Uses of Class
io.scif.codec.CodecOptions

Packages that use CodecOptions

Package	Description
io.scif	Provides the interfaces and default implementations for the components of SCIFIO, and the context for instantiating these components.
io.scif.codec	Codecs for encoding and decoding streams of bytes.
io.scif.config	This package provides configuration options for all SCIFIO components.
io.scif.formats.tiff	This package contains utility classes for working with a variety of Tiff-based formats.

Uses of CodecOptions in io.scif

Methods in io.scif that return CodecOptions

Modifier and Type	Method and Description
CodecOptions	AbstractWriter.getCodecOptions()
CodecOptions	Writer.getCodecOptions()

Uses of CodecOptions in io.scif.codec

Subclasses of CodecOptions in io.scif.codec

Modifier and Type	Class and Description
class	HuffmanCodecOptions Options for compressing and decompressing Huffman data.
class	JPEG2000CodecOptions Options for compressing and decompressing JPEG-2000 data.
class	MJPBCodecOptions Options for compressing and decompressing MJPB data.
class	NikonCodecOptions Options for compressing and decompressing Nikon NEF data.

Methods in io.scif.codec that return CodecOptions

Modifier and Type	Method and Description
static CodecOptions	CodecOptions.getDefaultOptions() Return CodecOptions with reasonable default values.

Methods in io.scif.codec with parameters of type CodecOptions

Modifier and Type	Method and Description
byte[]	Codec.compress(byte[][] data, CodecOptions options) Compresses a block of data.
byte[]	AbstractCodec.compress(byte[][] data, CodecOptions options) 2D data block encoding default implementation.
byte[]	JPEG2000Codec.compress(byte[] data, CodecOptions options) The CodecOptions parameter should have the following fields set: width height bitsPerSample channels interleaved littleEndian lossless
byte[]	LuraWaveCodec.compress(byte[] data, CodecOptions options)
byte[]	MJPBCodec.compress(byte[] data, CodecOptions options)
byte[]	Codec.compress(byte[] data, CodecOptions options) Compresses a block of data.
byte[]	JPEGCodec.compress(byte[] data, CodecOptions options) The CodecOptions parameter should have the following fields set: width height channels bitsPerSample interleaved littleEndian signed
byte[]	PassthroughCodec.compress(byte[] data, CodecOptions options)
byte[]	LZWCodec.compress(byte[] input, CodecOptions options)
byte[]	QTRLECodec.compress(byte[] data, CodecOptions options)
byte[]	NikonCodec.compress(byte[] data, CodecOptions options)
byte[]	PackbitsCodec.compress(byte[] data, CodecOptions options)
byte[]	LosslessJPEGCodec.compress(byte[] data, CodecOptions options)
byte[]	MSVideoCodec.compress(byte[] data, CodecOptions options)
byte[]	RPZACodec.compress(byte[] input, CodecOptions options)
byte[]	HuffmanCodec.compress(byte[] data, CodecOptions options)
byte[]	MSRLECodec.compress(byte[] data, CodecOptions options)
byte[]	ZlibCodec.compress(byte[] data, CodecOptions options)
byte[]	Base64Codec.compress(byte[] input, CodecOptions options)
byte[]	Codec.decompress(byte[][] data, CodecOptions options) Decompresses a block of data.
byte[]	AbstractCodec.decompress(byte[][] data, CodecOptions options) 2D data block decoding default implementation.
byte[]	JPEG2000Codec.decompress(byte[] buf, CodecOptions options) The CodecOptions parameter should have the following fields set: interleaved littleEndian
byte[]	LuraWaveCodec.decompress(byte[] buf, CodecOptions options) The CodecOptions parameter should have the following fields set: maxBytes
byte[]	Codec.decompress(byte[] data, CodecOptions options) Decompresses a block of data.
byte[]	PassthroughCodec.decompress(byte[] data, CodecOptions options)
byte[]	QTRLECodec.decompress(byte[] data, CodecOptions options) The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage
byte[]	AbstractCodec.decompress(byte[] data, CodecOptions options)
byte[]	JPEG2000Codec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: interleaved littleEndian
byte[]	LuraWaveCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options)
byte[]	MJPBCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter must be an instance of MJPBCodecOptions, and should have the following fields set: interlaced width height bitsPerSample littleEndian interleaved
byte[]	Codec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) Decompresses data from the given DataHandle.
byte[]	JPEGCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: interleaved littleEndian
byte[]	PassthroughCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options)
byte[]	LZWCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: maxBytes
byte[]	QTRLECodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options)
byte[]	NikonCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter must be an instance of NikonCodecOptions , and should have the following fields set: vPredictor curve split bitsPerSample maxBytes width height
byte[]	PackbitsCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: maxBytes
byte[]	LosslessJPEGCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: interleaved littleEndian
byte[]	MSVideoCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: width height bitsPerSample previousImage
byte[]	RPZACodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: width height
byte[]	HuffmanCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter must be an instance of HuffmanCodecOptions, and should have the following fields set: table bitsPerSample maxBytes
byte[]	MSRLECodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options) The CodecOptions parameter should have the following fields set: width height previousImage
byte[]	ZlibCodec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options)
byte[]	Base64Codec.decompress(org.scijava.io.handle.DataHandle<org.scijava.io.location.Location> in, CodecOptions options)
static JPEG2000CodecOptions	JPEG2000CodecOptions.getDefaultOptions(CodecOptions options) Return JPEG2000CodecOptions using the given CodecOptions as the default.
int	HuffmanCodec.getSample(BitBuffer bb, CodecOptions options)

Constructors in io.scif.codec with parameters of type CodecOptions

Constructor and Description
CodecOptions(CodecOptions options) Construct a new CodecOptions using the given CodecOptions.
JPEG2000CodecOptions(CodecOptions options) Creates a new instance with options.

Uses of CodecOptions in io.scif.config

Methods in io.scif.config that return CodecOptions

Modifier and Type	Method and Description
CodecOptions	SCIFIOConfig.writerGetCodecOptions()

Methods in io.scif.config with parameters of type CodecOptions

Modifier and Type	Method and Description
SCIFIOConfig	SCIFIOConfig.writerSetCodecOptions(CodecOptions options)

Uses of CodecOptions in io.scif.formats.tiff

Methods in io.scif.formats.tiff that return CodecOptions

Modifier and Type	Method and Description
CodecOptions	TiffParser.getCodecOptions() Retrieves the current set of codec options being used to decompress pixel data.
CodecOptions	TiffCompression.getCompressionCodecOptions(IFD ifd) Creates a set of codec options for compression.
CodecOptions	TiffCompression.getCompressionCodecOptions(IFD ifd, CodecOptions opt) Creates a set of codec options for compression.

Methods in io.scif.formats.tiff with parameters of type CodecOptions

Modifier and Type	Method and Description
byte[]	TiffCompression.compress(CodecService codecService, byte[] input, CodecOptions options) Encodes a strip of data.
byte[]	TiffCompression.decompress(CodecService codecService, byte[] input, CodecOptions options) Decodes a strip of data.
CodecOptions	TiffCompression.getCompressionCodecOptions(IFD ifd, CodecOptions opt) Creates a set of codec options for compression.
void	TiffSaver.setCodecOptions(CodecOptions options) Sets the codec options.
void	TiffParser.setCodecOptions(CodecOptions codecOptions) Sets the codec options to be used when decompressing pixel data.