io.scif.img.cell

Class SCIFIOCellImgFactory<T extends net.imglib2.type.NativeType<T>>

java.lang.Object

net.imglib2.img.ImgFactory<T>

net.imglib2.img.NativeImgFactory<T>

io.scif.img.cell.SCIFIOCellImgFactory<T>

public class SCIFIOCellImgFactory<T extends net.imglib2.type.NativeType<T>>
extends net.imglib2.img.NativeImgFactory<T>

Factory for creating SCIFIOCellImgs. See DiskCachedCellImgOptions for available configuration options and defaults.

Author:

Tobias Pietzsch, Mark Hiner

Constructor Summary

Constructors

Constructor and Description
SCIFIOCellImgFactory() Deprecated.
SCIFIOCellImgFactory(int... cellDimensions) Deprecated.
SCIFIOCellImgFactory(T type) Create a new SCIFIOCellImgFactory with default configuration.
SCIFIOCellImgFactory(T type, net.imglib2.cache.img.DiskCachedCellImgOptions optional) Create a new SCIFIOCellImgFactory with the specified configuration.

Method Summary

Modifier and Type	Method and Description
SCIFIOCellImg<T,?>	create(net.imglib2.Dimensions dimensions)
SCIFIOCellImg<T,?>	create(int[] dimensions)
SCIFIOCellImg<T,?>	create(long... dimensions)
SCIFIOCellImg<T,?>	create(long[] dim, T type) Deprecated.
<S> net.imglib2.img.ImgFactory<S>	imgFactory(S type)
Reader	reader()
void	setReader(Reader r, int imageIndex)
void	setSubRegion(ImageRegion region)

Methods inherited from class net.imglib2.img.ImgFactory

cache, create, create, create, create, create, imgFactory, type

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SCIFIOCellImgFactory

public SCIFIOCellImgFactory(T type)

Create a new SCIFIOCellImgFactory with default configuration.

SCIFIOCellImgFactory

public SCIFIOCellImgFactory(T type,
                            net.imglib2.cache.img.DiskCachedCellImgOptions optional)

Create a new SCIFIOCellImgFactory with the specified configuration.

Parameters:

optional - configuration options.

SCIFIOCellImgFactory

@Deprecated
public SCIFIOCellImgFactory()

Deprecated.

SCIFIOCellImgFactory

@Deprecated
public SCIFIOCellImgFactory(int... cellDimensions)

Deprecated.

Method Detail

create

public SCIFIOCellImg<T,?> create(long... dimensions)

Overrides:

create in class net.imglib2.img.NativeImgFactory<T extends net.imglib2.type.NativeType<T>>

create

public SCIFIOCellImg<T,?> create(net.imglib2.Dimensions dimensions)

Overrides:

create in class net.imglib2.img.NativeImgFactory<T extends net.imglib2.type.NativeType<T>>

create

public SCIFIOCellImg<T,?> create(int[] dimensions)

Overrides:

create in class net.imglib2.img.NativeImgFactory<T extends net.imglib2.type.NativeType<T>>

reader

public Reader reader()

Returns:

The Reader attached to this factory. Will be used for any SCIFIOCellImg instances created for dynamic loading.

setReader

public void setReader(Reader r,
                      int imageIndex)

Parameters:

r - Reader to use for any created SCIFIOCellImgs.

imageIndex - Image index within the given reader that will be loaded by SCIFIOCellImgs.

setSubRegion

public void setSubRegion(ImageRegion region)

Parameters:

region - The ImageRegion that will be operated on by any created SCIFIOCellImgs.

imgFactory

public <S> net.imglib2.img.ImgFactory<S> imgFactory(S type)
                                             throws net.imglib2.exception.IncompatibleTypeException

Specified by:

imgFactory in class net.imglib2.img.ImgFactory<T extends net.imglib2.type.NativeType<T>>

Throws:

net.imglib2.exception.IncompatibleTypeException

create

@Deprecated
public SCIFIOCellImg<T,?> create(long[] dim,
                                             T type)

Deprecated.

Specified by:

create in class net.imglib2.img.NativeImgFactory<T extends net.imglib2.type.NativeType<T>>