Constructor Detail

• AperioScannerInterpreter

  public AperioScannerInterpreter(String imageFullPath,
                                  String xmlFullPath)

Method Detail

• getNeededImageIndexes

  public boolean[] getNeededImageIndexes()

• getFullSlideImage

  public ij.ImagePlus getFullSlideImage()

• getLowResScanImage

  public ij.ImagePlus getLowResScanImage()

• scaleROIStoLowresImage

  public ArrayList<ArrayList<Float>> scaleROIStoLowresImage()

• openAperioImages

  public static ij.ImagePlus[] openAperioImages(String path,
                                                boolean[] seriesToOpen)
                                         throws IOException,
                                                FormatException

  Throws:

  IOException

  FormatException

• getUserSelectedZero

  public double[] getUserSelectedZero()

• getPPMofLowResImage

  public double[] getPPMofLowResImage()

• getZoomRatioXY

  public double[] getZoomRatioXY()

• getROIsList

  public ArrayList<ArrayList<Float>> getROIsList()

• interpretROISfromXML

  public ArrayList<ArrayList<Float>> interpretROISfromXML()

• interpretROISfromXML

  public static ArrayList<ArrayList<Float>> interpretROISfromXML(String xmlPath)