io.scif.img.cell.loaders

Interface SCIFIOArrayLoader<A>

All Known Implementing Classes:

AbstractArrayLoader, ByteAccessLoader, ByteArrayLoader, CharAccessLoader, CharArrayLoader, DoubleAccessLoader, DoubleArrayLoader, FloatAccessLoader, FloatArrayLoader, IntAccessLoader, IntArrayLoader, LongAccessLoader, LongArrayLoader, ShortAccessLoader, ShortArrayLoader

public interface SCIFIOArrayLoader<A>

Interface for requesting arrays from SCIFIO Readers by SCIFIOCellImgs.

Author:

Mark Hiner

Method Summary

Modifier and Type	Method and Description
A	emptyArray(int entities)
int	getBitsPerElement()
A	loadArray(net.imglib2.Interval bounds)
net.imglib2.display.ColorTable	loadTable(int imageIndex, int planeIndex) Returns the ColorTable for a given set of indices.
void	setIndex(int index)

Method Detail

getBitsPerElement

int getBitsPerElement()

Returns:

Bits per element for the type of this loader.

loadArray

A loadArray(net.imglib2.Interval bounds)

Parameters:

bounds - bounds of the plane.

Returns:

An opened plane using the given bounds.

emptyArray

A emptyArray(int entities)

Parameters:

entities - Desired entity capacity

Returns:

An empty array of this loader's type, capable of holding the given number of entities.

setIndex

void setIndex(int index)

Parameters:

index - The image index this loader should use when opening planes.

loadTable

net.imglib2.display.ColorTable loadTable(int imageIndex,
                                         int planeIndex)
                                  throws FormatException,
                                         IOException

Returns the ColorTable for a given set of indices. If the desired plane has already been opened, the table should be cached. Otherwise, this will trigger the loading of a small sub-plane to access the desired table.

Parameters:

imageIndex - Image index of desired ColorTable

planeIndex - Plane index of desired ColorTable

Returns:

The ColorTable for the specified indices

Throws:

FormatException

IOException