Constructor Detail

• VentanaScannerInterpreter

  public VentanaScannerInterpreter(String imageFullPath,
                                   String thumbFullPath,
                                   String xmlFullPath)

Method Detail

• getFullSlideImage

  public ij.ImagePlus getFullSlideImage()

• getLowResScanImage

  public ij.ImagePlus getLowResScanImage()

• scaleROIStoLowresImage

  public ArrayList<ArrayList<Float>> scaleROIStoLowresImage()

• scaleROIStoLowresImage

  public static ArrayList<ArrayList<Float>> scaleROIStoLowresImage(ArrayList<ArrayList<Float>> rois,
                                                                   double[] zoomRatioXY)

• getUserSelectedZero

  public double[] getUserSelectedZero()

• getPPMofLowResImage

  public double[] getPPMofLowResImage()

• getZoomRatioXY

  public double[] getZoomRatioXY()

• getROIsList

  public ArrayList<ArrayList<Float>> getROIsList()

• interpretROISfromXML

  public ArrayList<ArrayList<Float>> interpretROISfromXML()

• interpretROISfromXML

  public static ArrayList<ArrayList<Float>> interpretROISfromXML(String xmlPath)

• removeNullFromString

  public static String removeNullFromString(String line)

• rotateClockwise90

  public static ArrayList<ArrayList<Float>> rotateClockwise90(ArrayList<ArrayList<Float>> vertices)