ome.services.blitz.measurements

Class MeasurementStore

java.lang.Object

ome.services.blitz.measurements.MeasurementStore

All Implemented Interfaces:

OmeroMeasurementStore

public class MeasurementStore
extends Object
implements OmeroMeasurementStore

Parser API implementation for storing result measurements from SPW companion files as ROIs and OMERO.tables.

Since:

Beta4.1

Constructor Summary

Constructors

Constructor and Description
MeasurementStore(LocalUpdate update, omero.grid.TablePrx table)

Method Summary

Modifier and Type	Method and Description
void	addCircle(String roiLsid, double x, double y, double r)
void	addObject(String lsid, IObject obj)
void	addObjects(Map<String,IObject> map)
void	addRows(Object[][] rows) Adds an array of rows (Object[]) to the store.
List<Long>	getRoiIds() Returns the ids of all Roi instances created during the save method.
omero.grid.TablePrx	getTable() Returns the Table proxy which is in use by this service.
void	initialize(String[] headers, String[] idTypes, Class[] types, Map<String,Object> metadata)
void	save()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MeasurementStore

public MeasurementStore(LocalUpdate update,
                        omero.grid.TablePrx table)
                 throws omero.ServerError

Throws:

omero.ServerError

Method Detail

initialize

public void initialize(String[] headers,
                       String[] idTypes,
                       Class[] types,
                       Map<String,Object> metadata)
                throws omero.ServerError

Specified by:

initialize in interface OmeroMeasurementStore

Throws:

omero.ServerError

addObject

public void addObject(String lsid,
                      IObject obj)

Specified by:

addObject in interface OmeroMeasurementStore

addObjects

public void addObjects(Map<String,IObject> map)

Specified by:

addObjects in interface OmeroMeasurementStore

addRows

public void addRows(Object[][] rows)
             throws omero.ServerError

Description copied from interface: OmeroMeasurementStore

Adds an array of rows (Object[]) to the store. These rows might be indexed by an LSID which correlates to an added ROI. For each call to OmeroMeasurementStore.addRows(Object[][]) a call to OmeroMeasurementStore.save() must be made. This allows a single measurement store to be filled with the values from multiple measurement files. To differentiate between the various files, include a File lsid column during the initialization phase.

Specified by:

addRows in interface OmeroMeasurementStore

Throws:

omero.ServerError

addCircle

public void addCircle(String roiLsid,
                      double x,
                      double y,
                      double r)
               throws omero.ServerError

Specified by:

addCircle in interface OmeroMeasurementStore

Throws:

omero.ServerError

save

public void save()
          throws Exception

Specified by:

save in interface OmeroMeasurementStore

Throws:

Exception

getRoiIds

public List<Long> getRoiIds()

Description copied from interface: OmeroMeasurementStore

Returns the ids of all Roi instances created during the save method. If Roi creation failed or if OmeroMeasurementStore.save() has not been called, this will return null.

Specified by:

getRoiIds in interface OmeroMeasurementStore

getTable

public omero.grid.TablePrx getTable()

Description copied from interface: OmeroMeasurementStore

Returns the Table proxy which is in use by this service.

Specified by:

getTable in interface OmeroMeasurementStore

Returns:

See above.