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A

accumulate(String, Object) - Method in class mmcorej.org.json.JSONObject
Accumulate values under a key.
ActionType - Class in mmcorej
 
add(boolean) - Method in class mmcorej.BooleanVector
 
add(char) - Method in class mmcorej.CharVector
 
add(double) - Method in class mmcorej.DoubleVector
 
add(int) - Method in class mmcorej.LongVector
 
add(String) - Method in class mmcorej.StrVector
 
add(long) - Method in class mmcorej.UnsignedVector
 
addGalvoPolygonVertex(String, int, double, double) - Method in class mmcorej.CMMCore
 
addSetting(PropertySetting) - Method in class mmcorej.Configuration
 
AddValue(String) - Method in class mmcorej.MetadataArrayTag
 
AfterLoadSequence - Static variable in class mmcorej.ActionType
 
AfterSet - Static variable in class mmcorej.ActionType
 
AMP - Static variable in class mmcorej.org.json.XML
The Character '&'.
AnyType - Static variable in class mmcorej.DeviceType
 
APOS - Static variable in class mmcorej.org.json.XML
The Character '''.
array() - Method in class mmcorej.org.json.JSONWriter
Begin appending a new array.
Attention - Static variable in class mmcorej.DeviceNotification
 
AutoFocusDevice - Static variable in class mmcorej.DeviceType
 

B

back() - Method in class mmcorej.org.json.JSONTokener
Back up one character.
BANG - Static variable in class mmcorej.org.json.XML
The Character '!'.
BeforeGet - Static variable in class mmcorej.ActionType
 
BooleanVector - Class in mmcorej
 
BooleanVector(long, boolean) - Constructor for class mmcorej.BooleanVector
 
BooleanVector() - Constructor for class mmcorej.BooleanVector
 
BooleanVector(long) - Constructor for class mmcorej.BooleanVector
 
BooleanVector_add(long, BooleanVector, boolean) - Static method in class mmcorej.MMCoreJJNI
 
BooleanVector_capacity(long, BooleanVector) - Static method in class mmcorej.MMCoreJJNI
 
BooleanVector_clear(long, BooleanVector) - Static method in class mmcorej.MMCoreJJNI
 
BooleanVector_get(long, BooleanVector, int) - Static method in class mmcorej.MMCoreJJNI
 
BooleanVector_isEmpty(long, BooleanVector) - Static method in class mmcorej.MMCoreJJNI
 
BooleanVector_reserve(long, BooleanVector, long) - Static method in class mmcorej.MMCoreJJNI
 
BooleanVector_set(long, BooleanVector, int, boolean) - Static method in class mmcorej.MMCoreJJNI
 
BooleanVector_size(long, BooleanVector) - Static method in class mmcorej.MMCoreJJNI
 

C

CameraDevice - Static variable in class mmcorej.DeviceType
 
CanCommunicate - Static variable in class mmcorej.DeviceDetectionStatus
 
CanCommunicate_get() - Static method in class mmcorej.MMCoreJJNI
 
CanNotCommunicate - Static variable in class mmcorej.DeviceDetectionStatus
 
CanNotCommunicate_get() - Static method in class mmcorej.MMCoreJJNI
 
capacity() - Method in class mmcorej.BooleanVector
 
capacity() - Method in class mmcorej.CharVector
 
capacity() - Method in class mmcorej.DoubleVector
 
capacity() - Method in class mmcorej.LongVector
 
capacity() - Method in class mmcorej.StrVector
 
capacity() - Method in class mmcorej.UnsignedVector
 
CDL - Class in mmcorej.org.json
This provides static methods to convert comma delimited text into a JSONArray, and to covert a JSONArray into comma delimited text.
CDL() - Constructor for class mmcorej.org.json.CDL
 
CharVector - Class in mmcorej
 
CharVector(long, boolean) - Constructor for class mmcorej.CharVector
 
CharVector() - Constructor for class mmcorej.CharVector
 
CharVector(long) - Constructor for class mmcorej.CharVector
 
CharVector_add(long, CharVector, char) - Static method in class mmcorej.MMCoreJJNI
 
CharVector_capacity(long, CharVector) - Static method in class mmcorej.MMCoreJJNI
 
CharVector_clear(long, CharVector) - Static method in class mmcorej.MMCoreJJNI
 
CharVector_get(long, CharVector, int) - Static method in class mmcorej.MMCoreJJNI
 
CharVector_isEmpty(long, CharVector) - Static method in class mmcorej.MMCoreJJNI
 
CharVector_reserve(long, CharVector, long) - Static method in class mmcorej.MMCoreJJNI
 
CharVector_set(long, CharVector, int, char) - Static method in class mmcorej.MMCoreJJNI
 
CharVector_size(long, CharVector) - Static method in class mmcorej.MMCoreJJNI
 
clear() - Method in class mmcorej.BooleanVector
 
clear() - Method in class mmcorej.CharVector
 
clear() - Method in class mmcorej.DoubleVector
 
clear() - Method in class mmcorej.LongVector
 
Clear() - Method in class mmcorej.Metadata
 
clear() - Method in class mmcorej.StrMap
 
clear() - Method in class mmcorej.StrVector
 
clear() - Method in class mmcorej.UnsignedVector
 
clearCircularBuffer() - Method in class mmcorej.CMMCore
Removes all images from the circular buffer.
clearROI() - Method in class mmcorej.CMMCore
Set the region of interest of the current camera to the full frame.
Clone() - Method in class mmcorej.MetadataArrayTag
 
Clone() - Method in class mmcorej.MetadataSingleTag
 
Clone() - Method in class mmcorej.MetadataTag
 
CMMCore - Class in mmcorej
 
CMMCore(long, boolean) - Constructor for class mmcorej.CMMCore
 
CMMCore() - Constructor for class mmcorej.CMMCore
Constructor.
CMMCore_addGalvoPolygonVertex(long, CMMCore, String, int, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_clearCircularBuffer(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_clearROI(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_debugLogEnabled(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_defineConfig__SWIG_0(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_defineConfig__SWIG_1(long, CMMCore, String, String, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_defineConfigGroup(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_definePixelSizeConfig__SWIG_0(long, CMMCore, String, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_definePixelSizeConfig__SWIG_1(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_defineStateLabel(long, CMMCore, String, int, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_deleteConfig__SWIG_0(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_deleteConfig__SWIG_1(long, CMMCore, String, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_deleteConfigGroup(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_deleteGalvoPolygons(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_deletePixelSizeConfig(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_detectDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_deviceBusy(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_deviceTypeBusy(long, CMMCore, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_displaySLMImage(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_enableContinuousFocus(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_enableDebugLog(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_enableFeature(String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_enableStderrLog(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_fullFocus(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAllowedPropertyValues(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAPIVersionInfo(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAutoFocusDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAutoFocusOffset(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAutoShutter(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAvailableConfigGroups(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAvailableConfigs(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAvailableDeviceDescriptions(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAvailableDevices(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAvailableDeviceTypes(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getAvailablePixelSizeConfigs(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getBufferFreeCapacity(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getBufferTotalCapacity(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getBytesPerPixel(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCameraChannelName(long, CMMCore, long) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCameraDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getChannelGroup(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCircularBufferMemoryFootprint(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getConfigData(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getConfigGroupState(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getConfigGroupStateFromCache(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getConfigState(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCoreErrorText(long, CMMCore, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCurrentConfig(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCurrentConfigFromCache(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCurrentFocusScore(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCurrentPixelSizeConfig__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getCurrentPixelSizeConfig__SWIG_1(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceAdapterNames(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceAdapterSearchPaths(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceDelayMs(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceDescription(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceInitializationState(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceLibrary(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceName(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDevicePropertyNames(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getDeviceType(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getExposure__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getExposure__SWIG_1(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getExposureSequenceMaxLength(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getFocusDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getFocusDirection(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getGalvoChannel(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getGalvoDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getGalvoPosition(long, CMMCore, String, double[], double[]) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getGalvoXMinimum(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getGalvoXRange(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getGalvoYMinimum(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getGalvoYRange(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getImage__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getImage__SWIG_1(long, CMMCore, long) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getImageBitDepth(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getImageBufferSize(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getImageHeight(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getImageProcessorDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getImageWidth(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getInstalledDeviceDescription(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getInstalledDevices(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getLastFocusScore(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getLastImage(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getLastImageMD__SWIG_0(long, CMMCore, long, long, long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getLastImageMD__SWIG_1(long, CMMCore, long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getLoadedDevices(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getLoadedDevicesOfType(long, CMMCore, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getLoadedPeripheralDevices(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getMagnificationFactor(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getMultiROI(long, CMMCore, long, UnsignedVector, long, UnsignedVector, long, UnsignedVector, long, UnsignedVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getNBeforeLastImageMD(long, CMMCore, long, long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getNumberOfCameraChannels(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getNumberOfComponents(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getNumberOfStates(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getParentLabel(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPixelSizeAffine__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPixelSizeAffine__SWIG_1(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPixelSizeAffineByID(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPixelSizeConfigData(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPixelSizeUm__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPixelSizeUm__SWIG_1(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPixelSizeUmByID(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPosition__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPosition__SWIG_1(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPrimaryLogFile(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getProperty(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPropertyFromCache(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPropertyLowerLimit(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPropertySequenceMaxLength(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPropertyType(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getPropertyUpperLimit(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getRemainingImageCount(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getROI__SWIG_0(long, CMMCore, int[], int[], int[], int[]) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getROI__SWIG_1(long, CMMCore, String, int[], int[], int[], int[]) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSerialPortAnswer(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getShutterDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getShutterOpen__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getShutterOpen__SWIG_1(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSLMBytesPerPixel(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSLMDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSLMExposure(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSLMHeight(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSLMNumberOfComponents(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSLMSequenceMaxLength(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSLMWidth(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getStageSequenceMaxLength(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getState(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getStateFromLabel(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getStateLabel(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getStateLabels(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSystemState(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getSystemStateCache(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getTimeoutMs(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getVersionInfo(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getXPosition__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getXPosition__SWIG_1(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getXYPosition__SWIG_0(long, CMMCore, String, double[], double[]) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getXYPosition__SWIG_1(long, CMMCore, double[], double[]) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getXYStageDevice(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getXYStageSequenceMaxLength(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getYPosition__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_getYPosition__SWIG_1(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_hasProperty(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_hasPropertyLimits(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_home(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_incrementalFocus(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_initializeAllDevices(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_initializeCircularBuffer(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_initializeDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isBufferOverflowed(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isConfigDefined(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isContinuousFocusDrive(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isContinuousFocusEnabled(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isContinuousFocusLocked(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isExposureSequenceable(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isFeatureEnabled(String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isGroupDefined(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isMultiROIEnabled(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isMultiROISupported(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isPixelSizeConfigDefined(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isPropertyPreInit(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isPropertyReadOnly(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isPropertySequenceable(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isSequenceRunning__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isSequenceRunning__SWIG_1(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isStageLinearSequenceable(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isStageSequenceable(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_isXYStageSequenceable(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadDevice(long, CMMCore, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadExposureSequence(long, CMMCore, String, long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadGalvoPolygons(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadPropertySequence(long, CMMCore, String, String, long, StrVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadSLMSequence(long, CMMCore, String, List<byte[]>) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadStageSequence(long, CMMCore, String, long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadSystemConfiguration(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadSystemState(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_loadXYStageSequence(long, CMMCore, String, long, DoubleVector, long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_logMessage__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_logMessage__SWIG_1(long, CMMCore, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_noop() - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_pointGalvoAndFire(long, CMMCore, String, double, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_popNextImage(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_popNextImageMD__SWIG_0(long, CMMCore, long, long, long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_popNextImageMD__SWIG_1(long, CMMCore, long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_prepareSequenceAcquisition(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_readFromSerialPort(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_registerCallback(long, CMMCore, long, MMEventCallback) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_renameConfig(long, CMMCore, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_renameConfigGroup(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_renamePixelSizeConfig(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_reset(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_runGalvoPolygons(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_runGalvoSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_saveSystemConfiguration(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_saveSystemState(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setAdapterOrigin__SWIG_0(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setAdapterOrigin__SWIG_1(long, CMMCore, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setAdapterOriginXY__SWIG_0(long, CMMCore, String, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setAdapterOriginXY__SWIG_1(long, CMMCore, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setAutoFocusDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setAutoFocusOffset(long, CMMCore, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setAutoShutter(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setCameraDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setChannelGroup(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setCircularBufferMemoryFootprint(long, CMMCore, long) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setConfig(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setDeviceAdapterSearchPaths(long, CMMCore, long, StrVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setDeviceDelayMs(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setExposure__SWIG_0(long, CMMCore, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setExposure__SWIG_1(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setFocusDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setFocusDirection(long, CMMCore, String, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setGalvoDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setGalvoIlluminationState(long, CMMCore, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setGalvoPolygonRepetitions(long, CMMCore, String, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setGalvoPosition(long, CMMCore, String, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setGalvoSpotInterval(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setImageProcessorDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setMultiROI(long, CMMCore, long, UnsignedVector, long, UnsignedVector, long, UnsignedVector, long, UnsignedVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOrigin__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOrigin__SWIG_1(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOriginX__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOriginX__SWIG_1(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOriginXY__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOriginXY__SWIG_1(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOriginY__SWIG_0(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setOriginY__SWIG_1(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setParentLabel(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setPixelSizeAffine(long, CMMCore, String, long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setPixelSizeConfig(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setPixelSizeUm(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setPosition__SWIG_0(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setPosition__SWIG_1(long, CMMCore, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setPrimaryLogFile__SWIG_0(long, CMMCore, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setPrimaryLogFile__SWIG_1(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setProperty__SWIG_0(long, CMMCore, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setProperty__SWIG_1(long, CMMCore, String, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setProperty__SWIG_2(long, CMMCore, String, String, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setProperty__SWIG_3(long, CMMCore, String, String, float) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setProperty__SWIG_4(long, CMMCore, String, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setRelativePosition__SWIG_0(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setRelativePosition__SWIG_1(long, CMMCore, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setRelativeXYPosition__SWIG_0(long, CMMCore, String, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setRelativeXYPosition__SWIG_1(long, CMMCore, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setROI__SWIG_0(long, CMMCore, int, int, int, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setROI__SWIG_1(long, CMMCore, String, int, int, int, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSerialPortCommand(long, CMMCore, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSerialProperties(long, CMMCore, String, String, String, String, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setShutterDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setShutterOpen__SWIG_0(long, CMMCore, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setShutterOpen__SWIG_1(long, CMMCore, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSLMDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSLMExposure(long, CMMCore, String, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSLMImage__SWIG_0(long, CMMCore, String, byte[]) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSLMImage__SWIG_1(long, CMMCore, String, int[]) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSLMPixelsTo__SWIG_0(long, CMMCore, String, short) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSLMPixelsTo__SWIG_1(long, CMMCore, String, short, short, short) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setStageLinearSequence(long, CMMCore, String, double, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setState(long, CMMCore, String, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setStateLabel(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setSystemState(long, CMMCore, long, Configuration) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setTimeoutMs(long, CMMCore, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setXYPosition__SWIG_0(long, CMMCore, String, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setXYPosition__SWIG_1(long, CMMCore, double, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_setXYStageDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_sleep(long, CMMCore, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_snapImage(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startContinuousSequenceAcquisition(long, CMMCore, double) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startExposureSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startPropertySequence(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startSecondaryLogFile__SWIG_0(long, CMMCore, String, boolean, boolean, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startSecondaryLogFile__SWIG_1(long, CMMCore, String, boolean, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startSecondaryLogFile__SWIG_2(long, CMMCore, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startSequenceAcquisition__SWIG_0(long, CMMCore, int, double, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startSequenceAcquisition__SWIG_1(long, CMMCore, String, int, double, boolean) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startSLMSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startStageSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_startXYStageSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stderrLogEnabled(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stop(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopExposureSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopPropertySequence(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopSecondaryLogFile(long, CMMCore, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopSequenceAcquisition__SWIG_0(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopSequenceAcquisition__SWIG_1(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopSLMSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopStageSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_stopXYStageSequence(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_supportsDeviceDetection(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_systemBusy(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_unloadAllDevices(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_unloadDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_unloadLibrary(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_updateCoreProperties(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_updateSystemStateCache(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_usesDeviceDelay(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_waitForConfig(long, CMMCore, String, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_waitForDevice(long, CMMCore, String) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_waitForDeviceType(long, CMMCore, int) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_waitForSystem(long, CMMCore) - Static method in class mmcorej.MMCoreJJNI
 
CMMCore_writeToSerialPort(long, CMMCore, String, long, CharVector) - Static method in class mmcorej.MMCoreJJNI
 
Configuration - Class in mmcorej
 
Configuration(long, boolean) - Constructor for class mmcorej.Configuration
 
Configuration() - Constructor for class mmcorej.Configuration
 
Configuration_addSetting(long, Configuration, long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_deleteSetting(long, Configuration, String, String) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_getSetting__SWIG_0(long, Configuration, long) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_getSetting__SWIG_1(long, Configuration, String, String) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_getVerbose(long, Configuration) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_isConfigurationIncluded(long, Configuration, long, Configuration) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_isPropertyIncluded(long, Configuration, String, String) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_isSettingIncluded(long, Configuration, long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
Configuration_size(long, Configuration) - Static method in class mmcorej.MMCoreJJNI
 
Cookie - Class in mmcorej.org.json
Convert a web browser cookie specification to a JSONObject and back.
Cookie() - Constructor for class mmcorej.org.json.Cookie
 
CookieList - Class in mmcorej.org.json
Convert a web browser cookie list string to a JSONObject and back.
CookieList() - Constructor for class mmcorej.org.json.CookieList
 
CoreDevice - Static variable in class mmcorej.DeviceType
 
CRLF - Static variable in class mmcorej.org.json.HTTP
Carriage return/line feed.

D

debugLogEnabled() - Method in class mmcorej.CMMCore
Indicates if logging of debug messages is enabled
defineConfig(String, String) - Method in class mmcorej.CMMCore
Defines a configuration.
defineConfig(String, String, String, String, String) - Method in class mmcorej.CMMCore
 
defineConfigGroup(String) - Method in class mmcorej.CMMCore
Creates an empty configuration group.
definePixelSizeConfig(String, String, String, String) - Method in class mmcorej.CMMCore
 
definePixelSizeConfig(String) - Method in class mmcorej.CMMCore
Defines an empty pixel size entry.
defineStateLabel(String, int, String) - Method in class mmcorej.CMMCore
 
dehexchar(char) - Static method in class mmcorej.org.json.JSONTokener
Get the hex value of a character (base16).
del(String) - Method in class mmcorej.StrMap
 
delete() - Method in class mmcorej.BooleanVector
 
delete() - Method in class mmcorej.CharVector
 
delete() - Method in class mmcorej.CMMCore
 
delete() - Method in class mmcorej.Configuration
 
delete() - Method in class mmcorej.DoubleVector
 
delete() - Method in class mmcorej.LongVector
 
delete() - Method in class mmcorej.Metadata
 
delete() - Method in class mmcorej.MetadataArrayTag
 
delete() - Method in class mmcorej.MetadataError
 
delete() - Method in class mmcorej.MetadataSingleTag
 
delete() - Method in class mmcorej.MetadataTag
 
delete() - Method in class mmcorej.MMEventCallback
 
delete() - Method in class mmcorej.pair_ss
 
delete() - Method in class mmcorej.PropertySetting
 
delete() - Method in class mmcorej.StrMap
 
delete() - Method in class mmcorej.StrVector
 
delete() - Method in class mmcorej.UnsignedVector
 
delete_BooleanVector(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_CharVector(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_CMMCore(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_Configuration(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_DoubleVector(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_LongVector(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_Metadata(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_MetadataArrayTag(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_MetadataError(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_MetadataSingleTag(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_MetadataTag(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_MMEventCallback(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_pair_ss(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_PropertySetting(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_StrMap(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_StrVector(long) - Static method in class mmcorej.MMCoreJJNI
 
delete_UnsignedVector(long) - Static method in class mmcorej.MMCoreJJNI
 
deleteConfig(String, String) - Method in class mmcorej.CMMCore
Deletes a configuration from a group.
deleteConfig(String, String, String, String) - Method in class mmcorej.CMMCore
 
deleteConfigGroup(String) - Method in class mmcorej.CMMCore
Deletes an entire configuration group.
deleteGalvoPolygons(String) - Method in class mmcorej.CMMCore
Remove all added polygons
deletePixelSizeConfig(String) - Method in class mmcorej.CMMCore
Deletes a pixel size configuration.
deleteSetting(String, String) - Method in class mmcorej.Configuration
 
detectDevice(String) - Method in class mmcorej.CMMCore
Tries to communicate to a device through a given serial port Used to automate discovery of correct serial port Also configures the serial port correctly
DEVICE_BUFFER_OVERFLOW - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_BUFFER_OVERFLOW_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_CAMERA_BUSY_ACQUIRING - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_CAMERA_BUSY_ACQUIRING_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_CAN_NOT_SET_PROPERTY - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_CAN_NOT_SET_PROPERTY_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_COMM_HUB_MISSING - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_COMM_HUB_MISSING_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_CORE_CHANNEL_PRESETS_FAILED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_CORE_CHANNEL_PRESETS_FAILED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_CORE_CONFIG_FAILED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_CORE_CONFIG_FAILED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_CORE_EXPOSURE_FAILED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_CORE_EXPOSURE_FAILED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_CORE_FOCUS_STAGE_UNDEF - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_CORE_FOCUS_STAGE_UNDEF_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_DUPLICATE_LABEL - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_DUPLICATE_LABEL_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_DUPLICATE_LIBRARY - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_DUPLICATE_LIBRARY_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_DUPLICATE_PROPERTY - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_DUPLICATE_PROPERTY_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_ERR - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_ERR_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_IMAGE_PARAMS_FAILED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_IMAGE_PARAMS_FAILED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_INCOMPATIBLE_IMAGE - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_INCOMPATIBLE_IMAGE_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_INTERNAL_INCONSISTENCY - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_INTERNAL_INCONSISTENCY_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_INVALID_INPUT_PARAM - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_INVALID_INPUT_PARAM_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_INVALID_PROPERTY - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_INVALID_PROPERTY_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_INVALID_PROPERTY_LIMTS - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_INVALID_PROPERTY_LIMTS_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_INVALID_PROPERTY_TYPE - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_INVALID_PROPERTY_TYPE_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_INVALID_PROPERTY_VALUE - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_INVALID_PROPERTY_VALUE_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_LOCALLY_DEFINED_ERROR - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_LOCALLY_DEFINED_ERROR_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_NATIVE_MODULE_FAILED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_NATIVE_MODULE_FAILED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_NO_CALLBACK_REGISTERED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_NO_CALLBACK_REGISTERED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_NO_PROPERTY_DATA - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_NO_PROPERTY_DATA_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_NONEXISTENT_CHANNEL - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_NONEXISTENT_CHANNEL_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_NOT_CONNECTED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_NOT_CONNECTED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_NOT_SUPPORTED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_NOT_SUPPORTED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_NOT_YET_IMPLEMENTED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_NOT_YET_IMPLEMENTED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_OK - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_OK_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_OUT_OF_MEMORY - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_OUT_OF_MEMORY_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_PROPERTY_NOT_SEQUENCEABLE - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_PROPERTY_NOT_SEQUENCEABLE_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_SELF_REFERENCE - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_SELF_REFERENCE_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_SEQUENCE_TOO_LARGE - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_SEQUENCE_TOO_LARGE_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_SERIAL_BUFFER_OVERRUN - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_SERIAL_BUFFER_OVERRUN_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_SERIAL_COMMAND_FAILED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_SERIAL_COMMAND_FAILED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_SERIAL_INVALID_RESPONSE - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_SERIAL_INVALID_RESPONSE_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_SERIAL_TIMEOUT - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_SERIAL_TIMEOUT_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_SNAP_IMAGE_FAILED - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_SNAP_IMAGE_FAILED_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_UNKNOWN_LABEL - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_UNKNOWN_LABEL_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_UNKNOWN_POSITION - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_UNKNOWN_POSITION_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_UNSUPPORTED_COMMAND - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_UNSUPPORTED_COMMAND_get() - Static method in class mmcorej.MMCoreJJNI
 
DEVICE_UNSUPPORTED_DATA_FORMAT - Static variable in interface mmcorej.MMCoreJConstants
 
DEVICE_UNSUPPORTED_DATA_FORMAT_get() - Static method in class mmcorej.MMCoreJJNI
 
deviceBusy(String) - Method in class mmcorej.CMMCore
Checks the busy status of the specific device.
DeviceDetectionStatus - Class in mmcorej
 
DeviceInitializationState - Class in mmcorej
 
DeviceNotification - Class in mmcorej
 
DeviceType - Class in mmcorej
 
deviceTypeBusy(DeviceType) - Method in class mmcorej.CMMCore
Checks the busy status for all devices of the specific type.
displaySLMImage(String) - Method in class mmcorej.CMMCore
Display the waiting image on the SLM.
Done - Static variable in class mmcorej.DeviceNotification
 
DoubleVector - Class in mmcorej
 
DoubleVector(long, boolean) - Constructor for class mmcorej.DoubleVector
 
DoubleVector() - Constructor for class mmcorej.DoubleVector
 
DoubleVector(long) - Constructor for class mmcorej.DoubleVector
 
DoubleVector_add(long, DoubleVector, double) - Static method in class mmcorej.MMCoreJJNI
 
DoubleVector_capacity(long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
DoubleVector_clear(long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
DoubleVector_get(long, DoubleVector, int) - Static method in class mmcorej.MMCoreJJNI
 
DoubleVector_isEmpty(long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
DoubleVector_reserve(long, DoubleVector, long) - Static method in class mmcorej.MMCoreJJNI
 
DoubleVector_set(long, DoubleVector, int, double) - Static method in class mmcorej.MMCoreJJNI
 
DoubleVector_size(long, DoubleVector) - Static method in class mmcorej.MMCoreJJNI
 
Dump() - Method in class mmcorej.Metadata
 

E

empty() - Method in class mmcorej.StrMap
 
enableContinuousFocus(boolean) - Method in class mmcorej.CMMCore
Enables or disables the operation of the continuous focusing hardware device.
enableDebugLog(boolean) - Method in class mmcorej.CMMCore
Enable or disable logging of debug messages.
enableFeature(String, boolean) - Static method in class mmcorej.CMMCore
Enable or disable the given Core feature.
enableStderrLog(boolean) - Method in class mmcorej.CMMCore
Enables or disables log message display on the standard console.
endArray() - Method in class mmcorej.org.json.JSONWriter
End an array.
endObject() - Method in class mmcorej.org.json.JSONWriter
End an object.
entity - Static variable in class mmcorej.org.json.XMLTokener
The table of entity values.
EQ - Static variable in class mmcorej.org.json.XML
The Character '='.
escape(String) - Static method in class mmcorej.org.json.Cookie
Produce a copy of a string in which the characters '+', '%', '=', ';' and control characters are replaced with "%hh".
escape(String) - Static method in class mmcorej.org.json.XML
Replace special characters with XML escapes:

F

finalize() - Method in class mmcorej.BooleanVector
 
finalize() - Method in class mmcorej.CharVector
 
finalize() - Method in class mmcorej.CMMCore
 
finalize() - Method in class mmcorej.Configuration
 
finalize() - Method in class mmcorej.DoubleVector
 
finalize() - Method in class mmcorej.LongVector
 
finalize() - Method in class mmcorej.Metadata
 
finalize() - Method in class mmcorej.MetadataArrayTag
 
finalize() - Method in class mmcorej.MetadataError
 
finalize() - Method in class mmcorej.MetadataSingleTag
 
finalize() - Method in class mmcorej.MetadataTag
 
finalize() - Method in class mmcorej.MMEventCallback
 
finalize() - Method in class mmcorej.pair_ss
 
finalize() - Method in class mmcorej.PropertySetting
 
finalize() - Method in class mmcorej.StrMap
 
finalize() - Method in class mmcorej.StrVector
 
finalize() - Method in class mmcorej.UnsignedVector
 
Float - Static variable in class mmcorej.PropertyType
 
FocusDirection - Class in mmcorej
 
FocusDirectionAwayFromSample - Static variable in class mmcorej.FocusDirection
 
FocusDirectionTowardSample - Static variable in class mmcorej.FocusDirection
 
FocusDirectionUnknown - Static variable in class mmcorej.FocusDirection
 
fullFocus() - Method in class mmcorej.CMMCore
Performs focus acquisition and lock for the one-shot focusing device.

G

g_CFGCommand_ConfigGroup_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_ConfigPixelSize_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_Configuration_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_Delay_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_Device_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_Equipment_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_FocusDirection_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_ImageSynchro_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_Label_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_ParentID_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_PixelSize_um_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_PixelSizeAffine_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGCommand_Property_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGGroup_PixelSizeUm_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGGroup_System_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGGroup_System_Shutdown_get() - Static method in class mmcorej.MMCoreJJNI
 
g_CFGGroup_System_Startup_get() - Static method in class mmcorej.MMCoreJJNI
 
g_FieldDelimiters_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_ActualExposure_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_ActualInterval_ms_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_AnswerTimeout_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_BaudRate_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Binning_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CameraChannelIndex_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CameraChannelName_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CameraID_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CameraName_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CCDTemperature_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CCDTemperatureSetPoint_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Channel_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Closed_Position_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_ColorMode_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreAutoFocus_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreAutoShutter_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreCamera_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreChannelGroup_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreDevice_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreFocus_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreGalvo_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreImageProcessor_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreInitialize_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreShutter_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreSLM_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreTimeoutMs_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_CoreXYStage_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_DataBits_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Delay_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_DelayBetweenCharsMs_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Description_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Elapsed_Time_ms_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_EMGain_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Exposure_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Gain_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Handshaking_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_HubID_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Interval_ms_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Label_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Meatdata_Exposure_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_CameraLabel_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_Exposure_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_Height_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_ImageNumber_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_ROI_X_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_ROI_Y_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_Score_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_TimeInCore_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Metadata_Width_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Name_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Offset_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Parity_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_PixelType_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_PixelType_GRAY16_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_PixelType_GRAY32_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_PixelType_GRAY8_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_PixelType_RGB32_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_PixelType_RGB64_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_PixelType_Unknown_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Port_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Position_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_ReadoutMode_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_ReadoutTime_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Speed_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_State_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_StopBits_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Transpose_Correction_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Transpose_MirrorX_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Transpose_MirrorY_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Transpose_SwapXY_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Type_get() - Static method in class mmcorej.MMCoreJJNI
 
g_Keyword_Version_get() - Static method in class mmcorej.MMCoreJJNI
 
GalvoDevice - Static variable in class mmcorej.DeviceType
 
generateKey(String, String) - Static method in class mmcorej.PropertySetting
 
GenericDevice - Static variable in class mmcorej.DeviceType
 
get(int) - Method in class mmcorej.BooleanVector
 
get(int) - Method in class mmcorej.CharVector
 
get(int) - Method in class mmcorej.DoubleVector
 
get(int) - Method in class mmcorej.LongVector
 
get(int) - Method in class mmcorej.org.json.JSONArray
Get the object value associated with an index.
get(String) - Method in class mmcorej.org.json.JSONObject
Get the value object associated with a key.
get(String) - Method in class mmcorej.StrMap
 
get(int) - Method in class mmcorej.StrVector
 
get(int) - Method in class mmcorej.UnsignedVector
 
get_DATABITS_5() - Static method in class mmcorej.MMCoreJ
 
get_DATABITS_6() - Static method in class mmcorej.MMCoreJ
 
get_DATABITS_7() - Static method in class mmcorej.MMCoreJ
 
get_DATABITS_8() - Static method in class mmcorej.MMCoreJ
 
get_FLOWCONTROL_NONE() - Static method in class mmcorej.MMCoreJ
 
get_FLOWCONTROL_RTSCTS_IN() - Static method in class mmcorej.MMCoreJ
 
get_FLOWCONTROL_RTSCTS_OUT() - Static method in class mmcorej.MMCoreJ
 
get_FLOWCONTROL_XONXOFF_IN() - Static method in class mmcorej.MMCoreJ
 
get_FLOWCONTROL_XONXOFF_OUT() - Static method in class mmcorej.MMCoreJ
 
get_PARITY_EVEN() - Static method in class mmcorej.MMCoreJ
 
get_PARITY_MARK() - Static method in class mmcorej.MMCoreJ
 
get_PARITY_NONE() - Static method in class mmcorej.MMCoreJ
 
get_PARITY_ODD() - Static method in class mmcorej.MMCoreJ
 
get_PARITY_SPACE() - Static method in class mmcorej.MMCoreJ
 
get_STOPBITS_1() - Static method in class mmcorej.MMCoreJ
 
get_STOPBITS_1_5() - Static method in class mmcorej.MMCoreJ
 
get_STOPBITS_2() - Static method in class mmcorej.MMCoreJ
 
getAllowedPropertyValues(String, String) - Method in class mmcorej.CMMCore
Returns all valid values for the specified property.
getAPIVersionInfo() - Method in class mmcorej.CMMCore
Returns the module and device interface versions.
GetArrayTag(String) - Method in class mmcorej.Metadata
 
getAutoFocusDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected auto-focus device.
getAutoFocusOffset() - Method in class mmcorej.CMMCore
Measures offset for the one-shot focusing device.
getAutoShutter() - Method in class mmcorej.CMMCore
Returns the current setting of the auto-shutter option.
getAvailableConfigGroups() - Method in class mmcorej.CMMCore
Returns the names of all defined configuration groups
getAvailableConfigs(String) - Method in class mmcorej.CMMCore
Returns all defined configuration names in a given group
getAvailableDeviceDescriptions(String) - Method in class mmcorej.CMMCore
Get descriptions for available devices from the specified library.
getAvailableDevices(String) - Method in class mmcorej.CMMCore
Get available devices from the specified device library.
getAvailableDeviceTypes(String) - Method in class mmcorej.CMMCore
Get type information for available devices from the specified library.
getAvailablePixelSizeConfigs() - Method in class mmcorej.CMMCore
Returns all defined resolution preset names
getBoolean(int) - Method in class mmcorej.org.json.JSONArray
Get the boolean value associated with an index.
getBoolean(String) - Method in class mmcorej.org.json.JSONObject
Get the boolean value associated with a key.
getBufferFreeCapacity() - Method in class mmcorej.CMMCore
Returns the number of images that can be added to the buffer without overflowing
getBufferTotalCapacity() - Method in class mmcorej.CMMCore
Returns the total number of images that can be stored in the buffer
getBytesPerPixel() - Method in class mmcorej.CMMCore
How many bytes for each pixel.
getCameraChannelName(long) - Method in class mmcorej.CMMCore
Returns the name of the requested channel as known by the default camera
getCameraDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected camera device.
getCause() - Method in exception mmcorej.org.json.JSONException
 
getChannelGroup() - Method in class mmcorej.CMMCore
Returns the group determining the channel selection.
getCircularBufferMemoryFootprint() - Method in class mmcorej.CMMCore
Returns the size of the Circular Buffer in MB
getConfigData(String, String) - Method in class mmcorej.CMMCore
Returns the configuration object for a given group and name.
getConfigGroupState(String) - Method in class mmcorej.CMMCore
Returns the partial state of the system, only for the devices included in the specified group.
getConfigGroupStateFromCache(String) - Method in class mmcorej.CMMCore
Returns the partial state of the system cache, only for the devices included in the specified group.
getConfigState(String, String) - Method in class mmcorej.CMMCore
Returns a partial state of the system, only for devices included in the specified configuration.
getCoreErrorText(int) - Method in class mmcorej.CMMCore
Returns a pre-defined error test with the given error code
getCPtr(BooleanVector) - Static method in class mmcorej.BooleanVector
 
getCPtr(CharVector) - Static method in class mmcorej.CharVector
 
getCPtr(CMMCore) - Static method in class mmcorej.CMMCore
 
getCPtr(Configuration) - Static method in class mmcorej.Configuration
 
getCPtr(DoubleVector) - Static method in class mmcorej.DoubleVector
 
getCPtr(LongVector) - Static method in class mmcorej.LongVector
 
getCPtr(Metadata) - Static method in class mmcorej.Metadata
 
getCPtr(MetadataArrayTag) - Static method in class mmcorej.MetadataArrayTag
 
getCPtr(MetadataError) - Static method in class mmcorej.MetadataError
 
getCPtr(MetadataSingleTag) - Static method in class mmcorej.MetadataSingleTag
 
getCPtr(MetadataTag) - Static method in class mmcorej.MetadataTag
 
getCPtr(MMEventCallback) - Static method in class mmcorej.MMEventCallback
 
getCPtr(pair_ss) - Static method in class mmcorej.pair_ss
 
getCPtr(PropertySetting) - Static method in class mmcorej.PropertySetting
 
getCPtr(StrMap) - Static method in class mmcorej.StrMap
 
getCPtr(StrVector) - Static method in class mmcorej.StrVector
 
getCPtr(SWIGTYPE_p_std__istringstream) - Static method in class mmcorej.SWIGTYPE_p_std__istringstream
 
getCPtr(UnsignedVector) - Static method in class mmcorej.UnsignedVector
 
getCurrentConfig(String) - Method in class mmcorej.CMMCore
Returns the current configuration for a given group.
getCurrentConfigFromCache(String) - Method in class mmcorej.CMMCore
Returns the configuration for a given group based on the data in the cache.
getCurrentFocusScore() - Method in class mmcorej.CMMCore
Returns the focus score from the default focusing device measured at the current Z position.
getCurrentPixelSizeConfig() - Method in class mmcorej.CMMCore
Get the current pixel configuration name
getCurrentPixelSizeConfig(boolean) - Method in class mmcorej.CMMCore
Get the current pixel configuration name
GetDevice() - Method in class mmcorej.MetadataTag
 
getDeviceAdapterNames() - Method in class mmcorej.CMMCore
Return the names of discoverable device adapters.
getDeviceAdapterSearchPaths() - Method in class mmcorej.CMMCore
Return the current device adapter search paths.
getDeviceDelayMs(String) - Method in class mmcorej.CMMCore
Reports action delay in milliseconds for the specific device.
getDeviceDescription(String) - Method in class mmcorej.CMMCore
Returns description text for a given device label.
getDeviceInitializationState(String) - Method in class mmcorej.CMMCore
Queries the initialization state of the given device.
getDeviceLabel() - Method in class mmcorej.PropertySetting
 
getDeviceLibrary(String) - Method in class mmcorej.CMMCore
Returns device library (aka module, device adapter) name.
getDeviceName(String) - Method in class mmcorej.CMMCore
Returns device name for a given device label.
getDevicePropertyNames(String) - Method in class mmcorej.CMMCore
Returns all property names supported by the device.
getDeviceType(String) - Method in class mmcorej.CMMCore
Returns device type.
getDouble(int) - Method in class mmcorej.org.json.JSONArray
Get the double value associated with an index.
getDouble(String) - Method in class mmcorej.org.json.JSONObject
Get the double value associated with a key.
getExposure() - Method in class mmcorej.CMMCore
Returns the current exposure setting of the camera in milliseconds.
getExposure(String) - Method in class mmcorej.CMMCore
Returns the current exposure setting of the specified camera in milliseconds.
getExposureSequenceMaxLength(String) - Method in class mmcorej.CMMCore
Gets the maximum length of a camera's exposure sequence.
getFirst() - Method in class mmcorej.pair_ss
 
getFocusDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected focus device.
getFocusDirection(String) - Method in class mmcorej.CMMCore
Get the focus direction of a stage.
getG_CFGCommand_ConfigGroup() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_ConfigPixelSize() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_Configuration() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_Delay() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_Device() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_Equipment() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_FocusDirection() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_ImageSynchro() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_Label() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_ParentID() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_PixelSize_um() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_PixelSizeAffine() - Static method in class mmcorej.MMCoreJ
 
getG_CFGCommand_Property() - Static method in class mmcorej.MMCoreJ
 
getG_CFGGroup_PixelSizeUm() - Static method in class mmcorej.MMCoreJ
 
getG_CFGGroup_System() - Static method in class mmcorej.MMCoreJ
 
getG_CFGGroup_System_Shutdown() - Static method in class mmcorej.MMCoreJ
 
getG_CFGGroup_System_Startup() - Static method in class mmcorej.MMCoreJ
 
getG_FieldDelimiters() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_ActualExposure() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_ActualInterval_ms() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_AnswerTimeout() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_BaudRate() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Binning() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CameraChannelIndex() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CameraChannelName() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CameraID() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CameraName() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CCDTemperature() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CCDTemperatureSetPoint() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Channel() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Closed_Position() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_ColorMode() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreAutoFocus() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreAutoShutter() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreCamera() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreChannelGroup() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreDevice() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreFocus() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreGalvo() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreImageProcessor() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreInitialize() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreShutter() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreSLM() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreTimeoutMs() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_CoreXYStage() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_DataBits() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Delay() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_DelayBetweenCharsMs() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Description() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Elapsed_Time_ms() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_EMGain() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Exposure() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Gain() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Handshaking() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_HubID() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Interval_ms() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Label() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Meatdata_Exposure() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_CameraLabel() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_Exposure() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_Height() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_ImageNumber() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_ROI_X() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_ROI_Y() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_Score() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_TimeInCore() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Metadata_Width() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Name() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Offset() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Parity() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_PixelType() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_PixelType_GRAY16() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_PixelType_GRAY32() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_PixelType_GRAY8() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_PixelType_RGB32() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_PixelType_RGB64() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_PixelType_Unknown() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Port() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Position() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_ReadoutMode() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_ReadoutTime() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Speed() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_State() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_StopBits() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Transpose_Correction() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Transpose_MirrorX() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Transpose_MirrorY() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Transpose_SwapXY() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Type() - Static method in class mmcorej.MMCoreJ
 
getG_Keyword_Version() - Static method in class mmcorej.MMCoreJ
 
getGalvoChannel(String) - Method in class mmcorej.CMMCore
Get the name of the active galvo channel (for a multi-laser galvo device).
getGalvoDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected Galvo device.
getGalvoPosition(String) - Method in class mmcorej.CMMCore
 
getGalvoPosition(String, double[], double[]) - Method in class mmcorej.CMMCore
 
getGalvoXMinimum(String) - Method in class mmcorej.CMMCore
Get the Galvo x minimum
getGalvoXRange(String) - Method in class mmcorej.CMMCore
Get the Galvo x range
getGalvoYMinimum(String) - Method in class mmcorej.CMMCore
Get the Galvo y minimum
getGalvoYRange(String) - Method in class mmcorej.CMMCore
Get the Galvo y range
getImage() - Method in class mmcorej.CMMCore
Exposes the internal image buffer.
getImage(long) - Method in class mmcorej.CMMCore
Returns the internal image buffer for a given Camera Channel
getImageBitDepth() - Method in class mmcorej.CMMCore
How many bits of dynamic range are to be expected from the camera.
getImageBufferSize() - Method in class mmcorej.CMMCore
Returns the size of the internal image buffer.
getImageHeight() - Method in class mmcorej.CMMCore
Vertical dimension of the image buffer in pixels.
getImageProcessorDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected image processor device.
getImageWidth() - Method in class mmcorej.CMMCore
Horizontal dimension of the image buffer in pixels.
getIncludeSystemStateCache() - Method in class mmcorej.CMMCore
 
getInstalledDeviceDescription(String, String) - Method in class mmcorej.CMMCore
 
getInstalledDevices(String) - Method in class mmcorej.CMMCore
Performs auto-detection and loading of child devices that are attached to a Hub device.
getInt(int) - Method in class mmcorej.org.json.JSONArray
Get the int value associated with an index.
getInt(String) - Method in class mmcorej.org.json.JSONObject
Get the int value associated with a key.
getJSONArray(int) - Method in class mmcorej.org.json.JSONArray
Get the JSONArray associated with an index.
getJSONArray(String) - Method in class mmcorej.org.json.JSONObject
Get the JSONArray value associated with a key.
getJSONObject(int) - Method in class mmcorej.org.json.JSONArray
Get the JSONObject associated with an index.
getJSONObject(String) - Method in class mmcorej.org.json.JSONObject
Get the JSONObject value associated with a key.
getKey() - Method in class mmcorej.PropertySetting
 
GetKeys() - Method in class mmcorej.Metadata
 
getLastFocusScore() - Method in class mmcorej.CMMCore
Returns the latest focus score from the focusing device.
getLastImage() - Method in class mmcorej.CMMCore
Gets the last image from the circular buffer.
getLastImageMD(long, long, Metadata) - Method in class mmcorej.CMMCore
 
getLastImageMD(Metadata) - Method in class mmcorej.CMMCore
Returns a pointer to the pixels of the image that was last inserted into the circular buffer Also provides all metadata associated with that image
getLastTaggedImage(int) - Method in class mmcorej.CMMCore
 
getLastTaggedImage() - Method in class mmcorej.CMMCore
 
getLoadedDevices() - Method in class mmcorej.CMMCore
Returns an array of labels for currently loaded devices.
getLoadedDevicesOfType(DeviceType) - Method in class mmcorej.CMMCore
Returns an array of labels for currently loaded devices of specific type.
getLoadedPeripheralDevices(String) - Method in class mmcorej.CMMCore
 
getLong(int) - Method in class mmcorej.org.json.JSONArray
Get the long value associated with an index.
getLong(String) - Method in class mmcorej.org.json.JSONObject
Get the long value associated with a key.
getMagnificationFactor() - Method in class mmcorej.CMMCore
Returns the product of all Magnifiers in the system or 1.0 when none is found This is used internally by GetPixelSizeUm
getMaxStrLength() - Static method in class mmcorej.MMCoreJ
 
getMsg() - Method in class mmcorej.MetadataError
 
getMultiROI() - Method in class mmcorej.CMMCore
 
getMultiROI(UnsignedVector, UnsignedVector, UnsignedVector, UnsignedVector) - Method in class mmcorej.CMMCore
 
GetName() - Method in class mmcorej.MetadataTag
 
getNBeforeLastImageMD(long, Metadata) - Method in class mmcorej.CMMCore
Returns a pointer to the pixels of the image that was inserted n images ago Also provides all metadata associated with that image
getNBeforeLastTaggedImage(long) - Method in class mmcorej.CMMCore
 
getNumberOfCameraChannels() - Method in class mmcorej.CMMCore
Returns the number of simultaneous channels the default camera is returning.
getNumberOfComponents() - Method in class mmcorej.CMMCore
Returns the number of components the default camera is returning.
getNumberOfStates(String) - Method in class mmcorej.CMMCore
Returns the total number of available positions (states).
getParentLabel(String) - Method in class mmcorej.CMMCore
Returns parent device.
getPixelSizeAffine() - Method in class mmcorej.CMMCore
Returns the current Affine Transform to related camera pixels with stage movement..
getPixelSizeAffine(boolean) - Method in class mmcorej.CMMCore
Returns the current Affine Transform to related camera pixels with stage movement..
getPixelSizeAffineAsString() - Method in class mmcorej.CMMCore
Convenience function.
getPixelSizeAffineByID(String) - Method in class mmcorej.CMMCore
Returns the Affine Transform to related camera pixels with stage movement for the requested pixel size group The raw affine transform without correction for binning and magnification will be returned.
getPixelSizeConfigData(String) - Method in class mmcorej.CMMCore
Returns the configuration object for a give pixel size preset.
getPixelSizeUm() - Method in class mmcorej.CMMCore
Returns the current pixel size in microns.
getPixelSizeUm(boolean) - Method in class mmcorej.CMMCore
Returns the current pixel size in microns.
getPixelSizeUmByID(String) - Method in class mmcorej.CMMCore
Returns the pixel size in um for the requested pixel size group
getPosition(String) - Method in class mmcorej.CMMCore
Returns the current position of the stage in microns.
getPosition() - Method in class mmcorej.CMMCore
Returns the current position of the stage in microns.
getPrimaryLogFile() - Method in class mmcorej.CMMCore
Return the name of the primary Core log file.
getProperty(String, String) - Method in class mmcorej.CMMCore
Returns the property value for the specified device.
getPropertyFromCache(String, String) - Method in class mmcorej.CMMCore
Returns the cached property value for the specified device.
getPropertyLowerLimit(String, String) - Method in class mmcorej.CMMCore
Returns the property lower limit value, if the property has limits - 0 otherwise.
getPropertyName() - Method in class mmcorej.PropertySetting
 
getPropertySequenceMaxLength(String, String) - Method in class mmcorej.CMMCore
Queries device property for the maximum number of events that can be put in a sequence
getPropertyType(String, String) - Method in class mmcorej.CMMCore
Returns the intrinsic property type.
getPropertyUpperLimit(String, String) - Method in class mmcorej.CMMCore
Returns the property upper limit value, if the property has limits - 0 otherwise.
getPropertyValue() - Method in class mmcorej.PropertySetting
 
GetQualifiedName() - Method in class mmcorej.MetadataTag
 
getReadOnly() - Method in class mmcorej.PropertySetting
 
getRemainingImageCount() - Method in class mmcorej.CMMCore
Returns number ofimages available in the Circular Buffer
getROI() - Method in class mmcorej.CMMCore
 
getROI(String) - Method in class mmcorej.CMMCore
 
getROI(int[], int[], int[], int[]) - Method in class mmcorej.CMMCore
 
getROI(String, int[], int[], int[], int[]) - Method in class mmcorej.CMMCore
 
getSecond() - Method in class mmcorej.pair_ss
 
getSerialPortAnswer(String, String) - Method in class mmcorej.CMMCore
Continuously read from the serial port until the terminating sequence is encountered.
getSetting(long) - Method in class mmcorej.Configuration
 
getSetting(String, String) - Method in class mmcorej.Configuration
 
getShutterDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected shutter device.
getShutterOpen() - Method in class mmcorej.CMMCore
Returns the state of the currently selected (default) shutter.
getShutterOpen(String) - Method in class mmcorej.CMMCore
Returns the state of the specified shutter.
GetSingleTag(String) - Method in class mmcorej.Metadata
 
GetSize() - Method in class mmcorej.MetadataArrayTag
 
getSLMBytesPerPixel(String) - Method in class mmcorej.CMMCore
Returns the number of bytes per SLM pixel
getSLMDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected SLM device.
getSLMExposure(String) - Method in class mmcorej.CMMCore
Returns the exposure time that will be used by the SLM for illumination
getSLMHeight(String) - Method in class mmcorej.CMMCore
Returns the height (in "pixels") of the SLM
getSLMNumberOfComponents(String) - Method in class mmcorej.CMMCore
Returns the number of components (usually these depict colors) of the SLM For instance, an RGB projector will return 3, but a grey scale SLM returns 1
getSLMSequenceMaxLength(String) - Method in class mmcorej.CMMCore
For SLMs that support sequences, returns the maximum length of the sequence that can be uploaded to the device
getSLMWidth(String) - Method in class mmcorej.CMMCore
Returns the width (in "pixels") of the SLM
getStageSequenceMaxLength(String) - Method in class mmcorej.CMMCore
Gets the maximum length of a stage's position sequence.
getState(String) - Method in class mmcorej.CMMCore
Returns the current state (position) on the specific device.
getStateFromLabel(String, String) - Method in class mmcorej.CMMCore
Obtain the state for a given label.
getStateLabel(String) - Method in class mmcorej.CMMCore
Returns the current state as the label (string).
getStateLabels(String) - Method in class mmcorej.CMMCore
Return labels for all states
getString(int) - Method in class mmcorej.org.json.JSONArray
Get the string associated with an index.
getString(String) - Method in class mmcorej.org.json.JSONObject
Get the string associated with a key.
getSystemState() - Method in class mmcorej.CMMCore
Returns the entire system state, i.e.
getSystemStateCache() - Method in class mmcorej.CMMCore
Returns the entire system state, i.e.
getTaggedImage(int) - Method in class mmcorej.CMMCore
 
getTaggedImage() - Method in class mmcorej.CMMCore
 
getTimeoutMs() - Method in class mmcorej.CMMCore
 
GetValue(long) - Method in class mmcorej.MetadataArrayTag
 
GetValue() - Method in class mmcorej.MetadataSingleTag
 
getVerbose() - Method in class mmcorej.Configuration
 
getVerbose() - Method in class mmcorej.PropertySetting
 
getVersionInfo() - Method in class mmcorej.CMMCore
Displays core version.
getXPosition(String) - Method in class mmcorej.CMMCore
Obtains the current position of the X axis of the XY stage in microns.
getXPosition() - Method in class mmcorej.CMMCore
Obtains the current position of the X axis of the XY stage in microns.
getXYPosition(String, double[], double[]) - Method in class mmcorej.CMMCore
 
getXYPosition(double[], double[]) - Method in class mmcorej.CMMCore
Obtains the current position of the XY stage in microns.
getXYStageDevice() - Method in class mmcorej.CMMCore
Returns the label of the currently selected XYStage device.
getXYStagePosition(String) - Method in class mmcorej.CMMCore
 
getXYStagePosition() - Method in class mmcorej.CMMCore
Convenience function: returns the current XY position of the current XY stage device as a Point2D.Double.
getXYStageSequenceMaxLength(String) - Method in class mmcorej.CMMCore
Gets the maximum length of an XY stage's position sequence.
getYPosition(String) - Method in class mmcorej.CMMCore
Obtains the current position of the Y axis of the XY stage in microns.
getYPosition() - Method in class mmcorej.CMMCore
Obtains the current position of the Y axis of the XY stage in microns.
GT - Static variable in class mmcorej.org.json.XML
The Character '>'.

H

has(String) - Method in class mmcorej.org.json.JSONObject
Determine if the JSONObject contains a specific key.
has_key(String) - Method in class mmcorej.StrMap
 
hasProperty(String, String) - Method in class mmcorej.CMMCore
Checks if device has a property with a specified name.
hasPropertyLimits(String, String) - Method in class mmcorej.CMMCore
Queries device if the specific property has limits.
HasTag(String) - Method in class mmcorej.Metadata
 
HIDPort - Static variable in class mmcorej.PortType
 
home(String) - Method in class mmcorej.CMMCore
Perform a hardware homing operation for an XY or focus/Z stage.
HTTP - Class in mmcorej.org.json
Convert an HTTP header to a JSONObject and back.
HTTP() - Constructor for class mmcorej.org.json.HTTP
 
HTTPTokener - Class in mmcorej.org.json
The HTTPTokener extends the JSONTokener to provide additional methods for the parsing of HTTP headers.
HTTPTokener(String) - Constructor for class mmcorej.org.json.HTTPTokener
Construct an XMLTokener from a string.
HubDevice - Static variable in class mmcorej.DeviceType
 

I

ImageProcessorDevice - Static variable in class mmcorej.DeviceType
 
incrementalFocus() - Method in class mmcorej.CMMCore
Performs incremental focus for the one-shot focusing device.
InitializationFailed - Static variable in class mmcorej.DeviceInitializationState
 
initializeAllDevices() - Method in class mmcorej.CMMCore
Calls Initialize() method for each loaded device.
initializeCircularBuffer() - Method in class mmcorej.CMMCore
Initialize circular buffer based on the current camera settings.
initializeDevice(String) - Method in class mmcorej.CMMCore
Initializes specific device.
InitializedSuccessfully - Static variable in class mmcorej.DeviceInitializationState
 
Integer - Static variable in class mmcorej.PropertyType
 
InvalidPort - Static variable in class mmcorej.PortType
 
isBufferOverflowed() - Method in class mmcorej.CMMCore
Indicates whether the circular buffer is overflowed
isConfigDefined(String, String) - Method in class mmcorej.CMMCore
Checks if the configuration already exists within a group.
isConfigurationIncluded(Configuration) - Method in class mmcorej.Configuration
 
isContinuousFocusDrive(String) - Method in class mmcorej.CMMCore
Check if a stage has continuous focusing capability (positions can be set while continuous focus runs).
isContinuousFocusEnabled() - Method in class mmcorej.CMMCore
Checks if the continuous focusing hardware device is ON or OFF.
isContinuousFocusLocked() - Method in class mmcorej.CMMCore
Returns the lock-in status of the continuous focusing device.
isEmpty() - Method in class mmcorej.BooleanVector
 
isEmpty() - Method in class mmcorej.CharVector
 
isEmpty() - Method in class mmcorej.DoubleVector
 
isEmpty() - Method in class mmcorej.LongVector
 
isEmpty() - Method in class mmcorej.StrVector
 
isEmpty() - Method in class mmcorej.UnsignedVector
 
isEqualTo(PropertySetting) - Method in class mmcorej.PropertySetting
 
isExposureSequenceable(String) - Method in class mmcorej.CMMCore
Queries camera if exposure can be used in a sequence
isFeatureEnabled(String) - Static method in class mmcorej.CMMCore
Return whether the given Core feature is currently enabled.
isGroupDefined(String) - Method in class mmcorej.CMMCore
Checks if the group already exists.
isMultiROIEnabled() - Method in class mmcorej.CMMCore
Queries the camera to determine if multiple ROIs are currently set.
isMultiROISupported() - Method in class mmcorej.CMMCore
Queries the camera to determine if it supports multiple ROIs.
isNull(int) - Method in class mmcorej.org.json.JSONArray
Determine if the value is null.
isNull(String) - Method in class mmcorej.org.json.JSONObject
Determine if the value associated with the key is null or if there is no value.
isPixelSizeConfigDefined(String) - Method in class mmcorej.CMMCore
Checks if the Pixel Size Resolution already exists
isPropertyIncluded(String, String) - Method in class mmcorej.Configuration
 
isPropertyPreInit(String, String) - Method in class mmcorej.CMMCore
Tells us whether the property must be defined prior to initialization.
isPropertyReadOnly(String, String) - Method in class mmcorej.CMMCore
Tells us whether the property can be modified.
isPropertySequenceable(String, String) - Method in class mmcorej.CMMCore
Queries device if the specified property can be used in a sequence
IsReadOnly() - Method in class mmcorej.MetadataTag
 
IsSequenceable - Static variable in class mmcorej.ActionType
 
isSequenceRunning() - Method in class mmcorej.CMMCore
Check if the current camera is acquiring the sequence Returns false when the sequence is done
isSequenceRunning(String) - Method in class mmcorej.CMMCore
Check if the specified camera is acquiring the sequence Returns false when the sequence is done
isSettingIncluded(PropertySetting) - Method in class mmcorej.Configuration
 
isStageLinearSequenceable(String) - Method in class mmcorej.CMMCore
Queries if the stage can be used in a linear sequence A linear sequence is defined by a stepsize and number of slices
isStageSequenceable(String) - Method in class mmcorej.CMMCore
Queries stage if it can be used in a sequence
isXYStageSequenceable(String) - Method in class mmcorej.CMMCore
Queries XY stage if it can be used in a sequence
iterator() - Method in class mmcorej.BooleanVector
 
iterator() - Method in class mmcorej.CharVector
 
iterator() - Method in class mmcorej.DoubleVector
 
iterator() - Method in class mmcorej.LongVector
 
iterator() - Method in class mmcorej.StrVector
 
iterator() - Method in class mmcorej.UnsignedVector
 

J

join(String) - Method in class mmcorej.org.json.JSONArray
Make a string from the contents of this JSONArray.
JSONArray - Class in mmcorej.org.json
A JSONArray is an ordered sequence of values.
JSONArray() - Constructor for class mmcorej.org.json.JSONArray
Construct an empty JSONArray.
JSONArray(JSONTokener) - Constructor for class mmcorej.org.json.JSONArray
Construct a JSONArray from a JSONTokener.
JSONArray(String) - Constructor for class mmcorej.org.json.JSONArray
Construct a JSONArray from a source sJSON text.
JSONArray(Collection<?>) - Constructor for class mmcorej.org.json.JSONArray
Construct a JSONArray from a Collection.
JSONException - Exception in mmcorej.org.json
The JSONException is thrown by the JSON.org classes then things are amiss.
JSONException(String) - Constructor for exception mmcorej.org.json.JSONException
Constructs a JSONException with an explanatory message.
JSONException(Throwable) - Constructor for exception mmcorej.org.json.JSONException
 
JSONObject - Class in mmcorej.org.json
A JSONObject is an unordered collection of name/value pairs.
JSONObject() - Constructor for class mmcorej.org.json.JSONObject
Construct an empty JSONObject.
JSONObject(JSONObject, String[]) - Constructor for class mmcorej.org.json.JSONObject
Construct a JSONObject from a subset of another JSONObject.
JSONObject(JSONTokener) - Constructor for class mmcorej.org.json.JSONObject
Construct a JSONObject from a JSONTokener.
JSONObject(Map<String, ?>) - Constructor for class mmcorej.org.json.JSONObject
Construct a JSONObject from a Map.
JSONObject(String) - Constructor for class mmcorej.org.json.JSONObject
Construct a JSONObject from a string.
JSONStringer - Class in mmcorej.org.json
JSONStringer provides a quick and convenient way of producing JSON text.
JSONStringer() - Constructor for class mmcorej.org.json.JSONStringer
Make a fresh JSONStringer.
JSONTokener - Class in mmcorej.org.json
A JSONTokener takes a source string and extracts characters and tokens from it.
JSONTokener(String) - Constructor for class mmcorej.org.json.JSONTokener
Construct a JSONTokener from a string.
JSONWriter - Class in mmcorej.org.json
JSONWriter provides a quick and convenient way of producing JSON text.
JSONWriter(Writer) - Constructor for class mmcorej.org.json.JSONWriter
Make a fresh JSONWriter.

K

key(String) - Method in class mmcorej.org.json.JSONWriter
Append a key.
keys() - Method in class mmcorej.org.json.JSONObject
Get an enumeration of the keys of the JSONObject.

L

length() - Method in class mmcorej.org.json.JSONArray
Get the number of elements in the JSONArray, included nulls.
length() - Method in class mmcorej.org.json.JSONObject
Get the number of keys stored in the JSONObject.
LIBRARY_PATH - Static variable in interface mmcorej.MMCoreJConstants
 
loadDevice(String, String, String) - Method in class mmcorej.CMMCore
 
loadExposureSequence(String, DoubleVector) - Method in class mmcorej.CMMCore
Transfer a sequence of exposure times to the camera.
loadGalvoPolygons(String) - Method in class mmcorej.CMMCore
Load a set of galvo polygons to the device
loadPropertySequence(String, String, StrVector) - Method in class mmcorej.CMMCore
 
loadSLMSequence(String, List<byte[]>) - Method in class mmcorej.CMMCore
Load a sequence of images into the SLM
loadStageSequence(String, DoubleVector) - Method in class mmcorej.CMMCore
Transfer a sequence of events/states/whatever to the device This should only be called for device-properties that are sequenceable
loadSystemConfiguration(String) - Method in class mmcorej.CMMCore
Loads the system configuration from the text file conforming to the MM specific format.
loadSystemState(String) - Method in class mmcorej.CMMCore
Loads the system configuration from the text file conforming to the MM specific format.
loadXYStageSequence(String, DoubleVector, DoubleVector) - Method in class mmcorej.CMMCore
 
logMessage(String) - Method in class mmcorej.CMMCore
Record text message in the log file.
logMessage(String, boolean) - Method in class mmcorej.CMMCore
Record text message in the log file.
LongVector - Class in mmcorej
 
LongVector(long, boolean) - Constructor for class mmcorej.LongVector
 
LongVector() - Constructor for class mmcorej.LongVector
 
LongVector(long) - Constructor for class mmcorej.LongVector
 
LongVector_add(long, LongVector, int) - Static method in class mmcorej.MMCoreJJNI
 
LongVector_capacity(long, LongVector) - Static method in class mmcorej.MMCoreJJNI
 
LongVector_clear(long, LongVector) - Static method in class mmcorej.MMCoreJJNI
 
LongVector_get(long, LongVector, int) - Static method in class mmcorej.MMCoreJJNI
 
LongVector_isEmpty(long, LongVector) - Static method in class mmcorej.MMCoreJJNI
 
LongVector_reserve(long, LongVector, long) - Static method in class mmcorej.MMCoreJJNI
 
LongVector_set(long, LongVector, int, int) - Static method in class mmcorej.MMCoreJJNI
 
LongVector_size(long, LongVector) - Static method in class mmcorej.MMCoreJJNI
 
LT - Static variable in class mmcorej.org.json.XML
The Character '<'.

M

MagnifierDevice - Static variable in class mmcorej.DeviceType
 
main(String[]) - Static method in class mmcorej.org.json.Test
Entry point.
MaxStrLength_get() - Static method in class mmcorej.MMCoreJJNI
 
Merge(Metadata) - Method in class mmcorej.Metadata
 
Metadata - Class in mmcorej
 
Metadata(long, boolean) - Constructor for class mmcorej.Metadata
 
Metadata() - Constructor for class mmcorej.Metadata
 
Metadata(Metadata) - Constructor for class mmcorej.Metadata
 
Metadata_Clear(long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_Dump(long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_GetArrayTag(long, Metadata, String) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_GetKeys(long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_GetSingleTag(long, Metadata, String) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_HasTag(long, Metadata, String) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_Merge(long, Metadata, long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_readLine(long, Metadata, long) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_RemoveTag(long, Metadata, String) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_Restore(long, Metadata, String) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_Serialize(long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
Metadata_SetTag(long, Metadata, long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag - Class in mmcorej
 
MetadataArrayTag(long, boolean) - Constructor for class mmcorej.MetadataArrayTag
 
MetadataArrayTag() - Constructor for class mmcorej.MetadataArrayTag
 
MetadataArrayTag(String, String, boolean) - Constructor for class mmcorej.MetadataArrayTag
 
MetadataArrayTag_AddValue(long, MetadataArrayTag, String) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_Clone(long, MetadataArrayTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_GetSize(long, MetadataArrayTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_GetValue(long, MetadataArrayTag, long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_Restore__SWIG_0(long, MetadataArrayTag, String) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_Restore__SWIG_1(long, MetadataArrayTag, long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_Serialize(long, MetadataArrayTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_SetValue(long, MetadataArrayTag, String, long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_SWIGUpcast(long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataArrayTag_ToArrayTag(long, MetadataArrayTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataError - Class in mmcorej
 
MetadataError(long, boolean) - Constructor for class mmcorej.MetadataError
 
MetadataError(String) - Constructor for class mmcorej.MetadataError
 
MetadataError_getMsg(long, MetadataError) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag - Class in mmcorej
 
MetadataSingleTag(long, boolean) - Constructor for class mmcorej.MetadataSingleTag
 
MetadataSingleTag() - Constructor for class mmcorej.MetadataSingleTag
 
MetadataSingleTag(String, String, boolean) - Constructor for class mmcorej.MetadataSingleTag
 
MetadataSingleTag_Clone(long, MetadataSingleTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag_GetValue(long, MetadataSingleTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag_Restore__SWIG_0(long, MetadataSingleTag, String) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag_Restore__SWIG_1(long, MetadataSingleTag, long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag_Serialize(long, MetadataSingleTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag_SetValue(long, MetadataSingleTag, String) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag_SWIGUpcast(long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataSingleTag_ToSingleTag(long, MetadataSingleTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag - Class in mmcorej
 
MetadataTag(long, boolean) - Constructor for class mmcorej.MetadataTag
 
MetadataTag_Clone(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_GetDevice(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_GetName(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_GetQualifiedName(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_IsReadOnly(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_ReadLine(long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_Restore__SWIG_0(long, MetadataTag, String) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_Restore__SWIG_1(long, MetadataTag, long) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_Serialize(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_SetDevice(long, MetadataTag, String) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_SetName(long, MetadataTag, String) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_SetReadOnly(long, MetadataTag, boolean) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_ToArrayTag(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
MetadataTag_ToSingleTag(long, MetadataTag) - Static method in class mmcorej.MMCoreJJNI
 
Misconfigured - Static variable in class mmcorej.DeviceDetectionStatus
 
Misconfigured_get() - Static method in class mmcorej.MMCoreJJNI
 
MM_CODE_ERR - Static variable in interface mmcorej.MMCoreJConstants
 
MM_CODE_ERR_get() - Static method in class mmcorej.MMCoreJJNI
 
MM_CODE_OK - Static variable in interface mmcorej.MMCoreJConstants
 
MM_CODE_OK_get() - Static method in class mmcorej.MMCoreJJNI
 
mmcorej - package mmcorej
 
MMCoreJ - Class in mmcorej
 
MMCoreJ() - Constructor for class mmcorej.MMCoreJ
 
mmcorej.org.json - package mmcorej.org.json
 
MMCoreJConstants - Interface in mmcorej
 
MMCoreJJNI - Class in mmcorej
 
MMCoreJJNI() - Constructor for class mmcorej.MMCoreJJNI
 
MMEventCallback - Class in mmcorej
 
MMEventCallback(long, boolean) - Constructor for class mmcorej.MMEventCallback
 
MMEventCallback() - Constructor for class mmcorej.MMEventCallback
 
MMEventCallback_change_ownership(MMEventCallback, long, boolean) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_director_connect(MMEventCallback, long, boolean, boolean) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onChannelGroupChanged(long, MMEventCallback, String) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onChannelGroupChangedSwigExplicitMMEventCallback(long, MMEventCallback, String) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onConfigGroupChanged(long, MMEventCallback, String, String) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onConfigGroupChangedSwigExplicitMMEventCallback(long, MMEventCallback, String, String) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onExposureChanged(long, MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onExposureChangedSwigExplicitMMEventCallback(long, MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPixelSizeAffineChanged(long, MMEventCallback, double, double, double, double, double, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPixelSizeAffineChangedSwigExplicitMMEventCallback(long, MMEventCallback, double, double, double, double, double, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPixelSizeChanged(long, MMEventCallback, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPixelSizeChangedSwigExplicitMMEventCallback(long, MMEventCallback, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPropertiesChanged(long, MMEventCallback) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPropertiesChangedSwigExplicitMMEventCallback(long, MMEventCallback) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPropertyChanged(long, MMEventCallback, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onPropertyChangedSwigExplicitMMEventCallback(long, MMEventCallback, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onSLMExposureChanged(long, MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onSLMExposureChangedSwigExplicitMMEventCallback(long, MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onStagePositionChanged(long, MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onStagePositionChangedSwigExplicitMMEventCallback(long, MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onSystemConfigurationLoaded(long, MMEventCallback) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onSystemConfigurationLoadedSwigExplicitMMEventCallback(long, MMEventCallback) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onXYStagePositionChanged(long, MMEventCallback, String, double, double) - Static method in class mmcorej.MMCoreJJNI
 
MMEventCallback_onXYStagePositionChangedSwigExplicitMMEventCallback(long, MMEventCallback, String, double, double) - Static method in class mmcorej.MMCoreJJNI
 
mode - Variable in class mmcorej.org.json.JSONWriter
The current mode.
more() - Method in class mmcorej.org.json.JSONTokener
Determine if the source string still contains characters that next() can consume.

N

names() - Method in class mmcorej.org.json.JSONObject
Produce a JSONArray containing the names of the elements of this JSONObject.
new_BooleanVector__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_BooleanVector__SWIG_1(long) - Static method in class mmcorej.MMCoreJJNI
 
new_CharVector__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_CharVector__SWIG_1(long) - Static method in class mmcorej.MMCoreJJNI
 
new_CMMCore() - Static method in class mmcorej.MMCoreJJNI
 
new_Configuration() - Static method in class mmcorej.MMCoreJJNI
 
new_DoubleVector__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_DoubleVector__SWIG_1(long) - Static method in class mmcorej.MMCoreJJNI
 
new_LongVector__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_LongVector__SWIG_1(long) - Static method in class mmcorej.MMCoreJJNI
 
new_Metadata__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_Metadata__SWIG_1(long, Metadata) - Static method in class mmcorej.MMCoreJJNI
 
new_MetadataArrayTag__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_MetadataArrayTag__SWIG_1(String, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
new_MetadataError(String) - Static method in class mmcorej.MMCoreJJNI
 
new_MetadataSingleTag__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_MetadataSingleTag__SWIG_1(String, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
new_MMEventCallback() - Static method in class mmcorej.MMCoreJJNI
 
new_pair_ss__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_pair_ss__SWIG_1(String, String) - Static method in class mmcorej.MMCoreJJNI
 
new_pair_ss__SWIG_2(long, pair_ss) - Static method in class mmcorej.MMCoreJJNI
 
new_PropertySetting__SWIG_0(String, String, String, boolean) - Static method in class mmcorej.MMCoreJJNI
 
new_PropertySetting__SWIG_1(String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
new_PropertySetting__SWIG_2() - Static method in class mmcorej.MMCoreJJNI
 
new_StrMap__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_StrMap__SWIG_1(long, StrMap) - Static method in class mmcorej.MMCoreJJNI
 
new_StrVector__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_StrVector__SWIG_1(long) - Static method in class mmcorej.MMCoreJJNI
 
new_UnsignedVector__SWIG_0() - Static method in class mmcorej.MMCoreJJNI
 
new_UnsignedVector__SWIG_1(long) - Static method in class mmcorej.MMCoreJJNI
 
next() - Method in class mmcorej.org.json.JSONTokener
Get the next character in the source string.
next(char) - Method in class mmcorej.org.json.JSONTokener
Consume the next character, and check that it matches a specified character.
next(int) - Method in class mmcorej.org.json.JSONTokener
Get the next n characters.
nextCDATA() - Method in class mmcorej.org.json.XMLTokener
Get the text in the CDATA block.
nextClean() - Method in class mmcorej.org.json.JSONTokener
Get the next char in the string, skipping whitespace and comments (slashslash, slashstar, and hash).
nextContent() - Method in class mmcorej.org.json.XMLTokener
Get the next XML outer token, trimming whitespace.
nextEntity(char) - Method in class mmcorej.org.json.XMLTokener
Return the next entity.
nextMeta() - Method in class mmcorej.org.json.XMLTokener
Returns the next XML meta token.
nextString(char) - Method in class mmcorej.org.json.JSONTokener
Return the characters up to the next close quote character.
nextTo(char) - Method in class mmcorej.org.json.JSONTokener
Get the text up but not including the specified character or the end of line, whichever comes first.
nextTo(String) - Method in class mmcorej.org.json.JSONTokener
Get the text up but not including one of the specified delimeter characters or the end of line, whichever comes first.
nextToken() - Method in class mmcorej.org.json.HTTPTokener
Get the next token or string.
nextToken() - Method in class mmcorej.org.json.XMLTokener
Get the next XML Token.
nextValue() - Method in class mmcorej.org.json.JSONTokener
Get the next value.
NoAction - Static variable in class mmcorej.ActionType
 
noop() - Static method in class mmcorej.CMMCore
A static method that does nothing.
NULL - Static variable in class mmcorej.org.json.JSONObject
It is sometimes more convenient and less ambiguous to have a NULL object than to use Java's null value.
numberToString(Number) - Static method in class mmcorej.org.json.JSONObject
Produce a string from a number.

O

object() - Method in class mmcorej.org.json.JSONWriter
Begin appending a new object.
onChannelGroupChanged(String) - Method in class mmcorej.MMEventCallback
 
onConfigGroupChanged(String, String) - Method in class mmcorej.MMEventCallback
 
onExposureChanged(String, double) - Method in class mmcorej.MMEventCallback
 
onPixelSizeAffineChanged(double, double, double, double, double, double) - Method in class mmcorej.MMEventCallback
 
onPixelSizeChanged(double) - Method in class mmcorej.MMEventCallback
 
onPropertiesChanged() - Method in class mmcorej.MMEventCallback
 
onPropertyChanged(String, String, String) - Method in class mmcorej.MMEventCallback
 
onSLMExposureChanged(String, double) - Method in class mmcorej.MMEventCallback
 
onStagePositionChanged(String, double) - Method in class mmcorej.MMEventCallback
 
onSystemConfigurationLoaded() - Method in class mmcorej.MMEventCallback
 
onXYStagePositionChanged(String, double, double) - Method in class mmcorej.MMEventCallback
 
opt(int) - Method in class mmcorej.org.json.JSONArray
Get the optional object value associated with an index.
opt(String) - Method in class mmcorej.org.json.JSONObject
Get an optional value associated with a key.
optBoolean(int) - Method in class mmcorej.org.json.JSONArray
Get the optional boolean value associated with an index.
optBoolean(int, boolean) - Method in class mmcorej.org.json.JSONArray
Get the optional boolean value associated with an index.
optBoolean(String) - Method in class mmcorej.org.json.JSONObject
Get an optional boolean associated with a key.
optBoolean(String, boolean) - Method in class mmcorej.org.json.JSONObject
Get an optional boolean associated with a key.
optDouble(int) - Method in class mmcorej.org.json.JSONArray
Get the optional double value associated with an index.
optDouble(int, double) - Method in class mmcorej.org.json.JSONArray
Get the optional double value associated with an index.
optDouble(String) - Method in class mmcorej.org.json.JSONObject
Get an optional double associated with a key, or NaN if there is no such key or if its value is not a number.
optDouble(String, double) - Method in class mmcorej.org.json.JSONObject
Get an optional double associated with a key, or the defaultValue if there is no such key or if its value is not a number.
optInt(int) - Method in class mmcorej.org.json.JSONArray
Get the optional int value associated with an index.
optInt(int, int) - Method in class mmcorej.org.json.JSONArray
Get the optional int value associated with an index.
optInt(String) - Method in class mmcorej.org.json.JSONObject
Get an optional int value associated with a key, or zero if there is no such key or if the value is not a number.
optInt(String, int) - Method in class mmcorej.org.json.JSONObject
Get an optional int value associated with a key, or the default if there is no such key or if the value is not a number.
optJSONArray(int) - Method in class mmcorej.org.json.JSONArray
Get the optional JSONArray associated with an index.
optJSONArray(String) - Method in class mmcorej.org.json.JSONObject
Get an optional JSONArray associated with a key.
optJSONObject(int) - Method in class mmcorej.org.json.JSONArray
Get the optional JSONObject associated with an index.
optJSONObject(String) - Method in class mmcorej.org.json.JSONObject
Get an optional JSONObject associated with a key.
optLong(int) - Method in class mmcorej.org.json.JSONArray
Get the optional long value associated with an index.
optLong(int, long) - Method in class mmcorej.org.json.JSONArray
Get the optional long value associated with an index.
optLong(String) - Method in class mmcorej.org.json.JSONObject
Get an optional long value associated with a key, or zero if there is no such key or if the value is not a number.
optLong(String, long) - Method in class mmcorej.org.json.JSONObject
Get an optional long value associated with a key, or the default if there is no such key or if the value is not a number.
optString(int) - Method in class mmcorej.org.json.JSONArray
Get the optional string value associated with an index.
optString(int, String) - Method in class mmcorej.org.json.JSONArray
Get the optional string associated with an index.
optString(String) - Method in class mmcorej.org.json.JSONObject
Get an optional string associated with a key.
optString(String, String) - Method in class mmcorej.org.json.JSONObject
Get an optional string associated with a key.

P

pair_ss - Class in mmcorej
 
pair_ss(long, boolean) - Constructor for class mmcorej.pair_ss
 
pair_ss() - Constructor for class mmcorej.pair_ss
 
pair_ss(String, String) - Constructor for class mmcorej.pair_ss
 
pair_ss(pair_ss) - Constructor for class mmcorej.pair_ss
 
pair_ss_first_get(long, pair_ss) - Static method in class mmcorej.MMCoreJJNI
 
pair_ss_first_set(long, pair_ss, String) - Static method in class mmcorej.MMCoreJJNI
 
pair_ss_second_get(long, pair_ss) - Static method in class mmcorej.MMCoreJJNI
 
pair_ss_second_set(long, pair_ss, String) - Static method in class mmcorej.MMCoreJJNI
 
pointGalvoAndFire(String, double, double, double) - Method in class mmcorej.CMMCore
 
popNextImage() - Method in class mmcorej.CMMCore
Gets and removes the next image from the circular buffer.
popNextImageMD(long, long, Metadata) - Method in class mmcorej.CMMCore
 
popNextImageMD(Metadata) - Method in class mmcorej.CMMCore
Gets and removes the next image (and metadata) from the circular buffer
popNextTaggedImage(int) - Method in class mmcorej.CMMCore
 
popNextTaggedImage() - Method in class mmcorej.CMMCore
 
PortType - Class in mmcorej
 
prepareSequenceAcquisition(String) - Method in class mmcorej.CMMCore
Prepare the camera for the sequence acquisition to save the time in the StartSequenceAcqusition() call which is supposed to come next.
PropertySetting - Class in mmcorej
 
PropertySetting(long, boolean) - Constructor for class mmcorej.PropertySetting
 
PropertySetting(String, String, String, boolean) - Constructor for class mmcorej.PropertySetting
 
PropertySetting(String, String, String) - Constructor for class mmcorej.PropertySetting
 
PropertySetting() - Constructor for class mmcorej.PropertySetting
 
PropertySetting_generateKey(String, String) - Static method in class mmcorej.MMCoreJJNI
 
PropertySetting_getDeviceLabel(long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
PropertySetting_getKey(long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
PropertySetting_getPropertyName(long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
PropertySetting_getPropertyValue(long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
PropertySetting_getReadOnly(long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
PropertySetting_getVerbose(long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
PropertySetting_isEqualTo(long, PropertySetting, long, PropertySetting) - Static method in class mmcorej.MMCoreJJNI
 
PropertyType - Class in mmcorej
 
put(boolean) - Method in class mmcorej.org.json.JSONArray
Append a boolean value.
put(double) - Method in class mmcorej.org.json.JSONArray
Append a double value.
put(int) - Method in class mmcorej.org.json.JSONArray
Append an int value.
put(long) - Method in class mmcorej.org.json.JSONArray
Append an long value.
put(Object) - Method in class mmcorej.org.json.JSONArray
Append an object value.
put(int, boolean) - Method in class mmcorej.org.json.JSONArray
Put or replace a boolean value in the JSONArray.
put(int, double) - Method in class mmcorej.org.json.JSONArray
Put or replace a double value.
put(int, int) - Method in class mmcorej.org.json.JSONArray
Put or replace an int value.
put(int, long) - Method in class mmcorej.org.json.JSONArray
Put or replace a long value.
put(int, Object) - Method in class mmcorej.org.json.JSONArray
Put or replace an object value in the JSONArray.
put(String, boolean) - Method in class mmcorej.org.json.JSONObject
Put a key/boolean pair in the JSONObject.
put(String, double) - Method in class mmcorej.org.json.JSONObject
Put a key/double pair in the JSONObject.
put(String, int) - Method in class mmcorej.org.json.JSONObject
Put a key/int pair in the JSONObject.
put(String, long) - Method in class mmcorej.org.json.JSONObject
Put a key/long pair in the JSONObject.
put(String, Object) - Method in class mmcorej.org.json.JSONObject
Put a key/value pair in the JSONObject.
putOpt(String, Object) - Method in class mmcorej.org.json.JSONObject
Put a key/value pair in the JSONObject, but only if the key and the value are both non-null.

Q

QUEST - Static variable in class mmcorej.org.json.XML
The Character '?'.
QUOT - Static variable in class mmcorej.org.json.XML
The Character '"'.
quote(String) - Static method in class mmcorej.org.json.JSONObject
Produce a string in double quotes with backslash sequences in all the right places.

R

readFromSerialPort(String) - Method in class mmcorej.CMMCore
Reads the contents of the Rx buffer.
readLine(SWIGTYPE_p_std__istringstream) - Method in class mmcorej.Metadata
 
ReadLine(SWIGTYPE_p_std__istringstream) - Static method in class mmcorej.MetadataTag
 
registerCallback(MMEventCallback) - Method in class mmcorej.CMMCore
Register a callback (listener class).
remove(String) - Method in class mmcorej.org.json.JSONObject
Remove a name and its value, if present.
RemoveTag(String) - Method in class mmcorej.Metadata
 
renameConfig(String, String, String) - Method in class mmcorej.CMMCore
 
renameConfigGroup(String, String) - Method in class mmcorej.CMMCore
Renames a configuration group.
renamePixelSizeConfig(String, String) - Method in class mmcorej.CMMCore
Renames a pixel size configuration.
reserve(long) - Method in class mmcorej.BooleanVector
 
reserve(long) - Method in class mmcorej.CharVector
 
reserve(long) - Method in class mmcorej.DoubleVector
 
reserve(long) - Method in class mmcorej.LongVector
 
reserve(long) - Method in class mmcorej.StrVector
 
reserve(long) - Method in class mmcorej.UnsignedVector
 
reset() - Method in class mmcorej.CMMCore
Unloads all devices from the core, clears all configuration data.
Restore(String) - Method in class mmcorej.Metadata
 
Restore(String) - Method in class mmcorej.MetadataArrayTag
 
Restore(SWIGTYPE_p_std__istringstream) - Method in class mmcorej.MetadataArrayTag
 
Restore(String) - Method in class mmcorej.MetadataSingleTag
 
Restore(SWIGTYPE_p_std__istringstream) - Method in class mmcorej.MetadataSingleTag
 
Restore(String) - Method in class mmcorej.MetadataTag
 
Restore(SWIGTYPE_p_std__istringstream) - Method in class mmcorej.MetadataTag
 
rowToJSONArray(JSONTokener) - Static method in class mmcorej.org.json.CDL
Produce a JSONArray of strings from a row of comma delimited values.
rowToJSONObject(JSONArray, JSONTokener) - Static method in class mmcorej.org.json.CDL
Produce a JSONObject from a row of comma delimited text, using a parallel JSONArray of strings to provides the names of the elements.
rowToString(JSONArray) - Static method in class mmcorej.org.json.CDL
Produce a comma delimited text row from a JSONArray.
runGalvoPolygons(String) - Method in class mmcorej.CMMCore
Run a loop of galvo polygons
runGalvoSequence(String) - Method in class mmcorej.CMMCore
Run a sequence of galvo positions

S

saveSystemConfiguration(String) - Method in class mmcorej.CMMCore
Saves the current system configuration to a text file of the MM specific format.
saveSystemState(String) - Method in class mmcorej.CMMCore
Saves the current system state to a text file of the MM specific format.
SerialDevice - Static variable in class mmcorej.DeviceType
 
Serialize() - Method in class mmcorej.Metadata
 
Serialize() - Method in class mmcorej.MetadataArrayTag
 
Serialize() - Method in class mmcorej.MetadataSingleTag
 
Serialize() - Method in class mmcorej.MetadataTag
 
SerialPort - Static variable in class mmcorej.PortType
 
set(int, boolean) - Method in class mmcorej.BooleanVector
 
set(int, char) - Method in class mmcorej.CharVector
 
set(int, double) - Method in class mmcorej.DoubleVector
 
set(int, int) - Method in class mmcorej.LongVector
 
set(String, String) - Method in class mmcorej.StrMap
 
set(int, String) - Method in class mmcorej.StrVector
 
set(int, long) - Method in class mmcorej.UnsignedVector
 
setAdapterOrigin(String, double) - Method in class mmcorej.CMMCore
Enable software translation of coordinates for the given focus/Z stage.
setAdapterOrigin(double) - Method in class mmcorej.CMMCore
Enable software translation of coordinates for the current focus/Z stage.
setAdapterOriginXY(String, double, double) - Method in class mmcorej.CMMCore
 
setAdapterOriginXY(double, double) - Method in class mmcorej.CMMCore
Enable software translation of coordinates for the current XY stage.
setAutoFocusDevice(String) - Method in class mmcorej.CMMCore
Sets the current auto-focus device.
setAutoFocusOffset(double) - Method in class mmcorej.CMMCore
Applies offset the one-shot focusing device.
setAutoShutter(boolean) - Method in class mmcorej.CMMCore
If this option is enabled Shutter automatically opens and closes when the image is acquired.
setCameraDevice(String) - Method in class mmcorej.CMMCore
Sets the current camera device.
setChannelGroup(String) - Method in class mmcorej.CMMCore
Specifies the group determining the channel selection.
setCircularBufferMemoryFootprint(long) - Method in class mmcorej.CMMCore
Reserve memory for the circular buffer.
setConfig(String, String) - Method in class mmcorej.CMMCore
Applies a configuration to a group.
SetDevice(String) - Method in class mmcorej.MetadataTag
 
setDeviceAdapterSearchPaths(StrVector) - Method in class mmcorej.CMMCore
Set the device adapter search paths.
setDeviceDelayMs(String, double) - Method in class mmcorej.CMMCore
Overrides the built-in value for the action delay.
setExposure(double) - Method in class mmcorej.CMMCore
Sets the exposure setting of the current camera in milliseconds.
setExposure(String, double) - Method in class mmcorej.CMMCore
Sets the exposure setting of the specified camera in milliseconds.
setFirst(String) - Method in class mmcorej.pair_ss
 
setFocusDevice(String) - Method in class mmcorej.CMMCore
Sets the current focus device.
setFocusDirection(String, int) - Method in class mmcorej.CMMCore
Set the focus direction of a stage.
setGalvoDevice(String) - Method in class mmcorej.CMMCore
Sets the current galvo device.
setGalvoIlluminationState(String, boolean) - Method in class mmcorej.CMMCore
Set the galvo's illumination state to on or off
setGalvoPolygonRepetitions(String, int) - Method in class mmcorej.CMMCore
Set the number of times to loop galvo polygons
setGalvoPosition(String, double, double) - Method in class mmcorej.CMMCore
 
setGalvoSpotInterval(String, double) - Method in class mmcorej.CMMCore
 
setImageProcessorDevice(String) - Method in class mmcorej.CMMCore
Sets the current image processor device.
setIncludeSystemStateCache(boolean) - Method in class mmcorej.CMMCore
 
setMultiROI(List<Rectangle>) - Method in class mmcorej.CMMCore
 
setMultiROI(UnsignedVector, UnsignedVector, UnsignedVector, UnsignedVector) - Method in class mmcorej.CMMCore
 
SetName(String) - Method in class mmcorej.MetadataTag
 
setOrigin(String) - Method in class mmcorej.CMMCore
Zero the given focus/Z stage's coordinates at the current position.
setOrigin() - Method in class mmcorej.CMMCore
Zero the current focus/Z stage's coordinates at the current position.
setOriginX(String) - Method in class mmcorej.CMMCore
Zero the given XY stage's X coordinate at the current position.
setOriginX() - Method in class mmcorej.CMMCore
Zero the given XY stage's X coordinate at the current position.
setOriginXY(String) - Method in class mmcorej.CMMCore
Zero the given XY stage's coordinates at the current position.
setOriginXY() - Method in class mmcorej.CMMCore
Zero the current XY stage's coordinates at the current position.
setOriginY(String) - Method in class mmcorej.CMMCore
Zero the given XY stage's Y coordinate at the current position.
setOriginY() - Method in class mmcorej.CMMCore
Zero the given XY stage's Y coordinate at the current position.
setParentLabel(String, String) - Method in class mmcorej.CMMCore
Sets parent device label
setPixelSizeAffine(String, DoubleVector) - Method in class mmcorej.CMMCore
Sets the raw affine transform for the specific pixel size configuration The affine transform consists of the first two rows of a 3x3 matrix, the third row is alsways assumed to be 0.0 0.0 1.0.
setPixelSizeConfig(String) - Method in class mmcorej.CMMCore
Applies a Pixel Size Configuration.
setPixelSizeUm(String, double) - Method in class mmcorej.CMMCore
Sets pixel size in microns for the specified resolution sensing configuration preset.
setPosition(String, double) - Method in class mmcorej.CMMCore
Sets the position of the stage in microns.
setPosition(double) - Method in class mmcorej.CMMCore
Sets the position of the stage in microns.
setPrimaryLogFile(String, boolean) - Method in class mmcorej.CMMCore
Set the primary Core log file.
setPrimaryLogFile(String) - Method in class mmcorej.CMMCore
 
setProperty(String, String, String) - Method in class mmcorej.CMMCore
 
setProperty(String, String, boolean) - Method in class mmcorej.CMMCore
 
setProperty(String, String, int) - Method in class mmcorej.CMMCore
 
setProperty(String, String, float) - Method in class mmcorej.CMMCore
 
setProperty(String, String, double) - Method in class mmcorej.CMMCore
 
SetReadOnly(boolean) - Method in class mmcorej.MetadataTag
 
setRelativePosition(String, double) - Method in class mmcorej.CMMCore
Sets the relative position of the stage in microns.
setRelativePosition(double) - Method in class mmcorej.CMMCore
Sets the relative position of the stage in microns.
setRelativeXYPosition(String, double, double) - Method in class mmcorej.CMMCore
 
setRelativeXYPosition(double, double) - Method in class mmcorej.CMMCore
Sets the relative position of the XY stage in microns.
setROI(int, int, int, int) - Method in class mmcorej.CMMCore
 
setROI(String, int, int, int, int) - Method in class mmcorej.CMMCore
 
setSecond(String) - Method in class mmcorej.pair_ss
 
setSerialPortCommand(String, String, String) - Method in class mmcorej.CMMCore
 
setSerialProperties(String, String, String, String, String, String, String) - Method in class mmcorej.CMMCore
 
setShutterDevice(String) - Method in class mmcorej.CMMCore
Sets the current shutter device.
setShutterOpen(boolean) - Method in class mmcorej.CMMCore
Opens or closes the currently selected (default) shutter.
setShutterOpen(String, boolean) - Method in class mmcorej.CMMCore
Opens or closes the specified shutter.
setSLMDevice(String) - Method in class mmcorej.CMMCore
Sets the current slm device.
setSLMExposure(String, double) - Method in class mmcorej.CMMCore
For SLM devices with build-in light source (such as projectors) this will set the exposure time, but not (yet) start the illumination
setSLMImage(String, byte[]) - Method in class mmcorej.CMMCore
Write an 8-bit monochrome image to the SLM.
setSLMImage(String, int[]) - Method in class mmcorej.CMMCore
Write an 8-bit monochrome image to the SLM.
setSLMPixelsTo(String, short) - Method in class mmcorej.CMMCore
Set all SLM pixels to a single 8-bit intensity.
setSLMPixelsTo(String, short, short, short) - Method in class mmcorej.CMMCore
 
setStageLinearSequence(String, double, int) - Method in class mmcorej.CMMCore
 
setState(String, int) - Method in class mmcorej.CMMCore
Sets the state (position) on the specific device.
setStateLabel(String, String) - Method in class mmcorej.CMMCore
Sets device state using the previously assigned label (string).
setSystemState(Configuration) - Method in class mmcorej.CMMCore
Sets all properties contained in the Configuration object.
SetTag(MetadataTag) - Method in class mmcorej.Metadata
 
setTimeoutMs(int) - Method in class mmcorej.CMMCore
 
SetValue(String, long) - Method in class mmcorej.MetadataArrayTag
 
SetValue(String) - Method in class mmcorej.MetadataSingleTag
 
setXYPosition(String, double, double) - Method in class mmcorej.CMMCore
 
setXYPosition(double, double) - Method in class mmcorej.CMMCore
Sets the position of the XY stage in microns.
setXYStageDevice(String) - Method in class mmcorej.CMMCore
Sets the current XY device.
ShutterDevice - Static variable in class mmcorej.DeviceType
 
SignalIODevice - Static variable in class mmcorej.DeviceType
 
size() - Method in class mmcorej.BooleanVector
 
size() - Method in class mmcorej.CharVector
 
size() - Method in class mmcorej.Configuration
 
size() - Method in class mmcorej.DoubleVector
 
size() - Method in class mmcorej.LongVector
 
size() - Method in class mmcorej.StrMap
 
size() - Method in class mmcorej.StrVector
 
size() - Method in class mmcorej.UnsignedVector
 
skipPast(String) - Method in class mmcorej.org.json.JSONTokener
Skip characters until past the requested string.
skipTo(char) - Method in class mmcorej.org.json.JSONTokener
Skip characters until the next character is the requested character.
SLASH - Static variable in class mmcorej.org.json.XML
The Character '/'.
sleep(double) - Method in class mmcorej.CMMCore
Waits (blocks the calling thread) for specified time in milliseconds.
SLMDevice - Static variable in class mmcorej.DeviceType
 
snapImage() - Method in class mmcorej.CMMCore
Acquires a single image with current settings.
StageDevice - Static variable in class mmcorej.DeviceType
 
startContinuousSequenceAcquisition(double) - Method in class mmcorej.CMMCore
Starts the continuous camera sequence acquisition.
startExposureSequence(String) - Method in class mmcorej.CMMCore
Starts an ongoing sequence of triggered exposures in a camera This should only be called for cameras where exposure time is sequenceable
startPropertySequence(String, String) - Method in class mmcorej.CMMCore
Starts an ongoing sequence of triggered events in a property of a device This should only be called for device-properties that are sequenceable
startSecondaryLogFile(String, boolean, boolean, boolean) - Method in class mmcorej.CMMCore
 
startSecondaryLogFile(String, boolean, boolean) - Method in class mmcorej.CMMCore
 
startSecondaryLogFile(String, boolean) - Method in class mmcorej.CMMCore
 
StartSequence - Static variable in class mmcorej.ActionType
 
startSequenceAcquisition(int, double, boolean) - Method in class mmcorej.CMMCore
 
startSequenceAcquisition(String, int, double, boolean) - Method in class mmcorej.CMMCore
 
startSLMSequence(String) - Method in class mmcorej.CMMCore
Starts the sequence previously uploaded to the SLM
startStageSequence(String) - Method in class mmcorej.CMMCore
Starts an ongoing sequence of triggered events in a stage This should only be called for stages
startXYStageSequence(String) - Method in class mmcorej.CMMCore
Starts an ongoing sequence of triggered events in an XY stage This should only be called for stages
StateDevice - Static variable in class mmcorej.DeviceType
 
StatusChanged - Static variable in class mmcorej.DeviceNotification
 
stderrLogEnabled() - Method in class mmcorej.CMMCore
Indicates whether logging output goes to stdErr
stop(String) - Method in class mmcorej.CMMCore
Stop the XY or focus/Z stage motors
stopExposureSequence(String) - Method in class mmcorej.CMMCore
Stops an ongoing sequence of triggered exposures in a camera This should only be called for cameras where exposure time is sequenceable
stopPropertySequence(String, String) - Method in class mmcorej.CMMCore
Stops an ongoing sequence of triggered events in a property of a device This should only be called for device-properties that are sequenceable
stopSecondaryLogFile(int) - Method in class mmcorej.CMMCore
Stop capturing logging output into an additional file.
StopSequence - Static variable in class mmcorej.ActionType
 
stopSequenceAcquisition() - Method in class mmcorej.CMMCore
Stops streaming camera sequence acquisition.
stopSequenceAcquisition(String) - Method in class mmcorej.CMMCore
Stops streaming camera sequence acquisition for a specified camera.
stopSLMSequence(String) - Method in class mmcorej.CMMCore
Stops the SLM sequence if previously started
stopStageSequence(String) - Method in class mmcorej.CMMCore
Stops an ongoing sequence of triggered events in a stage This should only be called for stages that are sequenceable
stopXYStageSequence(String) - Method in class mmcorej.CMMCore
Stops an ongoing sequence of triggered events in an XY stage This should only be called for stages that are sequenceable
String - Static variable in class mmcorej.PropertyType
 
StrMap - Class in mmcorej
 
StrMap(long, boolean) - Constructor for class mmcorej.StrMap
 
StrMap() - Constructor for class mmcorej.StrMap
 
StrMap(StrMap) - Constructor for class mmcorej.StrMap
 
StrMap_clear(long, StrMap) - Static method in class mmcorej.MMCoreJJNI
 
StrMap_del(long, StrMap, String) - Static method in class mmcorej.MMCoreJJNI
 
StrMap_empty(long, StrMap) - Static method in class mmcorej.MMCoreJJNI
 
StrMap_get(long, StrMap, String) - Static method in class mmcorej.MMCoreJJNI
 
StrMap_has_key(long, StrMap, String) - Static method in class mmcorej.MMCoreJJNI
 
StrMap_set(long, StrMap, String, String) - Static method in class mmcorej.MMCoreJJNI
 
StrMap_size(long, StrMap) - Static method in class mmcorej.MMCoreJJNI
 
StrVector - Class in mmcorej
 
StrVector(long, boolean) - Constructor for class mmcorej.StrVector
 
StrVector() - Constructor for class mmcorej.StrVector
 
StrVector(long) - Constructor for class mmcorej.StrVector
 
StrVector_add(long, StrVector, String) - Static method in class mmcorej.MMCoreJJNI
 
StrVector_capacity(long, StrVector) - Static method in class mmcorej.MMCoreJJNI
 
StrVector_clear(long, StrVector) - Static method in class mmcorej.MMCoreJJNI
 
StrVector_get(long, StrVector, int) - Static method in class mmcorej.MMCoreJJNI
 
StrVector_isEmpty(long, StrVector) - Static method in class mmcorej.MMCoreJJNI
 
StrVector_reserve(long, StrVector, long) - Static method in class mmcorej.MMCoreJJNI
 
StrVector_set(long, StrVector, int, String) - Static method in class mmcorej.MMCoreJJNI
 
StrVector_size(long, StrVector) - Static method in class mmcorej.MMCoreJJNI
 
supportsDeviceDetection(String) - Method in class mmcorej.CMMCore
Return whether or not the device supports automatic device detection (i.e.
swigCMemOwn - Variable in class mmcorej.BooleanVector
 
swigCMemOwn - Variable in class mmcorej.CharVector
 
swigCMemOwn - Variable in class mmcorej.CMMCore
 
swigCMemOwn - Variable in class mmcorej.Configuration
 
swigCMemOwn - Variable in class mmcorej.DoubleVector
 
swigCMemOwn - Variable in class mmcorej.LongVector
 
swigCMemOwn - Variable in class mmcorej.Metadata
 
swigCMemOwn - Variable in class mmcorej.MetadataError
 
swigCMemOwn - Variable in class mmcorej.MetadataTag
 
swigCMemOwn - Variable in class mmcorej.MMEventCallback
 
swigCMemOwn - Variable in class mmcorej.pair_ss
 
swigCMemOwn - Variable in class mmcorej.PropertySetting
 
swigCMemOwn - Variable in class mmcorej.StrMap
 
swigCMemOwn - Variable in class mmcorej.StrVector
 
swigCMemOwn - Variable in class mmcorej.UnsignedVector
 
SwigDirector_MMEventCallback_onChannelGroupChanged(MMEventCallback, String) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onConfigGroupChanged(MMEventCallback, String, String) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onExposureChanged(MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onPixelSizeAffineChanged(MMEventCallback, double, double, double, double, double, double) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onPixelSizeChanged(MMEventCallback, double) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onPropertiesChanged(MMEventCallback) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onPropertyChanged(MMEventCallback, String, String, String) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onSLMExposureChanged(MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onStagePositionChanged(MMEventCallback, String, double) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onSystemConfigurationLoaded(MMEventCallback) - Static method in class mmcorej.MMCoreJJNI
 
SwigDirector_MMEventCallback_onXYStagePositionChanged(MMEventCallback, String, double, double) - Static method in class mmcorej.MMCoreJJNI
 
swigDirectorDisconnect() - Method in class mmcorej.MMEventCallback
 
swigReleaseOwnership() - Method in class mmcorej.MMEventCallback
 
swigTakeOwnership() - Method in class mmcorej.MMEventCallback
 
swigToEnum(int) - Static method in class mmcorej.ActionType
 
swigToEnum(int) - Static method in class mmcorej.DeviceDetectionStatus
 
swigToEnum(int) - Static method in class mmcorej.DeviceInitializationState
 
swigToEnum(int) - Static method in class mmcorej.DeviceNotification
 
swigToEnum(int) - Static method in class mmcorej.DeviceType
 
swigToEnum(int) - Static method in class mmcorej.FocusDirection
 
swigToEnum(int) - Static method in class mmcorej.PortType
 
swigToEnum(int) - Static method in class mmcorej.PropertyType
 
SWIGTYPE_p_std__istringstream - Class in mmcorej
 
SWIGTYPE_p_std__istringstream(long, boolean) - Constructor for class mmcorej.SWIGTYPE_p_std__istringstream
 
SWIGTYPE_p_std__istringstream() - Constructor for class mmcorej.SWIGTYPE_p_std__istringstream
 
swigValue() - Method in class mmcorej.ActionType
 
swigValue() - Method in class mmcorej.DeviceDetectionStatus
 
swigValue() - Method in class mmcorej.DeviceInitializationState
 
swigValue() - Method in class mmcorej.DeviceNotification
 
swigValue() - Method in class mmcorej.DeviceType
 
swigValue() - Method in class mmcorej.FocusDirection
 
swigValue() - Method in class mmcorej.PortType
 
swigValue() - Method in class mmcorej.PropertyType
 
syntaxError(String) - Method in class mmcorej.org.json.JSONTokener
Make a JSONException to signal a syntax error.
systemBusy() - Method in class mmcorej.CMMCore
Checks the busy status of the entire system.

T

Test - Class in mmcorej.org.json
Test class.
Test() - Constructor for class mmcorej.org.json.Test
 
toArray() - Method in class mmcorej.BooleanVector
 
toArray() - Method in class mmcorej.CharVector
 
toArray() - Method in class mmcorej.DoubleVector
 
toArray() - Method in class mmcorej.LongVector
 
toArray() - Method in class mmcorej.StrVector
 
toArray() - Method in class mmcorej.UnsignedVector
 
ToArrayTag() - Method in class mmcorej.MetadataArrayTag
 
ToArrayTag() - Method in class mmcorej.MetadataTag
 
toJSONArray(String) - Static method in class mmcorej.org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string, using the first row as a source of names.
toJSONArray(JSONTokener) - Static method in class mmcorej.org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string, using the first row as a source of names.
toJSONArray(JSONArray, String) - Static method in class mmcorej.org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string using a supplied JSONArray as the source of element names.
toJSONArray(JSONArray, JSONTokener) - Static method in class mmcorej.org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string using a supplied JSONArray as the source of element names.
toJSONArray(JSONArray) - Method in class mmcorej.org.json.JSONObject
Produce a JSONArray containing the values of the members of this JSONObject.
toJSONObject(String) - Static method in class mmcorej.org.json.Cookie
Convert a cookie specification string into a JSONObject.
toJSONObject(String) - Static method in class mmcorej.org.json.CookieList
Convert a cookie list into a JSONObject.
toJSONObject(String) - Static method in class mmcorej.org.json.HTTP
Convert an HTTP header string into a JSONObject.
toJSONObject(JSONArray) - Method in class mmcorej.org.json.JSONArray
Produce a JSONObject by combining a JSONArray of names with the values of this JSONArray.
toJSONObject(String) - Static method in class mmcorej.org.json.XML
Convert a well-formed (but not necessarily valid) XML string into a JSONObject.
ToSingleTag() - Method in class mmcorej.MetadataSingleTag
 
ToSingleTag() - Method in class mmcorej.MetadataTag
 
toString() - Method in class mmcorej.ActionType
 
toString() - Method in class mmcorej.DeviceDetectionStatus
 
toString() - Method in class mmcorej.DeviceInitializationState
 
toString() - Method in class mmcorej.DeviceNotification
 
toString() - Method in class mmcorej.DeviceType
 
toString() - Method in class mmcorej.FocusDirection
 
toString(JSONArray) - Static method in class mmcorej.org.json.CDL
Produce a comma delimited text from a JSONArray of JSONObjects.
toString(JSONArray, JSONArray) - Static method in class mmcorej.org.json.CDL
Produce a comma delimited text from a JSONArray of JSONObjects using a provided list of names.
toString(JSONObject) - Static method in class mmcorej.org.json.Cookie
Convert a JSONObject into a cookie specification string.
toString(JSONObject) - Static method in class mmcorej.org.json.CookieList
Convert a JSONObject into a cookie list.
toString(JSONObject) - Static method in class mmcorej.org.json.HTTP
Convert a JSONObject into an HTTP header.
toString() - Method in class mmcorej.org.json.JSONArray
Make an JSON text of this JSONArray.
toString(int) - Method in class mmcorej.org.json.JSONArray
Make a prettyprinted JSON text of this JSONArray.
toString() - Method in class mmcorej.org.json.JSONObject
Make an JSON text of this JSONObject.
toString(int) - Method in class mmcorej.org.json.JSONObject
Make a prettyprinted JSON text of this JSONObject.
toString() - Method in class mmcorej.org.json.JSONStringer
Return the JSON text.
toString() - Method in class mmcorej.org.json.JSONTokener
Make a printable string of this JSONTokener.
toString(Object) - Static method in class mmcorej.org.json.XML
Convert a JSONObject into a well-formed, element-normal XML string.
toString(Object, String) - Static method in class mmcorej.org.json.XML
Convert a JSONObject into a well-formed, element-normal XML string.
toString() - Method in class mmcorej.PortType
 
toString() - Method in class mmcorej.PropertyType
 

U

Undef - Static variable in class mmcorej.PropertyType
 
unescape(String) - Static method in class mmcorej.org.json.Cookie
Convert %hh sequences to single characters, and convert plus to space.
Unimplemented - Static variable in class mmcorej.DeviceDetectionStatus
 
Unimplemented_get() - Static method in class mmcorej.MMCoreJJNI
 
Uninitialized - Static variable in class mmcorej.DeviceInitializationState
 
UnknownType - Static variable in class mmcorej.DeviceType
 
UnknownType_get() - Static method in class mmcorej.MMCoreJJNI
 
unloadAllDevices() - Method in class mmcorej.CMMCore
Unloads all devices from the core and resets all configuration data.
unloadDevice(String) - Method in class mmcorej.CMMCore
Unloads the device from the core and adjusts all configuration data.
unloadLibrary(String) - Method in class mmcorej.CMMCore
Forcefully unload a library.
UnsignedVector - Class in mmcorej
 
UnsignedVector(long, boolean) - Constructor for class mmcorej.UnsignedVector
 
UnsignedVector() - Constructor for class mmcorej.UnsignedVector
 
UnsignedVector(long) - Constructor for class mmcorej.UnsignedVector
 
UnsignedVector_add(long, UnsignedVector, long) - Static method in class mmcorej.MMCoreJJNI
 
UnsignedVector_capacity(long, UnsignedVector) - Static method in class mmcorej.MMCoreJJNI
 
UnsignedVector_clear(long, UnsignedVector) - Static method in class mmcorej.MMCoreJJNI
 
UnsignedVector_get(long, UnsignedVector, int) - Static method in class mmcorej.MMCoreJJNI
 
UnsignedVector_isEmpty(long, UnsignedVector) - Static method in class mmcorej.MMCoreJJNI
 
UnsignedVector_reserve(long, UnsignedVector, long) - Static method in class mmcorej.MMCoreJJNI
 
UnsignedVector_set(long, UnsignedVector, int, long) - Static method in class mmcorej.MMCoreJJNI
 
UnsignedVector_size(long, UnsignedVector) - Static method in class mmcorej.MMCoreJJNI
 
updateCoreProperties() - Method in class mmcorej.CMMCore
Updates CoreProperties (currently all Core properties are devices types) with the loaded hardware.
updateSystemStateCache() - Method in class mmcorej.CMMCore
Updates the state of the entire hardware.
USBPort - Static variable in class mmcorej.PortType
 
usesDeviceDelay(String) - Method in class mmcorej.CMMCore
Signals if the device will use the delay setting or not.

V

value(boolean) - Method in class mmcorej.org.json.JSONWriter
Append either the value true or the value false.
value(double) - Method in class mmcorej.org.json.JSONWriter
Append a double value.
value(long) - Method in class mmcorej.org.json.JSONWriter
Append a long value.
value(Object) - Method in class mmcorej.org.json.JSONWriter
Append an object value.

W

waitForConfig(String, String) - Method in class mmcorej.CMMCore
Blocks until all devices included in the configuration become ready.
waitForDevice(String) - Method in class mmcorej.CMMCore
Waits (blocks the calling thread) until the specified device becomes non-busy.
waitForDeviceType(DeviceType) - Method in class mmcorej.CMMCore
Blocks until all devices of the specific type become ready (not-busy).
waitForSystem() - Method in class mmcorej.CMMCore
Blocks until all devices in the system become ready (not-busy).
write(Writer) - Method in class mmcorej.org.json.JSONArray
Write the contents of the JSONArray as JSON text to a writer.
write(Writer) - Method in class mmcorej.org.json.JSONObject
Write the contents of the JSONObject as JSON text to a writer.
writer - Variable in class mmcorej.org.json.JSONWriter
The writer that will receive the output.
writeToSerialPort(String, CharVector) - Method in class mmcorej.CMMCore
Sends an array of characters to the serial port and returns immediately.

X

XML - Class in mmcorej.org.json
This provides static methods to convert an XML text into a JSONObject, and to covert a JSONObject into an XML text.
XML() - Constructor for class mmcorej.org.json.XML
 
XMLTokener - Class in mmcorej.org.json
The XMLTokener extends the JSONTokener to provide additional methods for the parsing of XML texts.
XMLTokener(String) - Constructor for class mmcorej.org.json.XMLTokener
Construct an XMLTokener from a string.
XYStageDevice - Static variable in class mmcorej.DeviceType
 

_

_DATABITS_5_get() - Static method in class mmcorej.MMCoreJJNI
 
_DATABITS_6_get() - Static method in class mmcorej.MMCoreJJNI
 
_DATABITS_7_get() - Static method in class mmcorej.MMCoreJJNI
 
_DATABITS_8_get() - Static method in class mmcorej.MMCoreJJNI
 
_FLOWCONTROL_NONE_get() - Static method in class mmcorej.MMCoreJJNI
 
_FLOWCONTROL_RTSCTS_IN_get() - Static method in class mmcorej.MMCoreJJNI
 
_FLOWCONTROL_RTSCTS_OUT_get() - Static method in class mmcorej.MMCoreJJNI
 
_FLOWCONTROL_XONXOFF_IN_get() - Static method in class mmcorej.MMCoreJJNI
 
_FLOWCONTROL_XONXOFF_OUT_get() - Static method in class mmcorej.MMCoreJJNI
 
_PARITY_EVEN_get() - Static method in class mmcorej.MMCoreJJNI
 
_PARITY_MARK_get() - Static method in class mmcorej.MMCoreJJNI
 
_PARITY_NONE_get() - Static method in class mmcorej.MMCoreJJNI
 
_PARITY_ODD_get() - Static method in class mmcorej.MMCoreJJNI
 
_PARITY_SPACE_get() - Static method in class mmcorej.MMCoreJJNI
 
_STOPBITS_1_5_get() - Static method in class mmcorej.MMCoreJJNI
 
_STOPBITS_1_get() - Static method in class mmcorej.MMCoreJJNI
 
_STOPBITS_2_get() - Static method in class mmcorej.MMCoreJJNI
 
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