org.micromanager

Interface Application

public interface Application

Provides access to and control of various aspects of the user interface, allowing code to directly update and control the GUI. This interface can be accessed from the Studio by calling Studio.getApplication() or Studio.app().

Method Summary

Modifier and Type	Method and Description
ApplicationSkin	getApplicationSkin() Provides access to the application skin API for determining colors for various GUI components.
double	getChannelExposureTime(java.lang.String channelGroup, java.lang.String channel, double defaultExp) Retrieve the exposure time that has been set for the specified channel.
javax.swing.JFrame	getMainWindow() Provide access to the main window of the program.
void	makeActive() Move the main Micro-Manager window to the top of the user interface.
void	refreshGUI() Updates the GUI so that its state reflects the current state of the hardware (as understood by the Micro-Manager Core).
void	refreshGUIFromCache() Updates the GUI so that its state reflects the current state of the hardware (as understood by the Micro-Manager Core).
void	saveConfigPresets(java.lang.String path, boolean allowOverwrite) Save the current state of the config file to the specified path.
void	setChannelExposureTime(java.lang.String channelGroup, java.lang.String channel, double exposure) Updates the exposure time associated with the given preset.
void	setExposure(double exposureMs) Set the exposure time for the current channel (if any).
void	setROI(java.awt.Rectangle rect) Set the default camera's ROI -- a convenience function.
void	showAutofocusDialog() Pop up the dialog used to configure the autofocus settings for the current autofocus device.
void	showPositionList() Display the position list dialog.
ApplicationSkin	skin() Provides access to the application skin API for determining colors for various GUI components.

Method Detail

refreshGUI

void refreshGUI()

Updates the GUI so that its state reflects the current state of the hardware (as understood by the Micro-Manager Core). This method will poll each device in the system for its current state, which may take significant time. Compare refreshGUIFromCache().

refreshGUIFromCache

void refreshGUIFromCache()

Updates the GUI so that its state reflects the current state of the hardware (as understood by the Micro-Manager Core). This method will pull values from the Core's System State Cache, which is fast but may not necessarily reflect the actual state of hardware.

setExposure

void setExposure(double exposureMs)

Set the exposure time for the current channel (if any). Equivalent to updating the exposure time field in the main window.

Parameters:

exposureMs - Exposure time, in milliseconds.

setChannelExposureTime

void setChannelExposureTime(java.lang.String channelGroup,
                            java.lang.String channel,
                            double exposure)

Updates the exposure time associated with the given preset. If the channel-group and channel name match the current active channel settings, then the displayed exposure time will also be updated.

Parameters:

channelGroup - Name of the config group used to control the channel.

channel - Name of the preset in the config group that refers to the channel that should be updated.

exposure - New exposure time to set.

getChannelExposureTime

double getChannelExposureTime(java.lang.String channelGroup,
                              java.lang.String channel,
                              double defaultExp)

Retrieve the exposure time that has been set for the specified channel.

Parameters:

channelGroup - Name of the config group used to control the channel.

channel - Name of the preset in the config group that refers to the channel whose exposure time is desired.

defaultExp - Default value to return if no exposure time is found.

Returns:

Exposure time for the channel, or the provided default value.

saveConfigPresets

void saveConfigPresets(java.lang.String path,
                       boolean allowOverwrite)
                throws java.io.IOException

Save the current state of the config file to the specified path. If you have generated new config groups and/or presets, they will be included in the new file.

Parameters:

path - Path to save the file to.

allowOverwrite - If true, any existing file at the specified path will be overwritten.

Throws:

java.io.IOException - If shouldOverwrite is false and there is already a file at the chosen path.

showAutofocusDialog

void showAutofocusDialog()

Pop up the dialog used to configure the autofocus settings for the current autofocus device.

showPositionList

void showPositionList()

Display the position list dialog.

setROI

void setROI(java.awt.Rectangle rect)
     throws java.lang.Exception

Set the default camera's ROI -- a convenience function. Will stop and start Live mode for you, and update the GUI's display of values such as the view dimensions.

Parameters:

rect - Rectangle defining the ROI

Throws:

java.lang.Exception - if there is an error in the Core when setting the ROI

makeActive

void makeActive()

Move the main Micro-Manager window to the top of the user interface.

getMainWindow

javax.swing.JFrame getMainWindow()

Provide access to the main window of the program. This is largely intended to allow client code to position their windows with respect to the main window.

Returns:

the main Window

skin

ApplicationSkin skin()

Provides access to the application skin API for determining colors for various GUI components.

Returns:

ApplicationSkin instance.

getApplicationSkin

ApplicationSkin getApplicationSkin()

Provides access to the application skin API for determining colors for various GUI components. Identical to skin() except in name.

Returns:

ApplicationSkin instance.