lut: Deprecated.
Use LUTService.findLUTs() instead.
LUTFinder() - Constructor for class net.imagej.lut.LUTFinder: Deprecated.
LUTIOPlugin - Class in net.imagej.lut.io: I/O plugin for ColorTables.
LUTIOPlugin() - Constructor for class net.imagej.lut.io.LUTIOPlugin
LUTsChangedEvent - Class in net.imagej.display.event: An event indicating a change in the composition of color tables of a view.
LUTsChangedEvent(DataView) - Constructor for class net.imagej.display.event.LUTsChangedEvent
LUTSelector - Class in net.imagej.lut: Applies a ColorTable to an ImageDisplay.
LUTSelector() - Constructor for class net.imagej.lut.LUTSelector
LUTService - Interface in net.imagej.lut: The LUTService loads ColorTables (i.e., Look-Up Tables or LUTs) from various data sources.

M

MAGENTA - Static variable in class net.imagej.display.ColorTables
main(String[]) - Static method in class net.imagej.util.MirrorWebsite
map() - Method in class net.imagej.display.SourceOptimizedCompositeXYProjector
MaskAsRandomAccessibleUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
MaskConversionUtil - Class in net.imagej.roi: Utility class for working with MaskPredicates.
MaskIntervalAsRandomAccessibleIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
MaskIntervalToRAIConverter - Class in net.imagej.roi: Converts a MaskInterval to RandomAccessibleInterval<BoolType>.
MaskIntervalToRAIConverter() - Constructor for class net.imagej.roi.MaskIntervalToRAIConverter
MaskPredicateToROITreeConverter - Class in net.imagej.convert: Converts MaskPredicates into a ROITree with containing only the given predicate.
MaskPredicateToROITreeConverter() - Constructor for class net.imagej.convert.MaskPredicateToROITreeConverter
MaskToRAConverter - Class in net.imagej.roi: Converts a Mask to RandomAccessible<BoolType>.
MaskToRAConverter() - Constructor for class net.imagej.roi.MaskToRAConverter
max(int) - Method in class net.imagej.DefaultDataset
max(long[]) - Method in class net.imagej.DefaultDataset
max(Positionable) - Method in class net.imagej.DefaultDataset
max(int) - Method in class net.imagej.display.DefaultImageDisplay
max(long[]) - Method in class net.imagej.display.DefaultImageDisplay
max(Positionable) - Method in class net.imagej.display.DefaultImageDisplay
max(int) - Method in class net.imagej.ImgPlus
max(long[]) - Method in class net.imagej.ImgPlus
max(Positionable) - Method in class net.imagej.ImgPlus
max() - Method in class net.imagej.interval.CombinedRealInterval.MinMax
max(int) - Method in class net.imagej.table.ResultsImg
max(long[]) - Method in class net.imagej.table.ResultsImg
max(Positionable) - Method in class net.imagej.table.ResultsImg
MAX_FILES_SHOWN - Static variable in interface net.imagej.display.WindowService
MediaWikiClient - Class in net.imagej.util: A minimal MediaWiki API client for interacting with the ImageJ Wiki.
MediaWikiClient() - Constructor for class net.imagej.util.MediaWikiClient
MediaWikiClient(String) - Constructor for class net.imagej.util.MediaWikiClient
MESSAGE - Static variable in class net.imagej.app.QuitProgram
min(int) - Method in class net.imagej.DefaultDataset
min(long[]) - Method in class net.imagej.DefaultDataset
min(Positionable) - Method in class net.imagej.DefaultDataset
min(int) - Method in class net.imagej.display.DefaultImageDisplay
min(long[]) - Method in class net.imagej.display.DefaultImageDisplay
min(Positionable) - Method in class net.imagej.display.DefaultImageDisplay
min(int) - Method in class net.imagej.ImgPlus
min(long[]) - Method in class net.imagej.ImgPlus
min(Positionable) - Method in class net.imagej.ImgPlus
min() - Method in class net.imagej.interval.CombinedRealInterval.MinMax
min(int) - Method in class net.imagej.table.ResultsImg
min(long[]) - Method in class net.imagej.table.ResultsImg
min(Positionable) - Method in class net.imagej.table.ResultsImg
MinMax() - Constructor for class net.imagej.interval.CombinedRealInterval.MinMax
MinMaxMethod<T extends Type<T> & Comparable<T>> - Interface in net.imagej.minmax: The MinMaxMethod is used to find the minimum and maximum values of an interval.
mirror(String) - Method in class net.imagej.util.MirrorWebsite
MirrorWebsite - Class in net.imagej.util: This program mirrors a given website.
MirrorWebsite(String, File, int, long) - Constructor for class net.imagej.util.MirrorWebsite
MouseCursorEvent - Class in net.imagej.display.event: An event indicating a change in the mouse cursor.
MouseCursorEvent(ImageCanvas) - Constructor for class net.imagej.display.event.MouseCursorEvent
move(int, int) - Method in class net.imagej.display.AbstractDataView
move(long, int) - Method in class net.imagej.display.AbstractDataView
move(Localizable) - Method in class net.imagej.display.AbstractDataView
move(int[]) - Method in class net.imagej.display.AbstractDataView
move(long[]) - Method in class net.imagej.display.AbstractDataView
move(int, int) - Method in class net.imagej.display.DefaultImageDisplay
move(long, int) - Method in class net.imagej.display.DefaultImageDisplay
move(Localizable) - Method in class net.imagej.display.DefaultImageDisplay
move(int[]) - Method in class net.imagej.display.DefaultImageDisplay
move(long[]) - Method in class net.imagej.display.DefaultImageDisplay
move(double[]) - Method in class net.imagej.overlay.AngleOverlay
move(double[]) - Method in class net.imagej.overlay.BinaryMaskOverlay
move(double[]) - Method in class net.imagej.overlay.CompositeOverlay
move(double[]) - Method in class net.imagej.overlay.EllipseOverlay
move(double[]) - Method in class net.imagej.overlay.GeneralPathOverlay
move(double[]) - Method in class net.imagej.overlay.LineOverlay
move(double[]) - Method in interface net.imagej.overlay.Overlay
move(double[]) - Method in class net.imagej.overlay.PointOverlay
move(double[]) - Method in class net.imagej.overlay.PolygonOverlay
move(double[]) - Method in class net.imagej.overlay.RectangleOverlay
move(double[]) - Method in class net.imagej.overlay.TextOverlay
move(long, int) - Method in class net.imagej.Position: Moves a given dimension of the Position by a given delta.
move(long[]) - Method in class net.imagej.Position: Moves all dimensions of the Position by given deltas.
move(int, int) - Method in class net.imagej.Position: Moves a given dimension of the Position by a given delta.
move(int[]) - Method in class net.imagej.Position: Moves all dimensions of the Position by given deltas.
move(Localizable) - Method in class net.imagej.Position: Moves all dimensions of the Position by given deltas.
moveTo(long, long) - Method in class net.imagej.DrawingTool: Moves the drawing origin of the current UV plane to the specified coordinates.
mul(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex: Set self to the result of multiplication between two BigComplex values.
mul(BigComplex) - Method in class net.imagej.types.BigComplex: Multiplies another BigComplex value with self.
mul(float) - Method in class net.imagej.types.BigComplex: Multiplies self by a scalar (float) constant.
mul(double) - Method in class net.imagej.types.BigComplex: Multiplies self by a scalar (double) constant.
mul(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
mul(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
mul(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
mul(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
mul(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
mul(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
mul(float) - Method in class net.imagej.types.PreciseFixedFloatType
mul(double) - Method in class net.imagej.types.PreciseFixedFloatType
mul(BigInteger) - Method in class net.imagej.types.PreciseFixedFloatType
mul(BigDecimal) - Method in class net.imagej.types.PreciseFixedFloatType
mul(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
mul(float) - Method in class net.imagej.types.UnboundedIntegerType
mul(double) - Method in class net.imagej.types.UnboundedIntegerType
mul(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType
mul(BigDecimal) - Method in class net.imagej.types.UnboundedIntegerType

N

NAME - Static variable in class net.imagej.app.ImageJApp
nameChanged() - Method in class net.imagej.lut.LUTSelector
negate() - Method in class net.imagej.types.PreciseFixedFloatType
net.imagej - package net.imagej
net.imagej.animation - package net.imagej.animation
net.imagej.app - package net.imagej.app
net.imagej.autoscale - package net.imagej.autoscale
net.imagej.axis - package net.imagej.axis
net.imagej.command - package net.imagej.command
net.imagej.config - package net.imagej.config
net.imagej.convert - package net.imagej.convert
net.imagej.display - package net.imagej.display
net.imagej.display.event - package net.imagej.display.event
net.imagej.display.process - package net.imagej.display.process
net.imagej.event - package net.imagej.event
net.imagej.interval - package net.imagej.interval
net.imagej.lut - package net.imagej.lut
net.imagej.lut.io - package net.imagej.lut.io
net.imagej.minmax - package net.imagej.minmax
net.imagej.options - package net.imagej.options
net.imagej.overlay - package net.imagej.overlay
net.imagej.render - package net.imagej.render
net.imagej.roi - package net.imagej.roi
net.imagej.sampler - package net.imagej.sampler
net.imagej.space - package net.imagej.space
net.imagej.table - package net.imagej.table
net.imagej.types - package net.imagej.types
net.imagej.ui - package net.imagej.ui
net.imagej.ui.dnd - package net.imagej.ui.dnd
net.imagej.ui.viewer.image - package net.imagej.ui.viewer.image
net.imagej.units - package net.imagej.units
net.imagej.util - package net.imagej.util
net.imagej.widget - package net.imagej.widget
noLineDecoration - Static variable in class net.imagej.options.OptionsOverlay
noLineStyle - Static variable in class net.imagej.options.OptionsOverlay
not(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
NumberToNumericTypeConverters - Class in net.imagej.convert: Converters that convert a Number to a NumericType.
NumberToNumericTypeConverters.ByteToByteTypeConverter - Class in net.imagej.convert
NumberToNumericTypeConverters.DoubleToDoubleTypeConverter - Class in net.imagej.convert
NumberToNumericTypeConverters.FloatToFloatTypeConverter - Class in net.imagej.convert
NumberToNumericTypeConverters.IntegerToIntTypeConverter - Class in net.imagej.convert
NumberToNumericTypeConverters.LongToLongTypeConverter - Class in net.imagej.convert
NumberToNumericTypeConverters.ShortToShortTypeConverter - Class in net.imagej.convert
numDimensions() - Method in class net.imagej.DefaultDataset
numDimensions() - Method in class net.imagej.display.AbstractDataView
numDimensions() - Method in class net.imagej.display.DefaultImageDisplay
numDimensions() - Method in class net.imagej.overlay.AbstractOverlay
numDimensions() - Method in class net.imagej.overlay.AngleOverlay
numDimensions() - Method in class net.imagej.overlay.LineOverlay
numDimensions() - Method in class net.imagej.overlay.PointOverlay
numDimensions() - Method in class net.imagej.Position: Returns the number of dimensions within the Position.
numDimensions() - Method in class net.imagej.space.AbstractAnnotatedSpace
numDimensions() - Method in class net.imagej.space.CombinedSpace
numDimensions() - Method in class net.imagej.table.ResultsImg
numElements() - Method in class net.imagej.Extents: Returns the total number of elements spanned by the parent Extents.
numeric(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
numeric(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of type NumericType.
NumericTypeToNumberConverters - Class in net.imagej.convert: Converters that convert a NumericType to a Number.
NumericTypeToNumberConverters.ByteTypeToByteConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.DoubleTypeToDoubleConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.FloatTypeToFloatConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.IntegerTypeToBigIntegerConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.IntTypeToIntegerConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.LongTypeToLongConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.ShortTypeToShortConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.Unsigned12BitTypeToLongConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.Unsigned2BitTypeToLongConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.Unsigned4BitTypeToLongConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.UnsignedByteTypeToIntegerConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.UnsignedIntTypeToLongConverter - Class in net.imagej.convert
NumericTypeToNumberConverters.UnsignedShortTypeToIntegerConverter - Class in net.imagej.convert
numVars() - Method in class net.imagej.axis.VariableAxis: Gets the number of variables with assigned values.

O

offset() - Method in class net.imagej.units.LinearCalibrator
onEvent(KyPressedEvent) - Method in class net.imagej.animation.DefaultAnimationService: Stops animation if ESC key is pressed.
onEvent(DisplayDeletedEvent) - Method in class net.imagej.animation.DefaultAnimationService: Stops animation if display has been deleted.
onEvent(DataRestructuredEvent) - Method in class net.imagej.animation.DefaultAnimationService: Stops animation of displays whose Data have been restructured.
onEvent(DatasetTypeChangedEvent) - Method in class net.imagej.display.DefaultDatasetView
onEvent(DatasetRGBChangedEvent) - Method in class net.imagej.display.DefaultDatasetView
onEvent(DatasetUpdatedEvent) - Method in class net.imagej.display.DefaultDatasetView
onEvent(DataRestructuredEvent) - Method in class net.imagej.display.DefaultImageDisplay
onEvent(DataUpdatedEvent) - Method in class net.imagej.display.DefaultImageDisplay
onEvent(DisplayDeletedEvent) - Method in class net.imagej.display.DefaultImageDisplay
onEvent(DisplayCreatedEvent) - Method in class net.imagej.display.DefaultWindowService
onEvent(DisplayActivatedEvent) - Method in class net.imagej.display.DefaultWindowService
onEvent(DisplayDeletedEvent) - Method in class net.imagej.display.DefaultWindowService
onEvent(MsPressedEvent) - Method in class net.imagej.ui.DefaultImageJUIService
onEvent(WinActivatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
onEvent(PanZoomEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
onEvent(DatasetRestructuredEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
onEvent(DelayedPositionEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
onEvent(DatasetUpdatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
onEvent(DisplayUpdatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
open(String) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(String, Object) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(String) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(String, Object) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(String) - Method in class net.imagej.lut.io.LUTIOPlugin
openBox(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritableBox with open boundary behavior.
openEllipsoid(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates an WritableEllipsoid with open boundary behavior.
openPolygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with open boundary behavior.
openPolygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with open boundary behavior.
openSphere(double[], double) - Method in interface net.imagej.roi.ROIService: Creates a WritableSphere with open boundary behavior.
openSuperEllipsoid(double[], double[], double) - Method in interface net.imagej.roi.ROIService: Creates a WritableSuperEllipsoid with open boundary behavior.
openWebPage() - Method in class net.imagej.options.OptionsCompatibility
OptionsAppearance - Class in net.imagej.options: Runs the Edit::Options::Appearance dialog.
OptionsAppearance() - Constructor for class net.imagej.options.OptionsAppearance
OptionsArrowTool - Class in net.imagej.options: Runs the Edit::Options::Arrow Tool dialog.
OptionsArrowTool() - Constructor for class net.imagej.options.OptionsArrowTool
OptionsChannels - Class in net.imagej.options: Runs the Edit::Options::Channels dialog.
OptionsChannels() - Constructor for class net.imagej.options.OptionsChannels
OptionsCompatibility - Class in net.imagej.options: Runs the Edit::Options::Compatibility dialog.
OptionsCompatibility() - Constructor for class net.imagej.options.OptionsCompatibility
OptionsCompiler - Class in net.imagej.options: Runs the Edit::Options::Compiler dialog.
OptionsCompiler() - Constructor for class net.imagej.options.OptionsCompiler
OptionsConversions - Class in net.imagej.options: Runs the Edit::Options::Conversions dialog.
OptionsConversions() - Constructor for class net.imagej.options.OptionsConversions
OptionsDicom - Class in net.imagej.options: Runs the Edit::Options::DICOM dialog.
OptionsDicom() - Constructor for class net.imagej.options.OptionsDicom
OptionsFont - Class in net.imagej.options: Runs the Edit::Options::Fonts dialog.
OptionsFont() - Constructor for class net.imagej.options.OptionsFont
OptionsInputOutput - Class in net.imagej.options: Runs the Edit::Options::Input/Output dialog.
OptionsInputOutput() - Constructor for class net.imagej.options.OptionsInputOutput
OptionsLineWidth - Class in net.imagej.options: Runs the Edit::Options::Line Width dialog.
OptionsLineWidth() - Constructor for class net.imagej.options.OptionsLineWidth
OptionsMemoryAndThreads - Class in net.imagej.options: Runs the Edit::Options::Memory & Threads dialog.
OptionsMemoryAndThreads() - Constructor for class net.imagej.options.OptionsMemoryAndThreads
OptionsMisc - Class in net.imagej.options: Runs the Edit::Options::Misc dialog.
OptionsMisc() - Constructor for class net.imagej.options.OptionsMisc
OptionsOverlay - Class in net.imagej.options: Runs the Edit::Options::Overlay...
OptionsOverlay() - Constructor for class net.imagej.options.OptionsOverlay
OptionsPointTool - Class in net.imagej.options: Runs the Edit::Options::Point Tool dialog.
OptionsPointTool() - Constructor for class net.imagej.options.OptionsPointTool
OptionsProfilePlot - Class in net.imagej.options: Runs the Edit::Options::Profile Plot Options dialog.
OptionsProfilePlot() - Constructor for class net.imagej.options.OptionsProfilePlot
OptionsProxy - Class in net.imagej.options: Runs the Edit::Options::Proxy Settings dialog.
OptionsProxy() - Constructor for class net.imagej.options.OptionsProxy
OptionsReset - Class in net.imagej.options: Runs the Edit::Options::Reset dialog.
OptionsReset() - Constructor for class net.imagej.options.OptionsReset
OptionsRoundedRectangleTool - Class in net.imagej.options: Runs the Edit::Options::Rounded Rectangle Tool dialog.
OptionsRoundedRectangleTool() - Constructor for class net.imagej.options.OptionsRoundedRectangleTool
OptionsWandTool - Class in net.imagej.options: Runs the Edit::Options::Wand Tool dialog.
OptionsWandTool() - Constructor for class net.imagej.options.OptionsWandTool
or(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
origin() - Method in class net.imagej.axis.DefaultLinearAxis
origin() - Method in interface net.imagej.axis.LinearAxis
Overlay - Interface in net.imagej.overlay: An overlay is a vector object, typically displayed with Datasets.
Overlay.ArrowStyle - Enum in net.imagej.overlay: Arrow decorations for the start and end.
Overlay.LineStyle - Enum in net.imagej.overlay: The style used to render the bounding line of the overlay.
OverlayCreatedEvent - Class in net.imagej.event: An event indicating a new Overlay has been created.
OverlayCreatedEvent(Overlay) - Constructor for class net.imagej.event.OverlayCreatedEvent
OverlayDeletedEvent - Class in net.imagej.event: An event indicating an Overlay has been deleted.
OverlayDeletedEvent(Overlay) - Constructor for class net.imagej.event.OverlayDeletedEvent
OverlayInfo - Class in net.imagej.display: This class defines what information is stored in an OverlayInfoList.
OverlayInfo(Overlay) - Constructor for class net.imagej.display.OverlayInfo
OverlayInfo(Overlay, boolean) - Constructor for class net.imagej.display.OverlayInfo
OverlayInfoList - Class in net.imagej.display: Stores data that is used by various OverlayManager implementations.
OverlayInfoList() - Constructor for class net.imagej.display.OverlayInfoList
OverlayRestructuredEvent - Class in net.imagej.event: An event indicating an Overlay's dimensional extents may have changed.
OverlayRestructuredEvent(Overlay) - Constructor for class net.imagej.event.OverlayRestructuredEvent
OverlayService - Interface in net.imagej.display: Interface for service that works with Overlays.
OverlaySettings - Class in net.imagej.overlay: Utility class that gives access to default overlay settings such as fill, transparency, arrow styles, etc.
OverlaySettings() - Constructor for class net.imagej.overlay.OverlaySettings
OverlayUpdatedEvent - Class in net.imagej.event: An event indicating an Overlay's data has been updated.
OverlayUpdatedEvent(Overlay) - Constructor for class net.imagej.event.OverlayUpdatedEvent
OverlayView - Interface in net.imagej.display: A linkage between an Overlay and a Display.

P

pan(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
pan(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
pan(RealCoords) - Method in interface net.imagej.display.Pannable: Adjusts the pan by the given (X, Y) amount.
pan(IntCoords) - Method in interface net.imagej.display.Pannable: Adjusts the pan by the given (X, Y) amount in panel space.
panelToDataCoords(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
panelToDataCoords(IntCoords) - Method in interface net.imagej.display.ImageCanvas: Converts the given panel coordinates into data coordinates.
Pannable - Interface in net.imagej.display: Defines methods needed to adjust the pan position of a viewport, such as an ImageCanvas.
panReset() - Method in class net.imagej.display.DefaultImageCanvas
panReset() - Method in interface net.imagej.display.Pannable: Resets the pan origin to the center of the display.
PanZoomEvent - Class in net.imagej.display.event: An event indicating a pan and/or zoom change has happened to an ImageCanvas.
PanZoomEvent(ImageCanvas) - Constructor for class net.imagej.display.event.PanZoomEvent
parent() - Method in interface net.imagej.roi.ROITree
particleAnalyzerFill(long, long, long[], double, double, DrawingTool, RealRect) - Method in class net.imagej.FloodFiller: In IJ1 this method is used by the particle analyzer to remove interior holes from particle masks.
particularEquation() - Method in interface net.imagej.axis.CalibratedAxis: Gets the particular equation representing values along this axis; for instance: y = (14)*x + (4).
particularEquation() - Method in class net.imagej.axis.EnumeratedAxis
particularEquation() - Method in class net.imagej.axis.VariableAxis
PI() - Method in class net.imagej.types.BigComplex: Fills self with the representation of pi for the given type.
PlanarCommand - Interface in net.imagej.command: Interface marking commands that can be toggled to run on the current plane, instead of a complete image.
pointMask(double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritablePointMask at the given location.
pointMask(RealLocalizable) - Method in interface net.imagej.roi.ROIService: Creates a WritablePointMask at the given location.
PointOverlay - Class in net.imagej.overlay: Represents a user specified collection of points
PointOverlay() - Constructor for class net.imagej.overlay.PointOverlay
PointOverlay(Context) - Constructor for class net.imagej.overlay.PointOverlay
PointOverlay(Context, List<double[]>) - Constructor for class net.imagej.overlay.PointOverlay
PointOverlay(Context, double[]) - Constructor for class net.imagej.overlay.PointOverlay
polygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with unspecified boundary behavior.
polygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolygon2D with unspecified boundary behavior.
PolygonOverlay - Class in net.imagej.overlay: TODO
PolygonOverlay() - Constructor for class net.imagej.overlay.PolygonOverlay
PolygonOverlay(Context) - Constructor for class net.imagej.overlay.PolygonOverlay
polyline(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService: Creates a WritablePolyline containing the given vertices, in the given order.
PolynomialAxis - Class in net.imagej.axis: PolynomialAxis is a CalibratedAxis that scale nonlinearly as a polynomial of degree >= 2.
PolynomialAxis() - Constructor for class net.imagej.axis.PolynomialAxis
PolynomialAxis(AxisType, String, double...) - Constructor for class net.imagej.axis.PolynomialAxis
Position - Class in net.imagej: A Position is used to move within a given reference Extents object.
Position(Extents) - Constructor for class net.imagej.Position: Constructor - takes an Extents object that represents the parent space to iterate within.
Position(Position) - Constructor for class net.imagej.Position: Constructs a position that is a copy of the given position.
PositionableByAxis - Interface in net.imagej: An element that is Positionable and Localizable in N-dimensional discrete space, by both dimension number and axis type.
pow(BigComplex) - Method in class net.imagej.types.BigComplex
pow(double) - Method in class net.imagej.types.BigComplex
pow(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
pow(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
pow(int) - Method in class net.imagej.types.PreciseFixedFloatType
pow(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
pow(double) - Method in class net.imagej.types.PreciseFixedFloatType
pow(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
pow(double) - Method in class net.imagej.types.UnboundedIntegerType
PowerAxis - Class in net.imagej.axis: PowerAxis is a CalibratedAxis that scales raw values by the equation y = a + b*x^c.
PowerAxis(double) - Constructor for class net.imagej.axis.PowerAxis
PowerAxis(AxisType, double) - Constructor for class net.imagej.axis.PowerAxis
PowerAxis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.PowerAxis
PreciseFixedComplexFloatType - Class in net.imagej.types: A fixed point complex float type.
PreciseFixedComplexFloatType() - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
PreciseFixedComplexFloatType(double, double) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
PreciseFixedComplexFloatType(BigDecimal, BigDecimal) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
PreciseFixedComplexFloatType(String, String) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
PreciseFixedComplexFloatType(PreciseFixedComplexFloatType) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
PreciseFixedFloatType - Class in net.imagej.types: A fixed point floating numeric type.
PreciseFixedFloatType() - Constructor for class net.imagej.types.PreciseFixedFloatType
PreciseFixedFloatType(long) - Constructor for class net.imagej.types.PreciseFixedFloatType
PreciseFixedFloatType(double) - Constructor for class net.imagej.types.PreciseFixedFloatType
PreciseFixedFloatType(BigInteger) - Constructor for class net.imagej.types.PreciseFixedFloatType
PreciseFixedFloatType(BigDecimal) - Constructor for class net.imagej.types.PreciseFixedFloatType
PreciseFixedFloatType(String) - Constructor for class net.imagej.types.PreciseFixedFloatType
PreciseFixedFloatType(PreciseFixedFloatType) - Constructor for class net.imagej.types.PreciseFixedFloatType
Preferences - Class in net.imagej.app: Displays the preferences dialog.
Preferences() - Constructor for class net.imagej.app.Preferences
prefs() - Method in class net.imagej.app.ImageJApp
PRIORITY - Static variable in class net.imagej.app.ImageJApp
process(Module) - Method in class net.imagej.display.process.ActiveImagePreprocessor
process(Module) - Method in class net.imagej.display.process.SingleInputPreprocessor
process() - Method in class net.imagej.minmax.DefaultMinMaxMethod
process() - Method in interface net.imagej.minmax.MinMaxMethod: Begins searching the target interval for minimum and maximum values.
publish(SciJavaEvent) - Method in class net.imagej.AbstractData
publish(SciJavaEvent) - Method in class net.imagej.display.AbstractDataView

Q

query(String...) - Method in class net.imagej.util.MediaWikiClient
quit() - Method in class net.imagej.app.ImageJApp
QuitProgram - Class in net.imagej.app: Quits ImageJ.
QuitProgram() - Constructor for class net.imagej.app.QuitProgram

R

RAIToDatasetConverter() - Constructor for class net.imagej.convert.ImageConverters.RAIToDatasetConverter
RAIToDatasetViewConverter() - Constructor for class net.imagej.convert.ImageConverters.RAIToDatasetViewConverter
RAIToImageDisplayConverter() - Constructor for class net.imagej.convert.ImageConverters.RAIToImageDisplayConverter
RAIToImgConverter() - Constructor for class net.imagej.convert.ImageConverters.RAIToImgConverter
RAIToImgPlusConverter() - Constructor for class net.imagej.convert.ImageConverters.RAIToImgPlusConverter
RAIToMaskIntervalConverter - Class in net.imagej.roi: Converts a RandomAccessibleInterval<BoolType> to MaskInterval.
RAIToMaskIntervalConverter() - Constructor for class net.imagej.roi.RAIToMaskIntervalConverter
randomAccess() - Method in class net.imagej.DefaultDataset
randomAccess(Interval) - Method in class net.imagej.DefaultDataset
randomAccess() - Method in class net.imagej.ImgPlus
randomAccess(Interval) - Method in class net.imagej.ImgPlus
randomAccess() - Method in class net.imagej.table.ResultsImg
randomAccess(Interval) - Method in class net.imagej.table.ResultsImg
RandomAccessibleAsMaskUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
RandomAccessibleIntervalAsMaskIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
RandomAccessibleIntervalToImgLabelingConverter<T extends IntegerType<T>> - Class in net.imagej.convert: This Converter converts an Img to an ImgLabeling.
RandomAccessibleIntervalToImgLabelingConverter() - Constructor for class net.imagej.convert.RandomAccessibleIntervalToImgLabelingConverter
randomAccessibleIntervalType() - Static method in class net.imagej.roi.MaskConversionUtil: Gets parameterized Type for RandomAccessibleInterval<BoolType>.
randomAccessibleType() - Static method in class net.imagej.roi.MaskConversionUtil: Gets parameterized Type for RandomAccessible<BoolType>.
RAToMaskConverter - Class in net.imagej.roi: Converts a RandomAccessible<BoolType> to Mask.
RAToMaskConverter() - Constructor for class net.imagej.roi.RAToMaskConverter
rawValue(double) - Method in interface net.imagej.axis.CalibratedAxis: Returns a raw value given a calibrated position along the axis.
rawValue(double) - Method in class net.imagej.axis.ChapmanRichardsAxis
rawValue(double) - Method in class net.imagej.axis.DefaultLinearAxis
rawValue(double) - Method in class net.imagej.axis.EnumeratedAxis
rawValue(double) - Method in class net.imagej.axis.ExponentialAxis
rawValue(double) - Method in class net.imagej.axis.ExponentialRecoveryAxis
rawValue(double) - Method in class net.imagej.axis.GammaVariateAxis
rawValue(double) - Method in class net.imagej.axis.GaussianAxis
rawValue(double) - Method in class net.imagej.axis.IdentityAxis
rawValue(double) - Method in class net.imagej.axis.InverseRodbardAxis
rawValue(double) - Method in class net.imagej.axis.LogLinearAxis
rawValue(double) - Method in class net.imagej.axis.PolynomialAxis
rawValue(double) - Method in class net.imagej.axis.PowerAxis
rawValue(double) - Method in class net.imagej.axis.RodbardAxis
readExternal(ObjectInput) - Method in class net.imagej.AbstractData
readExternal(ObjectInput) - Method in class net.imagej.overlay.AbstractOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.AngleOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.BinaryMaskOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.CompositeOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.EllipseOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.GeneralPathOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.LineOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.PointOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.PolygonOverlay
readExternal(ObjectInput) - Method in class net.imagej.overlay.RectangleOverlay
real(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
real(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of type RealType.
RealMaskAsRealRandomAccessibleUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
RealMaskRealIntervalToRRARIConverter - Class in net.imagej.roi: Converts a RealMaskRealInterval to RealRandomAccessibleRealInterval<BoolType>.
RealMaskRealIntervalToRRARIConverter() - Constructor for class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
RealMaskToRRAConverter - Class in net.imagej.roi: Converts a RealMask to RealRandomAccessible<BoolType>.
RealMaskToRRAConverter() - Constructor for class net.imagej.roi.RealMaskToRRAConverter
realMax(int) - Method in class net.imagej.DefaultDataset
realMax(double[]) - Method in class net.imagej.DefaultDataset
realMax(RealPositionable) - Method in class net.imagej.DefaultDataset
realMax(int) - Method in class net.imagej.display.DefaultImageDisplay
realMax(double[]) - Method in class net.imagej.display.DefaultImageDisplay
realMax(RealPositionable) - Method in class net.imagej.display.DefaultImageDisplay
realMax(int) - Method in class net.imagej.ImgPlus
realMax(double[]) - Method in class net.imagej.ImgPlus
realMax(RealPositionable) - Method in class net.imagej.ImgPlus
realMax(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
realMax(double[]) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
realMax(RealPositionable) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
realMax(int) - Method in class net.imagej.interval.CombinedRealInterval
realMax(double[]) - Method in class net.imagej.interval.CombinedRealInterval
realMax(RealPositionable) - Method in class net.imagej.interval.CombinedRealInterval
realMax(int) - Method in class net.imagej.overlay.AbstractOverlay
realMax(double[]) - Method in class net.imagej.overlay.AbstractOverlay
realMax(RealPositionable) - Method in class net.imagej.overlay.AbstractOverlay
realMax(int) - Method in class net.imagej.table.ResultsImg
realMax(double[]) - Method in class net.imagej.table.ResultsImg
realMax(RealPositionable) - Method in class net.imagej.table.ResultsImg
realMin(int) - Method in class net.imagej.DefaultDataset
realMin(double[]) - Method in class net.imagej.DefaultDataset
realMin(RealPositionable) - Method in class net.imagej.DefaultDataset
realMin(int) - Method in class net.imagej.display.DefaultImageDisplay
realMin(double[]) - Method in class net.imagej.display.DefaultImageDisplay
realMin(RealPositionable) - Method in class net.imagej.display.DefaultImageDisplay
realMin(int) - Method in class net.imagej.ImgPlus
realMin(double[]) - Method in class net.imagej.ImgPlus
realMin(RealPositionable) - Method in class net.imagej.ImgPlus
realMin(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
realMin(double[]) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
realMin(RealPositionable) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
realMin(int) - Method in class net.imagej.interval.CombinedRealInterval
realMin(double[]) - Method in class net.imagej.interval.CombinedRealInterval
realMin(RealPositionable) - Method in class net.imagej.interval.CombinedRealInterval
realMin(int) - Method in class net.imagej.overlay.AbstractOverlay
realMin(double[]) - Method in class net.imagej.overlay.AbstractOverlay
realMin(RealPositionable) - Method in class net.imagej.overlay.AbstractOverlay
realMin(int) - Method in class net.imagej.table.ResultsImg
realMin(double[]) - Method in class net.imagej.table.ResultsImg
realMin(RealPositionable) - Method in class net.imagej.table.ResultsImg
realPointCollection(HashMap<TDoubleArrayList, L>) - Method in interface net.imagej.roi.ROIService: Creates a mutable WritableRealPointCollection containing the given points.
realPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService: Creates a WritableRealPointCollection containing the given points.
realPointSampleListRealPointCollection(RealPointSampleList<L>) - Method in interface net.imagej.roi.ROIService: Creates a WritableRealPointCollection containing the given points.
realPointSampleListRealPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService: Creates a WritableRealPointCollection containing the given points.
RealRandomAccessibleAsRealMaskUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
realRandomAccessibleRealIntervalType() - Static method in class net.imagej.roi.MaskConversionUtil: Gets parameterized Type for RealRandomAccessibleRealInterval<BoolType>.
realRandomAccessibleType() - Static method in class net.imagej.roi.MaskConversionUtil: Gets parameterized Type for RealRandomAccessible<BoolType>.
rebuild() - Method in interface net.imagej.Data: Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.
rebuild() - Method in interface net.imagej.Dataset: Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.
rebuild() - Method in class net.imagej.DefaultDataset
rebuild() - Method in interface net.imagej.display.DataView: Recreates the view.
rebuild() - Method in class net.imagej.display.DefaultDatasetView
rebuild() - Method in class net.imagej.display.DefaultImageDisplay
rebuild() - Method in class net.imagej.display.DefaultOverlayView
rebuild() - Method in class net.imagej.overlay.AbstractOverlay
rebuild() - Method in interface net.imagej.overlay.Overlay: Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.
RectangleOverlay - Class in net.imagej.overlay: An axis-aligned rectangle, backed by a RectangleRegionOfInterest.
RectangleOverlay() - Constructor for class net.imagej.overlay.RectangleOverlay
RectangleOverlay(Context) - Constructor for class net.imagej.overlay.RectangleOverlay
RED - Static variable in class net.imagej.display.ColorTables
REDGREEN - Static variable in class net.imagej.display.ColorTables
register() - Method in class net.imagej.AbstractData: Informs interested parties that the data object has become relevant and should be registered.
register() - Method in class net.imagej.DefaultDataset
register() - Method in class net.imagej.overlay.AbstractOverlay
remove(String) - Method in class net.imagej.display.DefaultWindowService
remove(String) - Method in interface net.imagej.display.WindowService: Removes a path from the list of window files.
remove(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
removeOverlay(ImageDisplay, Overlay) - Method in class net.imagej.display.DefaultOverlayService
removeOverlay(Overlay) - Method in class net.imagej.display.DefaultOverlayService
removeOverlay(ImageDisplay, Overlay) - Method in interface net.imagej.display.OverlayService: Removes an Overlay from the given ImageDisplay.
removeOverlay(Overlay) - Method in interface net.imagej.display.OverlayService: Removes an Overlay from all ImageDisplays.
RenderingService - Interface in net.imagej.render: Interface for service that performs text rendering.
renderText(String) - Method in class net.imagej.render.DummyTextRenderer
renderText(String) - Method in interface net.imagej.render.TextRenderer
replaceOverlay(int, Overlay) - Method in class net.imagej.display.OverlayInfoList
replaceOverlayInfo(int, OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
request(String[], String, String...) - Method in class net.imagej.util.MediaWikiClient
reset() - Method in class net.imagej.Position: Resets the Position for forward or backward traversal.
resetColorTables(boolean) - Method in interface net.imagej.display.DatasetView
resetColorTables(boolean) - Method in class net.imagej.display.DefaultDatasetView
ResultsImg - Class in net.imagej.table: Expresses a ResultsTable as an Img.
ResultsImg(ResultsTable) - Constructor for class net.imagej.table.ResultsImg
ResultsTable - Interface in net.imagej.table: A table of double-precision floating point values.
revert(Dataset) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#revert instead.
revert(Dataset) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#revert instead.
RGB332 - Static variable in class net.imagej.display.ColorTables
rgbChange() - Method in interface net.imagej.Dataset: TODO
rgbChange() - Method in class net.imagej.DefaultDataset
RodbardAxis - Class in net.imagej.axis: RodbardAxis is a CalibratedAxis that scales raw values by the equation y = a + (b-a) / (1 + (x/c)^d).
RodbardAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.RodbardAxis
ROI_PROPERTY - Static variable in interface net.imagej.roi.ROIService
ROIService - Interface in net.imagej.roi: Service for working with Regions of Interest (ROI).
ROITree - Interface in net.imagej.roi: A tree of ROIs.
ROITreeToMaskPredicateConverter - Class in net.imagej.convert: Converter from ROITree to MaskPredicate.
ROITreeToMaskPredicateConverter() - Constructor for class net.imagej.convert.ROITreeToMaskPredicateConverter
RRARIToRealMaskRealIntervalConverter - Class in net.imagej.roi: Converts a RealRandomAccessibleRealInterval<BoolType> to RealMaskRealInterval.
RRARIToRealMaskRealIntervalConverter() - Constructor for class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
RRAToRealMaskConverter - Class in net.imagej.roi: Converts a RealRandomAccessible<BoolType> to RealMask.
RRAToRealMaskConverter() - Constructor for class net.imagej.roi.RRAToRealMaskConverter
run() - Method in class net.imagej.animation.Animation
run() - Method in class net.imagej.app.AboutImageJ
run() - Method in class net.imagej.app.Preferences
run() - Method in class net.imagej.app.QuitProgram
run() - Method in class net.imagej.command.AbstractPlanarCommand
run(RandomAccessibleInterval<?>) - Method in interface net.imagej.command.PlanarCommand: As Runnable.run(), but operating only on the specified plane.
run() - Method in class net.imagej.display.SelectWindow
run() - Method in class net.imagej.lut.ApplyLookupTable
run() - Method in class net.imagej.lut.LUTSelector
run() - Method in class net.imagej.options.OptionsOverlay
run() - Method in class net.imagej.options.OptionsReset
run() - Method in class net.imagej.util.MirrorWebsite

S

sampleAllPlanes(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition: A convenience method for defining a SamplingDefinition that returns a complete copy of an ImageDisplay.
sampleCompositeUVPlane(ImageDisplay, AxisType, AxisType) - Static method in class net.imagej.sampler.SamplingDefinition: A convenience method for defining a SamplingDefinition that returns a composite (multichannel) UV plane of an ImageDisplay.
sampleCompositeXYPlane(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition: A convenience method for defining a SamplingDefinition that returns a composite (multichannel) XY plane of an ImageDisplay.
SamplerService - Interface in net.imagej.sampler: Interface for sampler operations which manipulate ImageDisplay data.
sampleUVPlane(ImageDisplay, AxisType, AxisType) - Static method in class net.imagej.sampler.SamplingDefinition: A convenience method for defining a SamplingDefinition that returns a single UV plane of an ImageDisplay.
sampleXYPlane(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition: A convenience method for defining a SamplingDefinition that returns a single XY plane of an ImageDisplay.
SamplingDefinition - Class in net.imagej.sampler: SamplingDefinitions define regions of space and are used by the SamplerService to pull data out of existing ImageDisplays.
save(Dataset, String) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save(Dataset, String, Object) - Method in interface net.imagej.DatasetService: Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save(Dataset, String) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save(Dataset, String, Object) - Method in class net.imagej.DefaultDatasetService: Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save() - Method in class net.imagej.options.OptionsChannels
save() - Method in class net.imagej.options.OptionsMemoryAndThreads: Saves the instance variable fields to persistent storage.
scale() - Method in class net.imagej.axis.DefaultLinearAxis
scale() - Method in interface net.imagej.axis.LinearAxis
scale() - Method in class net.imagej.units.LinearCalibrator
ScreenCaptureService - Interface in net.imagej.display: An interface for supporting the capturing of screen data to a Dataset.
selectedIndices() - Method in class net.imagej.display.OverlayInfoList
selectedOverlays() - Method in class net.imagej.display.OverlayInfoList
SelectWindow - Class in net.imagej.display: Activates the chosen display.
SelectWindow() - Constructor for class net.imagej.display.SelectWindow
set(String, Double) - Method in class net.imagej.axis.VariableAxis: Sets the specified value to a variable of the given name.
set(BigComplex) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to match those of another.
set(long, long) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given long values.
set(double, double) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given double values.
set(BigInteger, BigInteger) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given BigInteger values.
set(BigDecimal, BigDecimal) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given BigDecimal values.
set(String, String) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given String values.
set(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
set(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
set(double) - Method in class net.imagej.types.PreciseFixedFloatType
set(long) - Method in class net.imagej.types.PreciseFixedFloatType
set(BigInteger) - Method in class net.imagej.types.PreciseFixedFloatType
set(BigDecimal) - Method in class net.imagej.types.PreciseFixedFloatType
set(long) - Method in class net.imagej.types.UnboundedIntegerType
set(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType
set(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
setA(double) - Method in class net.imagej.axis.Variable1Axis
setActiveAxis(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
setActiveAxis(AxisType) - Method in interface net.imagej.display.ImageDisplay: Sets the axis currently designated as active.
setAddToRoiMgr(boolean) - Method in class net.imagej.options.OptionsPointTool
setAlpha(int) - Method in class net.imagej.options.OptionsOverlay
setAlpha(int) - Method in class net.imagej.overlay.AbstractOverlay
setAlpha(int) - Method in interface net.imagej.overlay.Overlay
setAlpha(int) - Method in class net.imagej.overlay.OverlaySettings
setAntialiasedToolIcons(boolean) - Method in class net.imagej.options.OptionsAppearance
setAntialiasing(boolean) - Method in class net.imagej.render.DummyTextRenderer
setAntialiasing(boolean) - Method in interface net.imagej.render.TextRenderer
setArrowColor(ColorRGB) - Method in class net.imagej.options.OptionsArrowTool
setArrowDoubleHeaded(boolean) - Method in class net.imagej.options.OptionsArrowTool
setArrowOutline(boolean) - Method in class net.imagej.options.OptionsArrowTool
setArrowSize(int) - Method in class net.imagej.options.OptionsArrowTool
setArrowStyle(String) - Method in class net.imagej.options.OptionsArrowTool
setArrowWidth(int) - Method in class net.imagej.options.OptionsArrowTool
setAutoClose(boolean) - Method in class net.imagej.options.OptionsProfilePlot
setAutoMeasure(boolean) - Method in class net.imagej.options.OptionsPointTool
setAutoNextSlice(boolean) - Method in class net.imagej.options.OptionsPointTool
setAxes(CalibratedAxis[]) - Method in interface net.imagej.Dataset
setAxes(CalibratedAxis[]) - Method in class net.imagej.DefaultDataset
setAxis(AxisType) - Method in class net.imagej.animation.Animation
setAxis(CalibratedAxis, int) - Method in class net.imagej.DefaultDataset
setAxis(CalibratedAxis, int) - Method in class net.imagej.display.DefaultImageDisplay
setAxis(A, int) - Method in class net.imagej.space.AbstractAnnotatedSpace
setAxis(A, int) - Method in interface net.imagej.space.AnnotatedSpace: Sets the dimensional axis associated with the given dimension.
setAxis(A, int) - Method in class net.imagej.space.CombinedSpace
setB(double) - Method in class net.imagej.axis.Variable2Axis
setBackAndForth(boolean) - Method in class net.imagej.animation.Animation
setBgValues(ChannelCollection) - Method in class net.imagej.options.OptionsChannels
setBigInteger(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType
setBlackCanvas(boolean) - Method in class net.imagej.options.OptionsAppearance
setC(double) - Method in class net.imagej.axis.Variable3Axis
setCenter(double[]) - Method in class net.imagej.overlay.AngleOverlay
setCenter(double, int) - Method in class net.imagej.overlay.AngleOverlay
setChannelMaximum(int, double) - Method in class net.imagej.DefaultDataset
setChannelMaximum(int, double) - Method in interface net.imagej.ImageMetadata: Sets the maximum actual pixel value for the given channel.
setChannelMaximum(int, double) - Method in class net.imagej.ImgPlus
setChannelMinimum(int, double) - Method in class net.imagej.DefaultDataset
setChannelMinimum(int, double) - Method in interface net.imagej.ImageMetadata: Sets the minimum actual pixel value for the given channel.
setChannelMinimum(int, double) - Method in class net.imagej.ImgPlus
setChannelRange(int, double, double) - Method in interface net.imagej.display.DatasetView: Sets the minimum and maximum values of the display range, for the given channel.
setChannelRange(int, double, double) - Method in class net.imagej.display.DefaultDatasetView
setChannelRanges(double, double) - Method in interface net.imagej.display.DatasetView: Sets the minimum and maximum values of the display range, globally for all channels.
setChannelRanges(double, double) - Method in class net.imagej.display.DefaultDatasetView
setChannels(ChannelCollection) - Method in class net.imagej.DrawingTool
setClearAll(boolean) - Method in class net.imagej.app.Preferences
setCoeff(int, double) - Method in class net.imagej.axis.PolynomialAxis: Sets the ith coefficient of the polynomial.
setColorMode(ColorMode) - Method in interface net.imagej.display.DatasetView
setColorMode(ColorMode) - Method in class net.imagej.display.DefaultDatasetView
setColorTable(ColorTable, int) - Method in class net.imagej.DefaultDataset
setColorTable(ColorTable, int) - Method in interface net.imagej.display.DatasetView
setColorTable(ColorTable, int) - Method in class net.imagej.display.DefaultDatasetView
setColorTable(ColorTable, int) - Method in interface net.imagej.ImageMetadata: Sets the color table at the given position.
setColorTable(ColorTable, int) - Method in class net.imagej.ImgPlus
setComplexNumber(float, float) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given float values.
setComplexNumber(double, double) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given double values.
setComplexNumber(BigDecimal, BigDecimal) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given BigDecimal values.
setComplexNumber(String, String) - Method in class net.imagej.types.BigComplex: Sets the real and imaginary components of this BigComplex to given String values.
setComplexNumber(float, float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setComplexNumber(double, double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setComplexNumber(float, float) - Method in class net.imagej.types.PreciseFixedFloatType
setComplexNumber(double, double) - Method in class net.imagej.types.PreciseFixedFloatType
setComplexNumber(float, float) - Method in class net.imagej.types.UnboundedIntegerType
setComplexNumber(double, double) - Method in class net.imagej.types.UnboundedIntegerType
setComposite(boolean) - Method in interface net.imagej.display.DatasetView
setComposite(boolean) - Method in class net.imagej.display.DefaultDatasetView
setCompositeChannelCount(int) - Method in class net.imagej.DefaultDataset
setCompositeChannelCount(int) - Method in interface net.imagej.ImageMetadata: Sets the number of channels intended to be displayed together.
setCompositeChannelCount(int) - Method in class net.imagej.ImgPlus
setContext(Context) - Method in class net.imagej.AbstractData
setCopyColumnHeaders(boolean) - Method in class net.imagej.options.OptionsInputOutput
setCopyRowNumbers(boolean) - Method in class net.imagej.options.OptionsInputOutput
setCornerDiameter(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool
setCursor(MouseCursor) - Method in class net.imagej.display.DefaultImageCanvas
setCursor(MouseCursor) - Method in interface net.imagej.display.ImageCanvas: Sets the mouse to the given MouseCursor type.
setD(double) - Method in class net.imagej.axis.Variable4Axis
setDataMinMax(double, double) - Method in class net.imagej.widget.HistogramBundle: Sets the min/max values of the actual range.
setDebugMode(boolean) - Method in class net.imagej.options.OptionsMisc
setDirty(boolean) - Method in interface net.imagej.Dataset: TODO
setDirty(boolean) - Method in class net.imagej.DefaultDataset
setDisplayFractionalScales(boolean) - Method in class net.imagej.options.OptionsAppearance
setDivByZeroVal(String) - Method in class net.imagej.options.OptionsMisc
setDouble(T, double) - Method in interface net.imagej.types.DataType: Sets a given value to a given double.
setDouble(ComplexDoubleType, double) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
setDouble(Unsigned12BitType, double) - Method in class net.imagej.types.DataType12BitUnsignedInteger
setDouble(ShortType, double) - Method in class net.imagej.types.DataType16BitSignedInteger
setDouble(UnsignedShortType, double) - Method in class net.imagej.types.DataType16BitUnsignedInteger
setDouble(BitType, double) - Method in class net.imagej.types.DataType1BitUnsignedInteger
setDouble(FloatType, double) - Method in class net.imagej.types.DataType32BitSignedFloat
setDouble(IntType, double) - Method in class net.imagej.types.DataType32BitSignedInteger
setDouble(UnsignedIntType, double) - Method in class net.imagej.types.DataType32BitUnsignedInteger
setDouble(ComplexFloatType, double) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
setDouble(DoubleType, double) - Method in class net.imagej.types.DataType64BitSignedFloat
setDouble(LongType, double) - Method in class net.imagej.types.DataType64BitSignedInteger
setDouble(ByteType, double) - Method in class net.imagej.types.DataType8BitSignedInteger
setDouble(UnsignedByteType, double) - Method in class net.imagej.types.DataType8BitUnsignedInteger
setDouble(NativeBoolType, double) - Method in class net.imagej.types.DataTypeBoolean
setDouble(BigComplex, double) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
setDouble(PreciseFixedFloatType, double) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
setDouble(UnboundedIntegerType, double) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
setDrawGridLines(boolean) - Method in class net.imagej.options.OptionsProfilePlot
setEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.options.OptionsOverlay
setEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.OverlaySettings
setExitWhenQuitting(boolean) - Method in class net.imagej.options.OptionsMisc
setExtent(double, int) - Method in class net.imagej.overlay.RectangleOverlay
setFgValues(ChannelCollection) - Method in class net.imagej.options.OptionsChannels
setFillColor(ColorRGB) - Method in class net.imagej.options.OptionsOverlay
setFillColor(ColorRGB) - Method in class net.imagej.options.OptionsRoundedRectangleTool
setFillColor(ColorRGB) - Method in class net.imagej.overlay.AbstractOverlay
setFillColor(ColorRGB) - Method in interface net.imagej.overlay.Overlay
setFillColor(ColorRGB) - Method in class net.imagej.overlay.OverlaySettings
setFillOpacity(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool
setFirst(long) - Method in class net.imagej.animation.Animation
setFont(String) - Method in class net.imagej.options.OptionsFont
setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.DrawingTool: Sets the family name of the drawing font.
setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.render.DummyTextRenderer
setFontFamily(TextRenderer.FontFamily) - Method in interface net.imagej.render.TextRenderer
setFontSize(int) - Method in class net.imagej.DrawingTool: Sets the size of the drawing font.
setFontSize(int) - Method in class net.imagej.options.OptionsFont
setFontSize(int) - Method in class net.imagej.render.DummyTextRenderer
setFontSize(int) - Method in interface net.imagej.render.TextRenderer
setFontSmooth(boolean) - Method in class net.imagej.options.OptionsFont
setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.DrawingTool: Sets the style of the drawing font.
setFontStyle(String) - Method in class net.imagej.options.OptionsFont
setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.render.DummyTextRenderer
setFontStyle(TextRenderer.FontStyle) - Method in interface net.imagej.render.TextRenderer
setFPS(double) - Method in class net.imagej.animation.Animation
setFullZoomImages(boolean) - Method in class net.imagej.options.OptionsAppearance
setGenerateDebugInfo(boolean) - Method in class net.imagej.options.OptionsCompiler
setHasChanges(boolean) - Method in class net.imagej.widget.HistogramBundle: Sets the changes flag.
setHeight(int) - Method in class net.imagej.options.OptionsProfilePlot
setHideProcessStackDialog(boolean) - Method in class net.imagej.options.OptionsMisc
setHistogram(int, Histogram1d<?>) - Method in class net.imagej.widget.HistogramBundle: Sets the histogram of interest for this HistogramBundle.
setImag(long) - Method in class net.imagej.types.BigComplex: Sets the imaginary component of this BigComplex to given long value.
setImag(double) - Method in class net.imagej.types.BigComplex: Sets the imaginary component of this BigComplex to given double value.
setImag(BigInteger) - Method in class net.imagej.types.BigComplex: Sets the imaginary component of this BigComplex to given BigInteger value.
setImag(BigDecimal) - Method in class net.imagej.types.BigComplex: Sets the imaginary component of this BigComplex to given BigDecimal value.
setImag(String) - Method in class net.imagej.types.BigComplex: Sets the imaginary component of this BigComplex to given String value.
setImag(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setImag(BigDecimal) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setImag(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setImaginary(float) - Method in class net.imagej.types.BigComplex: Sets the imaginary component of this BigComplex to given float value.
setImaginary(double) - Method in class net.imagej.types.BigComplex: Sets the imaginary component of this BigComplex to given double value.
setImaginary(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setImaginary(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setImaginary(float) - Method in class net.imagej.types.PreciseFixedFloatType
setImaginary(double) - Method in class net.imagej.types.PreciseFixedFloatType
setImaginary(float) - Method in class net.imagej.types.UnboundedIntegerType
setImaginary(double) - Method in class net.imagej.types.UnboundedIntegerType
setImgPlus(ImgPlus<? extends RealType<?>>) - Method in interface net.imagej.Dataset: TODO
setImgPlus(ImgPlus<? extends RealType<?>>) - Method in class net.imagej.DefaultDataset
setIndex(long) - Method in class net.imagej.Position: Sets the Position from a given long index.
setInitialScale(double) - Method in class net.imagej.display.DefaultImageCanvas
setInitialScale(double) - Method in interface net.imagej.display.Zoomable: Sets the scale to use when reverting after zooming.
setInteger(int) - Method in class net.imagej.types.UnboundedIntegerType
setInteger(long) - Method in class net.imagej.types.UnboundedIntegerType
setInterpLineProf(boolean) - Method in class net.imagej.options.OptionsProfilePlot
setInterpZoomedImages(boolean) - Method in class net.imagej.options.OptionsAppearance
setInvertModeLegacy() - Method in class net.imagej.options.OptionsCompatibility
setInvertModeModern() - Method in class net.imagej.options.OptionsCompatibility
setJpegQuality(int) - Method in class net.imagej.options.OptionsInputOutput
setJustification(TextOverlay.Justification) - Method in class net.imagej.overlay.TextOverlay
setJvmArgs(String) - Method in class net.imagej.config.ConfigFileParameters: Sets the value associated with the "jvmargs" key in the launcher configuration file.
setLabelPoints(boolean) - Method in class net.imagej.options.OptionsPointTool
setLast(long) - Method in class net.imagej.animation.Animation
setLastBgColor(ColorRGB) - Method in class net.imagej.options.OptionsChannels
setLastBgColor(ColorRGB, boolean) - Method in class net.imagej.options.OptionsChannels
setLastFgColor(ColorRGB) - Method in class net.imagej.options.OptionsChannels
setLastFgColor(ColorRGB, boolean) - Method in class net.imagej.options.OptionsChannels
setLineColor(ColorRGB) - Method in class net.imagej.options.OptionsOverlay
setLineColor(ColorRGB) - Method in class net.imagej.overlay.AbstractOverlay
setLineColor(ColorRGB) - Method in interface net.imagej.overlay.Overlay: Set the color of the outline line of the overlay, if appropriate
setLineColor(ColorRGB) - Method in class net.imagej.overlay.OverlaySettings
setLineEnd(double[]) - Method in class net.imagej.overlay.LineOverlay
setLineEnd(double, int) - Method in class net.imagej.overlay.LineOverlay
setLineEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.AbstractOverlay
setLineEndArrowStyle(Overlay.ArrowStyle) - Method in interface net.imagej.overlay.Overlay
setLineSlopeIntercept(double, double) - Method in class net.imagej.widget.HistogramBundle: Sets the line equation for the slope line of a histogram.
setLineStart(double[]) - Method in class net.imagej.overlay.LineOverlay
setLineStart(double, int) - Method in class net.imagej.overlay.LineOverlay
setLineStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.AbstractOverlay
setLineStartArrowStyle(Overlay.ArrowStyle) - Method in interface net.imagej.overlay.Overlay
setLineStyle(Overlay.LineStyle) - Method in class net.imagej.options.OptionsOverlay
setLineStyle(Overlay.LineStyle) - Method in class net.imagej.overlay.AbstractOverlay
setLineStyle(Overlay.LineStyle) - Method in interface net.imagej.overlay.Overlay: Set the style of the outline line of the overlay, if appropriate
setLineStyle(Overlay.LineStyle) - Method in class net.imagej.overlay.OverlaySettings
setLineWidth(long) - Method in class net.imagej.DrawingTool: Sets the current drawing line width.
setLineWidth(int) - Method in class net.imagej.options.OptionsLineWidth
setLineWidth(double) - Method in class net.imagej.options.OptionsOverlay
setLineWidth(double) - Method in class net.imagej.overlay.AbstractOverlay
setLineWidth(double) - Method in interface net.imagej.overlay.Overlay: Set the width of the outline line of the overlay, if appropriate
setLineWidth(double) - Method in class net.imagej.overlay.OverlaySettings
setListValues(boolean) - Method in class net.imagej.options.OptionsProfilePlot
setLong(T, long) - Method in interface net.imagej.types.DataType: Sets a given value to a given long.
setLong(ComplexDoubleType, long) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
setLong(Unsigned12BitType, long) - Method in class net.imagej.types.DataType12BitUnsignedInteger
setLong(ShortType, long) - Method in class net.imagej.types.DataType16BitSignedInteger
setLong(UnsignedShortType, long) - Method in class net.imagej.types.DataType16BitUnsignedInteger
setLong(BitType, long) - Method in class net.imagej.types.DataType1BitUnsignedInteger
setLong(FloatType, long) - Method in class net.imagej.types.DataType32BitSignedFloat
setLong(IntType, long) - Method in class net.imagej.types.DataType32BitSignedInteger
setLong(UnsignedIntType, long) - Method in class net.imagej.types.DataType32BitUnsignedInteger
setLong(ComplexFloatType, long) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
setLong(DoubleType, long) - Method in class net.imagej.types.DataType64BitSignedFloat
setLong(LongType, long) - Method in class net.imagej.types.DataType64BitSignedInteger
setLong(ByteType, long) - Method in class net.imagej.types.DataType8BitSignedInteger
setLong(UnsignedByteType, long) - Method in class net.imagej.types.DataType8BitUnsignedInteger
setLong(NativeBoolType, long) - Method in class net.imagej.types.DataTypeBoolean
setLong(BigComplex, long) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
setLong(PreciseFixedFloatType, long) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
setLong(UnboundedIntegerType, long) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
setMarkWidth(int) - Method in class net.imagej.options.OptionsPointTool
setMaxBin(long) - Method in class net.imagej.widget.HistogramBundle: Sets the bin number of the maximum value.
setMaxMemory(int) - Method in class net.imagej.options.OptionsMemoryAndThreads: Sets the number of megabytes of memory that should be allocated for use by ImageJ.
setMaxY(double) - Method in class net.imagej.options.OptionsProfilePlot
setMemoryInMB(int) - Method in class net.imagej.config.ConfigFileParameters: Sets the value of the number of megabytes of ram to allocate.
setMenuFontSize(int) - Method in class net.imagej.options.OptionsAppearance
setMinBin(long) - Method in class net.imagej.widget.HistogramBundle: Sets the bin number of the minimum value.
setMinY(double) - Method in class net.imagej.options.OptionsProfilePlot
setMode(String) - Method in class net.imagej.options.OptionsWandTool
setMoveIsolatedPlugins(boolean) - Method in class net.imagej.options.OptionsMisc
setMultipleBuffers(boolean) - Method in class net.imagej.options.OptionsMemoryAndThreads: Sets whether ImageJ will maintain multiple undo buffers.
setName(String) - Method in class net.imagej.AbstractData
setName(String) - Method in class net.imagej.DefaultDataset
setName(String) - Method in class net.imagej.ImgPlus
setNoImageBorder(boolean) - Method in class net.imagej.options.OptionsAppearance
setNoSaveXValues(boolean) - Method in class net.imagej.options.OptionsProfilePlot
setNumThreads() - Method in class net.imagej.minmax.DefaultMinMaxMethod
setNumThreads(int) - Method in class net.imagej.minmax.DefaultMinMaxMethod
setNumThreads() - Method in interface net.imagej.minmax.MinMaxMethod: Sets number of threads to default
setNumThreads(int) - Method in interface net.imagej.minmax.MinMaxMethod: Sets number of threads to use
setOffset(double) - Method in class net.imagej.units.LinearCalibrator
setOne() - Method in class net.imagej.types.BigComplex: Sets this BigComplex to the unity value.
setOne() - Method in class net.imagej.types.PreciseFixedComplexFloatType
setOne() - Method in class net.imagej.types.PreciseFixedFloatType
setOne() - Method in class net.imagej.types.UnboundedIntegerType
setOpenAs32bitFloat(boolean) - Method in class net.imagej.options.OptionsDicom
setOrigin(double) - Method in class net.imagej.axis.DefaultLinearAxis
setOrigin(double) - Method in interface net.imagej.axis.LinearAxis
setOrigin(double, int) - Method in class net.imagej.overlay.EllipseOverlay
setOrigin(double, int) - Method in class net.imagej.overlay.RectangleOverlay
setPanCenter(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
setPanCenter(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
setPanCenter(RealCoords) - Method in interface net.imagej.display.Pannable: Pans to the given absolute (X, Y) position in data coordinate space.
setPanCenter(IntCoords) - Method in interface net.imagej.display.Pannable: Pans to the given absolute (X, Y) position in panel coordinate space.
setParent(TreeNode<?>) - Method in interface net.imagej.roi.ROITree
setPlanar(boolean) - Method in class net.imagej.command.AbstractPlanarCommand
setPlanar(boolean) - Method in interface net.imagej.command.PlanarCommand
setPlane(int, Object) - Method in interface net.imagej.Dataset: sets a plane of data within the dataset.
setPlane(int, Object) - Method in class net.imagej.DefaultDataset
setPlaneSilently(int, Object) - Method in interface net.imagej.Dataset: sets a plane of data within the dataset.
setPlaneSilently(int, Object) - Method in class net.imagej.DefaultDataset
setPoint(int, double[]) - Method in class net.imagej.overlay.PointOverlay
setPoint1(double[]) - Method in class net.imagej.overlay.AngleOverlay
setPoint1(double, int) - Method in class net.imagej.overlay.AngleOverlay
setPoint2(double[]) - Method in class net.imagej.overlay.AngleOverlay
setPoint2(double, int) - Method in class net.imagej.overlay.AngleOverlay
setPoints(List<double[]>) - Method in class net.imagej.overlay.PointOverlay
setPort(int) - Method in class net.imagej.options.OptionsProxy
setPosition(long, AxisType) - Method in class net.imagej.display.AbstractDataView
setPosition(Localizable) - Method in class net.imagej.display.AbstractDataView
setPosition(int[]) - Method in class net.imagej.display.AbstractDataView
setPosition(long[]) - Method in class net.imagej.display.AbstractDataView
setPosition(int, int) - Method in class net.imagej.display.AbstractDataView
setPosition(long, int) - Method in class net.imagej.display.AbstractDataView
setPosition(long, AxisType) - Method in class net.imagej.display.DefaultDatasetView
setPosition(long, AxisType) - Method in class net.imagej.display.DefaultImageDisplay
setPosition(Localizable) - Method in class net.imagej.display.DefaultImageDisplay
setPosition(int[]) - Method in class net.imagej.display.DefaultImageDisplay
setPosition(long[]) - Method in class net.imagej.display.DefaultImageDisplay
setPosition(int, int) - Method in class net.imagej.display.DefaultImageDisplay
setPosition(long, int) - Method in class net.imagej.display.DefaultImageDisplay
setPosition(long[]) - Method in class net.imagej.DrawingTool: Sets this DrawingHelper's current drawing position.
setPosition(long, int) - Method in class net.imagej.Position: Sets the value of the Position for a given dimension.
setPosition(long[]) - Method in class net.imagej.Position: Sets the values of the Position for all dimensions.
setPosition(int[]) - Method in class net.imagej.Position: Sets the values of the Position for all dimensions.
setPosition(int, int) - Method in class net.imagej.Position: Sets the value of the Position for a given dimension.
setPosition(Localizable) - Method in class net.imagej.Position: Sets the values of the Position for all dimensions.
setPosition(long, AxisType) - Method in interface net.imagej.PositionableByAxis: Sets the position of the element for one dimension.
setPreferredChannel(long) - Method in class net.imagej.DrawingTool: Set the preferred channel to draw on.
setPreferredSize(int, int) - Method in class net.imagej.widget.HistogramBundle: Sets the preferred size for the rendering of this histogram as a widget.
setProxyServer(String) - Method in class net.imagej.options.OptionsProxy
setRadius(double, int) - Method in class net.imagej.overlay.EllipseOverlay
setReal(long) - Method in class net.imagej.types.BigComplex: Sets the real component of this BigComplex to given long value.
setReal(float) - Method in class net.imagej.types.BigComplex: Sets the real component of this BigComplex to given float value.
setReal(double) - Method in class net.imagej.types.BigComplex: Sets the real component of this BigComplex to given double value.
setReal(BigInteger) - Method in class net.imagej.types.BigComplex: Sets the real component of this BigComplex to given BigInteger value.
setReal(BigDecimal) - Method in class net.imagej.types.BigComplex: Sets the real component of this BigComplex to given BigDecimal value.
setReal(String) - Method in class net.imagej.types.BigComplex: Sets the real component of this BigComplex to given String value.
setReal(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setReal(BigDecimal) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setReal(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setReal(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
setReal(float) - Method in class net.imagej.types.PreciseFixedFloatType
setReal(double) - Method in class net.imagej.types.PreciseFixedFloatType
setReal(float) - Method in class net.imagej.types.UnboundedIntegerType
setReal(double) - Method in class net.imagej.types.UnboundedIntegerType
setRegionOfInterest(R) - Method in class net.imagej.overlay.AbstractROIOverlay
setRegionOfInterest(GeneralPathRegionOfInterest) - Method in class net.imagej.overlay.GeneralPathOverlay
setRequireCommandKey(boolean) - Method in class net.imagej.options.OptionsMisc
setRGBMerged(boolean) - Method in interface net.imagej.Dataset: For use in legacy layer only, this flag allows the various legacy layer image translators to support color images correctly.
setRGBMerged(boolean) - Method in class net.imagej.DefaultDataset
setRotateXZ(boolean) - Method in class net.imagej.options.OptionsDicom
setRotateYZ(boolean) - Method in class net.imagej.options.OptionsDicom
setRunGcOnClick(boolean) - Method in class net.imagej.options.OptionsMemoryAndThreads: Sets whether ImageJ will run the garbage collector when user clicks on the status area.
setRunSingleInstanceListener(boolean) - Method in class net.imagej.options.OptionsMisc
setSaveColumnHeaders(boolean) - Method in class net.imagej.options.OptionsInputOutput
setSaveOrderIntel(boolean) - Method in class net.imagej.options.OptionsInputOutput
setSaveRowNumbers(boolean) - Method in class net.imagej.options.OptionsInputOutput
setScale(double) - Method in class net.imagej.axis.DefaultLinearAxis
setScale(double) - Method in interface net.imagej.axis.LinearAxis
setScale(double) - Method in class net.imagej.units.LinearCalibrator
setScaleWhenConverting(boolean) - Method in class net.imagej.options.OptionsConversions
setSelected(boolean) - Method in class net.imagej.display.AbstractDataView
setSelected(boolean) - Method in interface net.imagej.display.DataView: Set the view's selection state.
setSelected(boolean) - Method in class net.imagej.display.OverlayInfo
setSelectionColor(ColorRGB) - Method in class net.imagej.options.OptionsAppearance
setSource(String) - Method in class net.imagej.DefaultDataset
setSource(String) - Method in class net.imagej.ImgPlus
setSource(String) - Method in interface net.imagej.Sourced: Sets the source String
setStackThreads(int) - Method in class net.imagej.options.OptionsMemoryAndThreads: Sets the number of stack threads that should be allocated for use by ImageJ.
setStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.options.OptionsOverlay
setStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.OverlaySettings
setStrokeColor(ColorRGB) - Method in class net.imagej.options.OptionsRoundedRectangleTool
setStrokeWidth(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool
setTableFileExtension(String) - Method in class net.imagej.options.OptionsInputOutput
setTailProportions(double, double) - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod: Sets the fractional proportions of the distribution.
setTargetJavaVersion(String) - Method in class net.imagej.options.OptionsCompiler
setText(String) - Method in class net.imagej.overlay.TextOverlay
setTextAntialiasing(boolean) - Method in class net.imagej.DrawingTool: Turns antialiasing of drawn text on (true) or off (false)
setTextRenderer(TextRenderer) - Method in class net.imagej.DrawingTool
setTheoreticalMinMax(double, double) - Method in class net.imagej.widget.HistogramBundle: Sets the min/max values of the desired range.
setTolerance(double) - Method in class net.imagej.options.OptionsWandTool
setTransparentIndex(int) - Method in class net.imagej.options.OptionsInputOutput
setType(AxisType) - Method in class net.imagej.axis.DefaultTypedAxis
setType(AxisType) - Method in interface net.imagej.axis.TypedAxis: Sets the type of the axis.
setUAxis(int) - Method in class net.imagej.DrawingTool: Sets the U axis index this DrawingTool will work in.
setUnit(String) - Method in class net.imagej.axis.AbstractCalibratedAxis
setUnit(String) - Method in interface net.imagej.axis.CalibratedAxis: Sets the dimension's unit.
setUseInvertingLUT(boolean) - Method in class net.imagej.options.OptionsAppearance
setUseJFileChooser(boolean) - Method in class net.imagej.options.OptionsInputOutput
setUsePtrCursor(boolean) - Method in class net.imagej.options.OptionsMisc
setUseSystemProxy(boolean) - Method in class net.imagej.options.OptionsProxy
setValidBits(int) - Method in class net.imagej.DefaultDataset
setValidBits(int) - Method in interface net.imagej.ImageMetadata: Sets the number of valid bits.
setValidBits(int) - Method in class net.imagej.ImgPlus
setValues(double[]) - Method in class net.imagej.axis.EnumeratedAxis: Sets the axis's calibrated values.
setVAxis(int) - Method in class net.imagej.DrawingTool: Sets the V axis index this DrawingTool will work in.
setVertProfile(boolean) - Method in class net.imagej.options.OptionsProfilePlot
setView(DatasetView) - Method in class net.imagej.command.AbstractPlanarCommand
setView(DatasetView) - Method in interface net.imagej.command.PlanarCommand
setViewportSize(int, int) - Method in class net.imagej.display.DefaultImageCanvas
setViewportSize(int, int) - Method in interface net.imagej.display.ImageCanvas: Sets the dimensions of the viewport in panel coordinates.
setWeightedRgbConversions(boolean) - Method in class net.imagej.options.OptionsConversions
setWidth(int) - Method in class net.imagej.options.OptionsProfilePlot
setyFixedScale(boolean) - Method in class net.imagej.options.OptionsProfilePlot
setZero() - Method in class net.imagej.types.BigComplex: Sets this BigComplex to the zero value.
setZero() - Method in class net.imagej.types.PreciseFixedComplexFloatType
setZero() - Method in class net.imagej.types.PreciseFixedFloatType
setZero() - Method in class net.imagej.types.UnboundedIntegerType
setZoom(double) - Method in class net.imagej.display.DefaultImageCanvas
setZoom(double) - Method in interface net.imagej.display.Zoomable: Zooms to the given scale factor, without changing the viewport's center.
setZoomAndCenter(double) - Method in class net.imagej.display.DefaultImageCanvas
setZoomAndCenter(double, RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
setZoomAndCenter(double) - Method in interface net.imagej.display.Zoomable: Zooms to the given scale factor, recentering the viewport at the center of the data space.
setZoomAndCenter(double, RealCoords) - Method in interface net.imagej.display.Zoomable: Zooms to the given scale factor, recentering the viewport at the specified data coordinates.
setZoomAtPoint(double, RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
setZoomAtPoint(double, IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
setZoomAtPoint(double, RealCoords) - Method in interface net.imagej.display.Zoomable: Zooms to the given scale factor, such that the specified position in data coordinates remains at the same place in the viewport.
setZoomAtPoint(double, IntCoords) - Method in interface net.imagej.display.Zoomable: Zooms to the given scale factor, such that the specified position in panel coordinates remains at the same place in the viewport.
shortName() - Method in interface net.imagej.types.DataType: A short name useful for displaying to user.
shortName() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
shortName() - Method in class net.imagej.types.DataType12BitUnsignedInteger
shortName() - Method in class net.imagej.types.DataType16BitSignedInteger
shortName() - Method in class net.imagej.types.DataType16BitUnsignedInteger
shortName() - Method in class net.imagej.types.DataType1BitUnsignedInteger
shortName() - Method in class net.imagej.types.DataType32BitSignedFloat
shortName() - Method in class net.imagej.types.DataType32BitSignedInteger
shortName() - Method in class net.imagej.types.DataType32BitUnsignedInteger
shortName() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
shortName() - Method in class net.imagej.types.DataType64BitSignedFloat
shortName() - Method in class net.imagej.types.DataType64BitSignedInteger
shortName() - Method in class net.imagej.types.DataType8BitSignedInteger
shortName() - Method in class net.imagej.types.DataType8BitUnsignedInteger
shortName() - Method in class net.imagej.types.DataTypeBoolean
shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
ShortToShortTypeConverter() - Constructor for class net.imagej.convert.NumberToNumericTypeConverters.ShortToShortTypeConverter
ShortTypeToShortConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.ShortTypeToShortConverter
SingleInputPreprocessor<T> - Class in net.imagej.display.process: A base class for preprocessors that populate single input parameters.
SingleInputPreprocessor(Class<T>) - Constructor for class net.imagej.display.process.SingleInputPreprocessor
size() - Method in class net.imagej.DefaultDataset
size() - Method in class net.imagej.ImgPlus
size() - Method in class net.imagej.table.ResultsImg
slope(double, double, double, double) - Static method in class net.imagej.axis.DefaultLinearAxis: Returns the slope of the line connecting two points.
solidLineStyle - Static variable in class net.imagej.options.OptionsOverlay
sort() - Method in class net.imagej.display.OverlayInfoList
Sourced - Interface in net.imagej: Interface for classes who track their source.
SourceOptimizedCompositeXYProjector<A,S extends RandomAccessibleInterval<A> & IterableInterval<A>,T extends RandomAccessibleInterval<ARGBType> & IterableInterval<ARGBType>> - Class in net.imagej.display: As CompositeXYProjector but uses a source that is both a RandomAccessibleInterval and an IterableInterval, and a RandomAccessibleInterval target.
SourceOptimizedCompositeXYProjector(S, T, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imagej.display.SourceOptimizedCompositeXYProjector
SpaceUtils - Class in net.imagej.space: Utility methods for working with EuclideanSpace, particularly TypedSpace.
SPECTRUM - Static variable in class net.imagej.display.ColorTables
sqrt(PreciseFixedFloatType) - Static method in class net.imagej.types.PreciseFixedFloatType: Uses Newton Raphson to compute the square root of a BigDecimal.
start() - Method in class net.imagej.animation.Animation: Starts the animation.
start(ImageDisplay) - Method in interface net.imagej.animation.AnimationService: Starts animation for the given ImageDisplay.
start(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
startWith(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
stop() - Method in class net.imagej.animation.Animation: Stops the animation.
stop(ImageDisplay) - Method in interface net.imagej.animation.AnimationService: Stops animation for the given ImageDisplay.
stop(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
stopAll() - Method in interface net.imagej.animation.AnimationService: Stops all animations.
stopAll() - Method in class net.imagej.animation.DefaultAnimationService
sub(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex: Set self to the result of subtraction between two BigComplex values.
sub(BigComplex) - Method in class net.imagej.types.BigComplex: Subtracts another BigComplex value from self.
sub(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
sub(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
sub(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
sub(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
sub(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
supports(File) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
supportsDisplay(Display<?>) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
supportsOpen(String) - Method in class net.imagej.lut.io.LUTIOPlugin

T

TABLE_PROPERTY - Static variable in interface net.imagej.table.TableService
TableService - Interface in net.imagej.table: Service for working with Tables.
TextOverlay - Class in net.imagej.overlay: Represents an Overlay that contains a string of text.
TextOverlay(Context, double, double, String, TextOverlay.Justification) - Constructor for class net.imagej.overlay.TextOverlay
TextOverlay(Context, double, double, String) - Constructor for class net.imagej.overlay.TextOverlay
TextOverlay(Context, double, double) - Constructor for class net.imagej.overlay.TextOverlay
TextOverlay(Context) - Constructor for class net.imagej.overlay.TextOverlay
TextOverlay.Justification - Enum in net.imagej.overlay
TextRenderer - Interface in net.imagej.render: Basic text renderer interface, which renders text into an int[] buffer.
TextRenderer.FontFamily - Enum in net.imagej.render
TextRenderer.FontStyle - Enum in net.imagej.render
TextRenderer.TextJustification - Enum in net.imagej.render
THREAD_COUNT - Static variable in class net.imagej.util.MirrorWebsite
TIME - Static variable in class net.imagej.axis.Axes: Identifies the Time dimensional type, representing a dimension consisting of time points.
toggle(ImageDisplay) - Method in interface net.imagej.animation.AnimationService: Toggles animation for the given ImageDisplay.
toggle(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
toImgLabeling(ROITree, Interval) - Method in class net.imagej.roi.DefaultROIService
toImgLabeling(Dataset) - Method in interface net.imagej.roi.ROIService: Get the ROIs of a Dataset as ImgLabeling
toImgLabeling(ROITree, Interval) - Method in interface net.imagej.roi.ROIService: Convert the ROIs in a
toInput(double) - Method in interface net.imagej.units.Calibrator: Map an output double value to an input double value.
toInput(double) - Method in class net.imagej.units.LinearCalibrator
toMask(Object) - Method in class net.imagej.roi.DefaultROIService
toMask(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a Mask
toMaskInterval(Object) - Method in class net.imagej.roi.DefaultROIService
toMaskInterval(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a MaskInterval
toMaskPredicate(Object) - Method in class net.imagej.roi.DefaultROIService
toMaskPredicate(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a MaskPredicate.
toOutput(double) - Method in interface net.imagej.units.Calibrator: Map an input double value to an output double value.
toOutput(double) - Method in class net.imagej.units.LinearCalibrator
toRandomAccessibleInterval(Object) - Method in class net.imagej.roi.DefaultROIService
toRandomAccessibleInterval(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a RandomAccessibleInterval<BoolType>; otherwise, an exception is thrown.
toRandomAcessible(Object) - Method in class net.imagej.roi.DefaultROIService
toRandomAcessible(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a RandomAccessible<BoolType>; otherwise, an exception is thrown.
toRealMask(Object) - Method in class net.imagej.roi.DefaultROIService
toRealMask(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a RealMask
toRealMaskRealInterval(Object) - Method in class net.imagej.roi.DefaultROIService
toRealMaskRealInterval(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a RealMaskRealInterval
toRealRandomAccessible(Object) - Method in class net.imagej.roi.DefaultROIService
toRealRandomAccessible(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a RealRandomAccessible.
toRealRandomAccessibleRealInterval(Object) - Method in class net.imagej.roi.DefaultROIService
toRealRandomAccessibleRealInterval(Object) - Method in interface net.imagej.roi.ROIService: Attempts to convert the given Object to a RealRandomAccessibleRealInterval.
toString() - Method in class net.imagej.AbstractData
toString() - Method in class net.imagej.axis.DefaultAxisType
toString() - Method in enum net.imagej.display.ColorMode
toString() - Method in class net.imagej.display.DefaultImageDisplay
toString() - Method in class net.imagej.display.event.AxisEvent
toString() - Method in class net.imagej.display.event.CanvasEvent
toString() - Method in class net.imagej.display.event.DataViewEvent
toString() - Method in class net.imagej.display.event.DelayedPositionEvent
toString() - Method in class net.imagej.display.event.MouseCursorEvent
toString() - Method in class net.imagej.display.event.PanZoomEvent
toString() - Method in class net.imagej.display.event.ViewportResizeEvent
toString() - Method in class net.imagej.display.OverlayInfo
toString() - Method in class net.imagej.Extents
toString() - Method in class net.imagej.Position
toString() - Method in class net.imagej.types.PreciseFixedFloatType
toString() - Method in class net.imagej.types.UnboundedIntegerType
type() - Method in class net.imagej.axis.DefaultTypedAxis
type() - Method in interface net.imagej.axis.TypedAxis: Gets the type of the axis.
typeChange() - Method in interface net.imagej.Dataset: TODO
typeChange() - Method in class net.imagej.DefaultDataset
typed(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
typed(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService: Given an ImgPlus of unknown type this returns a typed ImgPlus of type Type.
TypedAxis - Interface in net.imagej.axis: An axis with an associated AxisType.
typedImg(T) - Method in interface net.imagej.Dataset: TODO
TypedRealInterval<A extends TypedAxis> - Interface in net.imagej.interval: A RealInterval over a TypedSpace.
TypedSpace<A extends TypedAxis> - Interface in net.imagej.space: A Euclidean space with typed dimensional axes.

U

UnboundedIntegerType - Class in net.imagej.types: A BigInteger backed integral type (unlimited range).
UnboundedIntegerType() - Constructor for class net.imagej.types.UnboundedIntegerType
UnboundedIntegerType(UnboundedIntegerType) - Constructor for class net.imagej.types.UnboundedIntegerType
UnboundedIntegerType(long) - Constructor for class net.imagej.types.UnboundedIntegerType
UnboundedIntegerType(BigInteger) - Constructor for class net.imagej.types.UnboundedIntegerType
unit() - Method in class net.imagej.axis.AbstractCalibratedAxis
unit() - Method in interface net.imagej.axis.CalibratedAxis: Gets the dimension's unit.
UnitService - Interface in net.imagej.units: Service for defining units and making unit conversions.
unknown() - Static method in class net.imagej.axis.Axes: Gets an "unknown" axis type.
UNKNOWN_LABEL - Static variable in class net.imagej.axis.Axes: Label for unknown axis types, which are returned by Axes.unknown().
Unsigned12BitTypeToLongConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.Unsigned12BitTypeToLongConverter
Unsigned2BitTypeToLongConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.Unsigned2BitTypeToLongConverter
Unsigned4BitTypeToLongConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.Unsigned4BitTypeToLongConverter
UnsignedByteTypeToIntegerConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.UnsignedByteTypeToIntegerConverter
UnsignedIntTypeToLongConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.UnsignedIntTypeToLongConverter
UnsignedShortTypeToIntegerConverter() - Constructor for class net.imagej.convert.NumericTypeToNumberConverters.UnsignedShortTypeToIntegerConverter
Unwrappers - Class in net.imagej.roi: Unwraps MaskPredicates which have been wrapped as (Real)RandomAccessibles, and vice versa.
Unwrappers.MaskAsRandomAccessibleUnwrapper - Class in net.imagej.roi: Unwraps MaskAsRandomAccessible, provided it is of type BoolType.
Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper - Class in net.imagej.roi: Unwraps MaskIntervalAsRandomAccessibleInterval, provided it is of type BoolType.
Unwrappers.RandomAccessibleAsMaskUnwrapper - Class in net.imagej.roi: Unwraps RandomAccessibleAsMask, provided it is of type BoolType.
Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper - Class in net.imagej.roi: Unwraps RandomAccessibleIntervalAsMaskInterval, provided it is of type BoolType.
Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper - Class in net.imagej.roi: Unwraps RealMaskAsRealRandomAccessible, provided it is of type BoolType.
Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper - Class in net.imagej.roi: Unwraps RealMaskRealIntervalAsRealRandomAccessibleRealInterval, provided it is of type BoolType.
Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper - Class in net.imagej.roi: Unwraps RealRandomAccessibleAsRealMask, provided it is of type BoolType.
Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper - Class in net.imagej.roi: Unwraps RealRandomAccessibleRealIntervalAsRealMaskRealInterval, provided it is of type BoolType.
update() - Method in interface net.imagej.Data: Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.
update() - Method in interface net.imagej.Dataset: Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.
update() - Method in class net.imagej.DefaultDataset
update() - Method in interface net.imagej.display.DataView: Updates and redraws the view onscreen.
update() - Method in class net.imagej.display.DefaultDatasetView
update() - Method in class net.imagej.display.DefaultImageDisplay
update() - Method in class net.imagej.display.DefaultOverlayView
update() - Method in class net.imagej.interval.CombinedRealInterval
update() - Method in class net.imagej.overlay.AbstractOverlay
update() - Method in interface net.imagej.overlay.Overlay: Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.
update() - Method in class net.imagej.space.CombinedSpace: Recomputes the combined space based on its current constituents.
updateInput(ModuleItem<?>) - Method in class net.imagej.command.InteractiveImageCommand
updateLabel() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer: Recalculate the label text and update it on the panel.
updateSettings(OverlaySettings) - Method in class net.imagej.options.OptionsOverlay: Updates the given overlay settings to match these options.
updateTitle() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
upperBound(T) - Method in interface net.imagej.types.DataType: Sets a given variable to the upper bound of the underlying NumericType.
upperBound(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
upperBound(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
upperBound(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
upperBound(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
upperBound(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
upperBound(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
upperBound(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
upperBound(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
upperBound(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
upperBound(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
upperBound(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
upperBound(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
upperBound(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
upperBound(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
upperBound(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
upperBound(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
upperBound(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
userExists(String) - Method in class net.imagej.util.MediaWikiClient

V

value(double, String, String) - Method in class net.imagej.units.DefaultUnitService
value(double, String, String) - Method in interface net.imagej.units.UnitService: Returns a value after conversion between two compatible types of units.
valueEquals(BigComplex) - Method in class net.imagej.types.BigComplex
valueEquals(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
valueEquals(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
valueEquals(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
valueOf(String) - Static method in enum net.imagej.display.ColorMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.CompositeOverlay.Operation: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.Overlay.ArrowStyle: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.Overlay.LineStyle: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.TextOverlay.Justification: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.render.TextRenderer.FontFamily: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.render.TextRenderer.FontStyle: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.render.TextRenderer.TextJustification: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ui.viewer.image.AbstractImageDisplayViewer.ZoomScaleOption: Returns the enum constant of this type with the specified name.
values() - Static method in enum net.imagej.display.ColorMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.CompositeOverlay.Operation: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.Overlay.ArrowStyle: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.Overlay.LineStyle: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.TextOverlay.Justification: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.render.TextRenderer.FontFamily: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.render.TextRenderer.FontStyle: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.render.TextRenderer.TextJustification: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ui.viewer.image.AbstractImageDisplayViewer.ZoomScaleOption: Returns an array containing the constants of this enum type, in the order they are declared.
Variable1Axis - Class in net.imagej.axis: Abstract superclass for axes with one variable.
Variable1Axis(AxisType) - Constructor for class net.imagej.axis.Variable1Axis
Variable1Axis(AxisType, String, double) - Constructor for class net.imagej.axis.Variable1Axis
Variable2Axis - Class in net.imagej.axis: Abstract superclass for axes with two variables.
Variable2Axis(AxisType) - Constructor for class net.imagej.axis.Variable2Axis
Variable2Axis(AxisType, String, double, double) - Constructor for class net.imagej.axis.Variable2Axis
Variable3Axis - Class in net.imagej.axis: Abstract superclass for axes with three variables.
Variable3Axis(AxisType) - Constructor for class net.imagej.axis.Variable3Axis
Variable3Axis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.Variable3Axis
Variable4Axis - Class in net.imagej.axis: Abstract superclass for axes with four variables.
Variable4Axis(AxisType) - Constructor for class net.imagej.axis.Variable4Axis
Variable4Axis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.Variable4Axis
VariableAxis - Class in net.imagej.axis: An CalibratedAxis whose calibration is defined by an equation with one or more variables.
VariableAxis(AxisType) - Constructor for class net.imagej.axis.VariableAxis
VariableAxis(AxisType, String) - Constructor for class net.imagej.axis.VariableAxis
vars() - Method in class net.imagej.axis.VariableAxis: Gets the set of variables with assigned values.
view(DisplayWindow, Display<?>) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
ViewportResizeEvent - Class in net.imagej.display.event: An event indicating an ImageCanvas viewport has changed size.
ViewportResizeEvent(ImageCanvas) - Constructor for class net.imagej.display.event.ViewportResizeEvent

W

WindowService - Interface in net.imagej.display: Interface for service that keeps track of open windows, including management of the Windows menu.
wrap(Img<T>) - Static method in class net.imagej.ImgPlus: Ensures the given Img is an ImgPlus, wrapping if necessary.
wrap(Img<T>, ImgPlusMetadata) - Static method in class net.imagej.ImgPlus: Ensures the given Img is an ImgPlus, wrapping if necessary.
wrapRAI(RandomAccessibleInterval<T>) - Static method in class net.imagej.ImgPlus: Wraps a RandomAccessibleInterval into an ImgPlus.
wrapToImg(RandomAccessibleInterval<T>) - Static method in class net.imagej.ImgPlus: Wraps a RandomAccessibleInterval into an Img.
writeExternal(ObjectOutput) - Method in class net.imagej.AbstractData
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.AbstractOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.AngleOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.BinaryMaskOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.CompositeOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.EllipseOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.GeneralPathOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.LineOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.PointOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.PolygonOverlay
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.RectangleOverlay

X

X - Static variable in class net.imagej.axis.Axes: Identifies the X dimensional type, representing a dimension in the first (X) spatial dimension.
xor(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
xyPlane() - Method in interface net.imagej.display.DatasetView
xyPlane(RandomAccessibleInterval<? extends RealType<?>>) - Method in interface net.imagej.display.DatasetView
xyPlane() - Method in class net.imagej.display.DefaultDatasetView
xyPlane(RandomAccessibleInterval<? extends RealType<?>>) - Method in class net.imagej.display.DefaultDatasetView

Y

Y - Static variable in class net.imagej.axis.Axes: Identifies the Y dimensional type, representing a dimension in the second (Y) spatial dimension.
YELLOW - Static variable in class net.imagej.display.ColorTables

Z

Z - Static variable in class net.imagej.axis.Axes: Identifies the Z dimensional type, representing a dimension in the third (Z) spatial dimension.
zoom100Percent(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
zoom100Percent(ImageDisplay) - Method in interface net.imagej.display.ZoomService: Zooms the given image display to 100% resolution.
Zoomable - Interface in net.imagej.display: Defines methods needed to adjust the zoom of an ImageCanvas.
zoomIn() - Method in class net.imagej.display.DefaultImageCanvas
zoomIn(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
zoomIn(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
zoomIn(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
zoomIn() - Method in interface net.imagej.display.Zoomable: Zooms in by the default amount, without changing the viewport's center.
zoomIn(RealCoords) - Method in interface net.imagej.display.Zoomable: Zooms in by the default amount, such that the specified position in data coordinates remains at the same place in the viewport.
zoomIn(IntCoords) - Method in interface net.imagej.display.Zoomable: Zooms in by the default amount, such that the specified position in panel coordinates remains at the same place in the viewport.
zoomIn(ImageDisplay) - Method in interface net.imagej.display.ZoomService: Zooms in on the given image display.
zoomOriginalScale(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
zoomOriginalScale(ImageDisplay) - Method in interface net.imagej.display.ZoomService: Zooms the given image display at the scale it was originally viewed at.
zoomOut() - Method in class net.imagej.display.DefaultImageCanvas
zoomOut(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
zoomOut(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
zoomOut(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
zoomOut() - Method in interface net.imagej.display.Zoomable: Zooms out by the default amount, without changing the viewport's center.
zoomOut(RealCoords) - Method in interface net.imagej.display.Zoomable: Zooms out by the default amount, such that the specified position in data coordinates remains at the same place in the viewport.
zoomOut(IntCoords) - Method in interface net.imagej.display.Zoomable: Zooms out by the default amount, such that the specified position in panel coordinates remains at the same place in the viewport.
zoomOut(ImageDisplay) - Method in interface net.imagej.display.ZoomService: Zooms out on the given image display.
ZoomService - Interface in net.imagej.display: Interface for services that perform zoom operations on ImageDisplays.
zoomSet(ImageDisplay, double, double, double) - Method in class net.imagej.display.DefaultZoomService
zoomSet(ImageDisplay, double, double, double) - Method in interface net.imagej.display.ZoomService: Zooms in on the center of the given image display at the specified magnification level and center coordinates.
zoomToFit(IntRect) - Method in class net.imagej.display.DefaultImageCanvas
zoomToFit(RealRect) - Method in class net.imagej.display.DefaultImageCanvas
zoomToFit(RealRect) - Method in interface net.imagej.display.Zoomable: Zoom the viewport to fit the given bounding box in data coordinates.
zoomToFit(IntRect) - Method in interface net.imagej.display.Zoomable: Zooms the viewport to fit the given bounding box in panel coordinates.
zoomToSelection(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
zoomToSelection(ImageDisplay) - Method in interface net.imagej.display.ZoomService: Zooms in on the given image display's currently selected region.

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