Index (alida 3.0.2 API)

A B C D E F G H I K L M N O P Q R S T U V W X Y

A

aboutIcon - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Icon to be shown in about box.
AbstrOpClassPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Default constructor.
accept(File) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
accept(File) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
accept(File) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionShowButton
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing.HashmapShowButton
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassShowButton
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuGraph
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorDocumentationFrame
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
actionPosition_x - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction: X-coordinate of the working area where action happened.
actionPosition_y - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction: Y-coordinate of the working area where action happened.
actionsOnWorkflow - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: List of actions performed on the Alida workflow object.
activateBatchMode - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Checkbox for enabling/disabling batch mode.
add(Class, AbstractList<Class>, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder
addALDConfigurationEventListener(ALDConfigurationEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
addALDConfigurationEventListener(ALDConfigurationEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter: Adds a listener to this reporter.
addALDControlEventListener(ALDControlEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
addALDControlEventListener(ALDControlEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter: Adds a listener to this reporter.
addALDOperatorCollectionEventListener(ALDOperatorCollectionEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Add an event listener for getting events when running operators.
addALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Adds a listener to this reporter.
addALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventReporter: Adds a listener to this reporter.
addALDWorkflowClassEventListener(ALDWorkflowClassEventListener) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add a listener for events thrown by the class ALDWorkflow (not an instance).
addALDWorkflowEventListener(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
addALDWorkflowEventListener(ALDWorkflowEventListener) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter: Adds a listener to this reporter.
addAttrToEdge(EdgeType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add an attribute to a graphml edge
addAttrToGraph(GraphType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add an attribute to a graphml graph
addAttrToGraphml(GraphmlType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add an attribute to a graphml element
addAttrToNode(NodeType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add an attribute to a graphml node
addAttrToPort(PortType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add an attribute to a graphml port
addBatchInputParameter(ALDParameterDescriptor, ButtonGroup, JComponent[][], int) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Add batch input mode parameter.
addButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Button to add an element.
addChild(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Add a child found during back tracing.
addCloseButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Adds set of control buttons to the input panel.
addCol - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Button for adding a column.
addContextSpecificButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Adds set of control buttons to the input panel.
addContextSpecificButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Adds set of control buttons to the input panel.
addData(ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Add a data port found during back tracing.
addDataPortToGraphml(GraphType, ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add a data port to the graphML graph
addDirectChild(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Add a directly registered child during invocation.
addEdge(GraphType, ALDPort, ALDPort, int) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add an graphml edge to graph with index idx
addEdge(ALDWorkflowEdge) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
addGraphmlHistory(GraphType, ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add the complete history of an object represented by a data port, which was read from a graphml file, to a graph object.
additionalOperators(ALDAOperator.Level) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: This method may be overridden in extending classes to add operators to the list of available operators.
addKey(GraphmlType, String, KeyForType.Enum, String, KeyTypeType.Enum) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: add a key definition to graphml
addNewWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Adds a new workflow (tab) to the workbench.
addNode(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add this node to the workflow, create a NodeId and update mapping.
addNodeToWorkflow(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
addOperatorExecutionProgressEventListener(ALDOperatorExecutionProgressEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Adds a listener to this reporter.
addOpNodePortToGraphml(GraphType, ALDOpNodePort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add a opNode port object to the graphML graph
addOpNodeToGraph(GraphType, ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add an opNode to the graph of the enclosing opNode.
addParameter(String, Object, Field, String, StringBuffer) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: Format the parameter name of the object obj into the buffer bufstr using formatString to determine formating.
addParameter(ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Add a parameter with the given descriptor to the operator.
addParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Add a parameter with the given name to the operator.
addParameter(String, Object, Field, String, ALDXMLParametrizedType) - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans: Format the parameter name of the object obj into the buffer bufstr using formatString to determine formating.
addParameterHash(NodeType, ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add the parameter hash to to a graphml node.
addParameterUnconditioned(ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Add a parameter descriptor to the operator without checks or updating of parameter hashes besides active parameters.
addPoint(Double, Double) - Method in class de.unihalle.informatik.Alida.demo.Extrema1D: Add an extremal point (x,y)
addPortsToNode(ALDOperator, mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Adds the ports of the operator's parameters to the given node.
addRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Button for adding a row.
addRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Button for adding a row.
addValueChangeEventListener(ALDSwingValueChangeListener) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter: Adds a listener to this reporter.
addXmlHistory(NodeType, XmlObject) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Add the complete history of a ALDData from a generic XML file to a graphml node.
ALD_EXTENSION - Static variable in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: File extension of Alida processing history files.
ALDAOperator - Annotation Type in de.unihalle.informatik.Alida.annotations: ALDOperators may be annotated with this annotation in order to enable generic execution or documentation facilities for the operator.
ALDAOperator.ExecutionMode - Enum in de.unihalle.informatik.Alida.annotations: Enumerates the different types of user interfaces to be automatically generated for this operator.
ALDAOperator.Level - Enum in de.unihalle.informatik.Alida.annotations: Enumerates the different levels of this operator.
ALDArrayMean - Class in de.unihalle.informatik.Alida.demo: Operator returning the mean value of an 1D array.
ALDArrayMean() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMean: Default constructor.
ALDArrayMean(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMean: Constructor.
ALDArrayMin - Class in de.unihalle.informatik.Alida.demo: Operator returning the minimum value of an 1D array.
ALDArrayMin() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMin: Default constructor.
ALDArrayMin(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMin: Constructor.
ALDArraySum - Class in de.unihalle.informatik.Alida.demo: Operator returning the sum of an 1D array.
ALDArraySum() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArraySum: Default constructor.
ALDArraySum(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArraySum: Constructor.
ALDBatchInputIterator - Interface in de.unihalle.informatik.Alida.batch.provider.input: Super class for all input providers in Alida batch mode.
ALDBatchInputIteratorSwing - Interface in de.unihalle.informatik.Alida.batch.provider.input.swing: Interface for Alida's automatic batch data I/O via GUIs based on Swing.
ALDBatchInputManager - Class in de.unihalle.informatik.Alida.batch: Class to manage data inputs in batch processing with operators.
ALDBatchInputManager() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchInputManager: Default constructor.
ALDBatchInputManagerSwing - Class in de.unihalle.informatik.Alida.batch: This class implements a batch provider mangager for batch processing in the context of graphical user interfaces.
ALDBatchInputManagerSwing() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Private constructor which inits the provider map.
ALDBatchInputManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.batch: Levels to enable/disable interactive provider behaviour.
ALDBatchInputNativeArray1DSwing - Class in de.unihalle.informatik.Alida.batch.provider.input.swing: Implementation of ALDBatchInputIteratorSwing for native 1D arrays.
ALDBatchInputNativeArray1DSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D - Class in de.unihalle.informatik.Alida.batch.provider.input.swing: Iterates row-wise over a 2D array.
ALDBatchInputNumberSwing - Class in de.unihalle.informatik.Alida.batch.provider.input.swing: Implementation of ALDBatchInputIteratorSwing for numbers and strings.
ALDBatchInputNumberSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D - Class in de.unihalle.informatik.Alida.batch.provider.input.swing: Iterates row-wise over a 2D array.
ALDBatchInputProvider - Annotation Type in de.unihalle.informatik.Alida.annotations: Annotation for classes acting as Alida batch input providers and implementing the ALDBatchInputIterator interface.
ALDBatchIOException - Exception in de.unihalle.informatik.Alida.exceptions: Exception thrown in batch mode data IO contexts.
ALDBatchIOException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOException
ALDBatchIOManagerException - Exception in de.unihalle.informatik.Alida.exceptions: Alida exception thrown by batch I/O managers.
ALDBatchIOManagerException(ALDBatchIOManagerException.ALDBatchIOManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException: Constructor.
ALDBatchIOManagerException.ALDBatchIOManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible exception types.
ALDBatchIOManagerExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException.ALDBatchIOManagerExceptionType
ALDBatchIOProviderException - Exception in de.unihalle.informatik.Alida.exceptions: Alida exception thrown by batch data IO providers.
ALDBatchIOProviderException(ALDBatchIOProviderException.ALDBatchIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException: Constructor.
ALDBatchIOProviderException.ALDBatchIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible exception types.
ALDBatchIOProviderExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException.ALDBatchIOProviderExceptionType
ALDBatchIteratorNativeArray1D(Object, Class<?>) - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D: Default constructor.
ALDBatchIteratorNativeArray1D(Object, Class<?>) - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D: Default constructor.
ALDBatchOperatorResultFrame - Class in de.unihalle.informatik.Alida.gui: Frame to display results of a batch run of an operator.
ALDBatchOperatorResultFrame(ALDOperator, HashMap<String, ALDBatchRunResultInfo>, ALDBatchOutputManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame: Constructor.
ALDBatchOutputManager - Class in de.unihalle.informatik.Alida.batch: Class to manage data outputs in batch processing with operators.
ALDBatchOutputManager() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager: Default constructor.
ALDBatchOutputManagerSwing - Class in de.unihalle.informatik.Alida.batch: This class implements a DataIO manager for summarizing batch results in the context of graphical user interfaces.
ALDBatchOutputManagerSwing() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Private constructor.
ALDBatchOutputManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.batch: Levels to enable/disable interactive provider behaviour.
ALDBatchOutputProvider - Annotation Type in de.unihalle.informatik.Alida.annotations: Annotation for classes acting as Alida batch output providers and implementing the ALDBatchOutputSummarizer interface.
ALDBatchOutputSummarizer - Interface in de.unihalle.informatik.Alida.batch.provider.output: Super class for all output summarizers in Alida batch mode.
ALDBatchOutputSummarizerSwing - Interface in de.unihalle.informatik.Alida.batch.provider.output.swing: Interface for Alida's automatic batch result data I/O via GUI based on Swing.
ALDBatchRunResultInfo - Class in de.unihalle.informatik.Alida.batch: Info object summarizing all result data of a batch run.
ALDBatchRunResultInfo() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo: Default constructor, should/can never be called from external.
ALDBatchRunResultInfo(String) - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo: Constructor.
ALDCalcMeanArray - Class in de.unihalle.informatik.Alida.demo: Operator for calculating the mean of given double values.
ALDCalcMeanArray() - Constructor for class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray: Default constructor.
ALDCalcMeanArray(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray: Constructor.
ALDChooseOpNameFrame - Class in de.unihalle.informatik.Alida.gui: Main window for selecting Alida annotated operators for running.
ALDChooseOpNameFrame() - Constructor for class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Constructor.
ALDChooseOpNameFrame.MyMouseAdapter - Class in de.unihalle.informatik.Alida.gui: Local MouseAdapter class.
ALDClassDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans: DataIO provider for enumerations xml using xmlbeans.
ALDClassDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDClassDataIOXmlbeans
ALDClassInfo - Class in de.unihalle.informatik.Alida.helpers
ALDClassInfo() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDClassInfo
ALDClassParameter - Annotation Type in de.unihalle.informatik.Alida.annotations: Member variables of classes annotated with ALDParametrizedClass may be annotated with this annotation to be automatically handled by Alida's data I/O.
ALDCollectionDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: DataIO provider for collections from command line.
ALDCollectionDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
ALDCollectionDataIOHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers: Class supplying support for generic loading/saving of Collections in Alida.
ALDCollectionDataIOHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDCollectionDataIOHelper
ALDCollectionDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for generic loading/saving of collections from/to GUI in Alida.
ALDCollectionDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
ALDCollectionDataIOSwing.CollectionConfigButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for configuring collections.
ALDCollectionDataIOSwing.CollectionConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Collection configuration window.
ALDCollectionDataIOSwing.CollectionShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for displaying collections.
ALDCollectionDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans: DataIO provider for collections xml using xmlbeans.
ALDCollectionDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
ALDConcReadWeakHashMap - Class in de.unihalle.informatik.Alida.helpers: A version of Hashtable that supports concurrent reading/exclusive writing.
ALDConcReadWeakHashMap(int, float) - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Constructs a new, empty map with the specified initial capacity and the specified load factor.
ALDConcReadWeakHashMap(int) - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Constructs a new, empty map with the specified initial capacity and default load factor.
ALDConcReadWeakHashMap() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Constructs a new, empty map with a default initial capacity and load factor.
ALDConcReadWeakHashMap.BarrierLock - Class in de.unihalle.informatik.Alida.helpers: A Serializable class for barrier lock.
ALDConfigurationEvent - Class in de.unihalle.informatik.Alida.operator.events: Event type to configure operator execution.
ALDConfigurationEvent(Object) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Constructor.
ALDConfigurationEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Constructor with message.
ALDConfigurationEventListener - Interface in de.unihalle.informatik.Alida.operator.events: Listener interface for `Alida` configuration events.
ALDConfigurationEventReporter - Interface in de.unihalle.informatik.Alida.operator.events: Interface for classes that generate events of type `ALDConfigurationEvent`.
ALDConfigurationValidator - Interface in de.unihalle.informatik.Alida.datatypes: A class implementing this interface provides methods to determine proper configuration of an object.
ALDControlEvent - Class in de.unihalle.informatik.Alida.operator.events: Event type for controlling operator threads.
ALDControlEvent(Object, ALDControlEvent.ALDControlEventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDControlEvent: Default constructor.
ALDControlEvent(Object, ALDControlEvent.ALDControlEventType, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDControlEvent: Default constructor with arguments.
ALDControlEvent.ALDControlEventType - Enum in de.unihalle.informatik.Alida.operator.events: Event types on which a controllable operator should react.
ALDControlEventListener - Interface in de.unihalle.informatik.Alida.operator.events: Listener interface for `Alida` control events.
ALDControlEventReporter - Interface in de.unihalle.informatik.Alida.operator.events: Interface for classes that generate events of type `ALDControlEvent`.
ALDControlEventType() - Constructor for enum de.unihalle.informatik.Alida.operator.events.ALDControlEvent.ALDControlEventType
ALDConverterManagerException() - Constructor for class de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDConverterManagerException
ALDData - Class in de.unihalle.informatik.Alida.operator: This is the abstract class from which all data classes have to be derived which want properties to be recored when returned from an operator as result.
ALDData() - Constructor for class de.unihalle.informatik.Alida.operator.ALDData: Create a data object.
ALDDataConverter - Interface in de.unihalle.informatik.Alida.dataconverter: Super class for all data converter providers in Alida.
ALDDataConverterException - Exception in de.unihalle.informatik.Alida.exceptions: Alida exception thrown by data type converters.
ALDDataConverterException(ALDDataConverterException.ALDDataIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException: Constructor.
ALDDataConverterException.ALDDataIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible exception types.
ALDDataConverterManager - Class in de.unihalle.informatik.Alida.dataconverter: This class implements a provider manager for data conversion.
ALDDataConverterManager() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Private constructor which initializes the provider map.
ALDDataConverterManager.ALDSourceTargetClassPair - Class in de.unihalle.informatik.Alida.dataconverter: A pair of source and target pair (of a converter)
ALDDataConverterManagerException - Exception in de.unihalle.informatik.Alida.exceptions
ALDDataConverterManagerException(ALDProviderManagerException.ALDProviderManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterManagerException
ALDDataConverterProvider - Annotation Type in de.unihalle.informatik.Alida.annotations: Annotation for classes acting as Alida data conversion provider and implementing the ALDDataConverter interface.
ALDDataIO - Interface in de.unihalle.informatik.Alida.dataio.provider: This is the interface for Alida's dataIO provider.
ALDDataIOCmdline - Interface in de.unihalle.informatik.Alida.dataio.provider: This is the interface for Alida's dataIO provider from command line.
ALDDataIOException - Exception in de.unihalle.informatik.Alida.exceptions: Exception thrown in data IO contexts.
ALDDataIOException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOException
ALDDataIOManager - Class in de.unihalle.informatik.Alida.dataio: Class to manage data input and output in Alida.
ALDDataIOManager() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManager: Default constructor.
ALDDataIOManagerCmdline - Class in de.unihalle.informatik.Alida.dataio: This class implements a DataIO manager for reading/writing from command line.
ALDDataIOManagerCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline: private constructor
ALDDataIOManagerException - Exception in de.unihalle.informatik.Alida.exceptions: Alida exception thrown by data IO managers.
ALDDataIOManagerException(ALDDataIOManagerException.ALDDataIOManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException: Constructor.
ALDDataIOManagerException.ALDDataIOManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible exception types.
ALDDataIOManagerExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException.ALDDataIOManagerExceptionType
ALDDataIOManagerSwing - Class in de.unihalle.informatik.Alida.dataio: This class implements a DataIO mangager for reading/writing from a graphical user interface written in Swing.
ALDDataIOManagerSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: private constructor
ALDDataIOManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.dataio: Levels to enable/disable interactive provider behaviour.
ALDDataIOManagerXmlbeans - Class in de.unihalle.informatik.Alida.dataio: This class implements a DataIO manager for reading/writing from xml using xmlbeans.
ALDDataIOManagerXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: private constructor
ALDDataIOProvider - Annotation Type in de.unihalle.informatik.Alida.annotations: Annotation for classes acting as Alida data I/O provider and implementing the ALDDataIO interface.
ALDDataIOProviderException - Exception in de.unihalle.informatik.Alida.exceptions: Alida exception thrown by data IO providers.
ALDDataIOProviderException(ALDDataIOProviderException.ALDDataIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException: Constructor.
ALDDataIOProviderException.ALDDataIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible exception types.
ALDDataIOProviderExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDDataConverterException.ALDDataIOProviderExceptionType
ALDDataIOProviderExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException.ALDDataIOProviderExceptionType
ALDDataIOSwing - Interface in de.unihalle.informatik.Alida.dataio.provider: Interface for Alida's automatic data I/O via GUIs based on Swing.
ALDDataIOSwingInitialGUIValueDefaultHandler - Class in de.unihalle.informatik.Alida.dataio.provider: Class providing default method for initial GUI value handling.
ALDDataIOSwingInitialGUIValueDefaultHandler() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwingInitialGUIValueDefaultHandler
ALDDataIOXmlbeans - Interface in de.unihalle.informatik.Alida.dataio.provider: This is the interface for Alida's dataIO provider from xml using xmlbeans.
ALDDataPort - Class in de.unihalle.informatik.Alida.operator: A data port acts as the reference for a data object in the processing history.
ALDDataPort(Object) - Constructor for class de.unihalle.informatik.Alida.operator.ALDDataPort: Create a data port for an object.
ALDDemoOpControllable - Class in de.unihalle.informatik.Alida.demo: Controllable demo operator for testing interaction.
ALDDemoOpControllable() - Constructor for class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable: Default constructor.
ALDDemoOpControllableHandle - Class in de.unihalle.informatik.Alida.demo: Controllable demo operator for testing interaction using the status handle.
ALDDemoOpControllableHandle() - Constructor for class de.unihalle.informatik.Alida.demo.ALDDemoOpControllableHandle: Default constructor.
ALDDerivedClass - Annotation Type in de.unihalle.informatik.Alida.annotations: Each Class annotated with this annotation will enable Alida's DataIO mechanism to find the class as extending another class.
ALDDirectoryString - Class in de.unihalle.informatik.Alida.datatypes: Class for representing a directory path.
ALDDirectoryString(String) - Constructor for class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString: Default constructor.
ALDDynamicOp - Class in de.unihalle.informatik.Alida.demo: Operator to test dynamic parameters and callback function.
ALDDynamicOp() - Constructor for class de.unihalle.informatik.Alida.demo.ALDDynamicOp: Default constructor.
ALDDynamicOpExtended - Class in de.unihalle.informatik.Alida.demo: Operator to test dynamic parameters and callback function.
ALDDynamicOpExtended() - Constructor for class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended: Default constructor.
ALDEdge - Class in de.unihalle.informatik.Alida.operator: This class is used to represent edges of the processing history during construction of the explicit history graph.
ALDEdge(ALDPort, ALDPort) - Constructor for class de.unihalle.informatik.Alida.operator.ALDEdge: Construct an edge for given source and target ports.
ALDEnumDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: DataIO provider for enumerations from command line.
ALDEnumDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
ALDEnumDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for generic loading/saving of enumerations via GUI in Alida.
ALDEnumDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
ALDEnumDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans: DataIO provider for enumerations xml using xmlbeans.
ALDEnumDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
ALDEnumSetDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: DataIO provider for EnumSets from command line.
ALDEnumSetDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumSetDataIOCmdline
ALDEnumSetDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for generic loading/saving of enum selections via GUI in Alida.
ALDEnumSetDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing
ALDEnumSetDataIOSwing.EnumSelectionConfigButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for configuring enum selections.
ALDEnumSetDataIOSwing.EnumSelectionConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Collection configuration window.
ALDEnumSetDataIOSwing.EnumSelectionShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for displaying enum selections.
ALDEnumSetDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans: DataIO provider for EnumSets xml using xmlbeans.
ALDEnumSetDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumSetDataIOXmlbeans
ALDEnvironmentConfig - Class in de.unihalle.informatik.Alida.helpers: Helper class to access environment variables and properties.
ALDEnvironmentConfig() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
ALDEvent - Class in de.unihalle.informatik.Alida.operator.events: Super class for all events used in `Alida`.
ALDEvent(Object) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDEvent: Default constructor for events.
ALDEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDEvent: Default constructor for events with messages.
ALDException - Exception in de.unihalle.informatik.Alida.exceptions: Abstract main class for exceptions in Alida.
ALDException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDException
ALDFileDirectoryDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: DataIO provider for filenames and directory paths from command line.
ALDFileDirectoryDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
ALDFileDirectoryDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for loading/saving file and directory paths via GUI.
ALDFileDirectoryDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI panel for IO of file and directory names.
ALDFileDirectoryDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans: DataIO provider for filenames and directory paths xml using xmlbeans.
ALDFileDirectoryDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
ALDFilePathManipulator - Class in de.unihalle.informatik.Alida.helpers: Class providing helpers to manipulate file and directory path names.
ALDFilePathManipulator() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
ALDFileString - Class in de.unihalle.informatik.Alida.datatypes: Class for representing a file path.
ALDFileString(String) - Constructor for class de.unihalle.informatik.Alida.datatypes.ALDFileString: Default constructor with file name.
ALDGrappaFrame - Class in de.unihalle.informatik.Alida.grappa: Main frame of Grappa graphical editor for Alida.
ALDGrappaFrame(Collection<ALDOperatorLocation>, Collection<ALDOperatorLocation>) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Default constructor
ALDGrappaFrame.ChooserTreeMouseAdapter - Class in de.unihalle.informatik.Alida.grappa: MouseListener for the operator tree.
ALDGrappaLinkDataIOSwing - Class in de.unihalle.informatik.Alida.grappa: Graphical component to represent Grappa links in Alida config windows.
ALDGrappaLinkDataIOSwing(String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
ALDGrappaLinkDataIOSwing.GrappaLinkTextField - Class in de.unihalle.informatik.Alida.grappa
ALDGrappaMenuBar - Class in de.unihalle.informatik.Alida.grappa: Menu bar for Grappa window.
ALDGrappaMenuBar(ALDGrappaFrame, ALDOperatorChooserTree, ALDGrappaWorkbench) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Default constructor
ALDGrappaNodeInfo - Class in de.unihalle.informatik.Alida.grappa: Serializable object attached to nodes in Grappa to store meta information.
ALDGrappaNodeInfo() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Default constructor.
ALDGrappaNodeInfo(String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Constructor with predefined name.
ALDGrappaNodeInfo(String, Integer) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Operator with predefined name and ID.
ALDGrappaNodePortInfo - Class in de.unihalle.informatik.Alida.grappa: Serializable object attached to node ports to store meta information.
ALDGrappaNodePortInfo(mxCell, ALDOpParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Default constructor.
ALDGrappaNodePortInfo() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
ALDGrappaRunner - Class in de.unihalle.informatik.Alida.tools: Main class for invoking Grappa from commandline in Alida context.
ALDGrappaRunner() - Constructor for class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
ALDGrappaWorkbench - Class in de.unihalle.informatik.Alida.grappa: Main frame of Grappa.
ALDGrappaWorkbench(ALDGrappaFrame) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Default constructor
ALDGrappaWorkbenchGraph - Class in de.unihalle.informatik.Alida.grappa: Graph class augmented for Grappa workflows.
ALDGrappaWorkbenchGraph() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph
ALDGrappaWorkbenchTab - Class in de.unihalle.informatik.Alida.grappa: Grappa workflow graph component.
ALDGrappaWorkbenchTab(ALDGrappaWorkbench, ALDGrappaWorkbenchGraph) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Default constructor.
ALDGrappaWorkbenchTab(ALDGrappaWorkbench, mxGraph, ALDWorkflow) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Constructor to setup tab from given (reloaded) workflow.
ALDGrappaWorkbenchTab.ContextMenuGraph - Class in de.unihalle.informatik.Alida.grappa: Context menu for whole workbench.
ALDGrappaWorkbenchTab.ContextMenuNodeEdge - Class in de.unihalle.informatik.Alida.grappa: Context menu for nodes and edges within a workflow.
ALDGrappaWorkbenchTab.GraphEventListener - Class in de.unihalle.informatik.Alida.grappa: Event handler for mxGraph events.
ALDGrappaWorkbenchTab.GraphKeyListener - Class in de.unihalle.informatik.Alida.grappa
ALDGrappaWorkbenchTab.GraphMouseAdapter - Class in de.unihalle.informatik.Alida.grappa: MouseListener for the workbench.
ALDGrappaWorkbenchTab.ParameterUpdateListener - Class in de.unihalle.informatik.Alida.grappa: Class to handle parameter update events triggered configuration windows.
ALDGrappaWorkbenchTab.WorkflowModifyAction - Class in de.unihalle.informatik.Alida.grappa
ALDGrappaWorkflowTabChangeEvent - Class in de.unihalle.informatik.Alida.grappa: Event data type to handle events happening in Grappa workflow tabs.
ALDGrappaWorkflowTabChangeEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent: Default constructor for events with messages.
ALDHashMapDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: Data I/O provider for hash maps on the command line.
ALDHashMapDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDHashMapDataIOCmdline
ALDHashMapDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for generic showing / saving of hash maps to GUI in Alida.
ALDHashMapDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing
ALDHashMapDataIOSwing.HashmapShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for displaying hash maps.
ALDIcon - Class in de.unihalle.informatik.Alida.helpers: Singleton class to provide access to Alida icon in graphical environments.
ALDIcon() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDIcon: Default constructor.
ALDInputPort - Class in de.unihalle.informatik.Alida.operator: Input port within an opNode.
ALDInputPort(ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDInputPort: Construct an input port within the given opNode with index idx and descriptorName as role of the port.
ALDInstantiationHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
ALDInstantiationHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDInstantiationHelper
ALDNativeArray1DDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for generic loading/saving of 1D-arrays from/to GUI in Alida.
ALDNativeArray1DDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing: Default constructor.
ALDNativeArray1DDataIOSwing.ArrayConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for configuring 1D arrays of native data types and wrapper.
ALDNativeArray1DDataIOSwing.ArrayConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Graphical user interface window for displaying tables.
ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Internal class that implements a FileFilter for text files where MiToBo table data is stored.
ALDNativeArray1DDataIOSwing.ArrayConfigWindow.TableFocusListener - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Focus listener to commit edits if table looses the focus.
ALDNativeArray1DDataIOSwing.ArrayShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for displaying 2D arrays.
ALDNativeArray2DDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for generic loading/saving of 2D-arrays from/to GUI in Alida.
ALDNativeArray2DDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing: Default constructor.
ALDNativeArray2DDataIOSwing.ArrayConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for configuring collections.
ALDNativeArray2DDataIOSwing.ArrayConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Graphical user interface window for displaying objects of class DefaultTableModel.
ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Internal class that realizes a FileFilter for text files where MiToBo table data is stored.
ALDNativeArray2DDataIOSwing.ArrayConfigWindow.TableFocusListener - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Focus listener to commit edits if table looses the focus.
ALDNativeArray2DDataIOSwing.ArrayShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for displaying 2D arrays.
ALDNativeDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: DataIO provider for primitive datatypes, Java wrapper types, and arrays (1D and 2D) from comamand line.
ALDNativeDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
ALDNativeDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for loading/saving primitive datatypes in Alida.
ALDNativeDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
ALDNativeDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans: DataIO provider for primitive datatypes, Java wrapper types, and arrays (1D and 2D) xml using xmlbeans.
ALDNativeDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
ALDNumberConverter - Class in de.unihalle.informatik.Alida.dataconverter: Converts numbers.
ALDNumberConverter() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter: Default constructor.
ALDOperator - Class in de.unihalle.informatik.Alida.operator: This is the abstract super class for all Alida operators.
ALDOperator() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperator: This constructor initializes an operator.
ALDOperator.DescriptorComparator - Class in de.unihalle.informatik.Alida.operator
ALDOperator.HidingMode - Enum in de.unihalle.informatik.Alida.operator: Determines the visibility of an operator invocation via runOp() in the processing history.
ALDOperator.HistoryConstructionMode - Enum in de.unihalle.informatik.Alida.operator: Mode of implicit construction of the processing graph.
ALDOperatorChooserTree - Class in de.unihalle.informatik.Alida.gui: This class extends JTree to hold ALDOperators to choose from.
ALDOperatorChooserTree(Collection<ALDOperatorLocation>, Collection<ALDOperatorLocation>) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Constructor.
ALDOperatorChooserTree.AlidaOpTreeCellRenderer - Class in de.unihalle.informatik.Alida.gui: Treerender for displaying the operator short descriptions as tool tips.
ALDOperatorChooserTree.AuxNode - Class in de.unihalle.informatik.Alida.gui: Node to build up a tree of the package structure of ALDOperators.
ALDOperatorChooserTreeNode - Class in de.unihalle.informatik.Alida.gui: Class for managing nodes of the tree view.
ALDOperatorChooserTreeNode(String, ALDOperatorLocation) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode: constructor
ALDOperatorCollection<T extends ALDOperatorCollectionElement> - Class in de.unihalle.informatik.Alida.operator: Class to manage a set of operators.
ALDOperatorCollection(Class<T>) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Default constructor.
ALDOperatorCollection.OperatorExecutionProxy - Class in de.unihalle.informatik.Alida.operator: Manager class for (threaded) execution of operators of a collection.
ALDOperatorCollection.ParameterUpdateListener - Class in de.unihalle.informatik.Alida.operator: Listener class to react on parameter value updates in config window.
ALDOperatorCollectionElement - Class in de.unihalle.informatik.Alida.operator: Base class for operator classes managed by ALDOperatorCollection.
ALDOperatorCollectionElement() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorCollectionElement: Default constructor.
ALDOperatorCollectionEvent - Class in de.unihalle.informatik.Alida.operator.events: Event class related to ALDOperatorCollection.
ALDOperatorCollectionEvent(Object, ALDOperatorCollectionEvent.ALDOperatorCollectionEventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Constructor.
ALDOperatorCollectionEvent(Object, ALDOperatorCollectionEvent.ALDOperatorCollectionEventType, ALDOperatorCollectionEventInfo) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Constructor.
ALDOperatorCollectionEvent(Object, ALDOperatorCollectionEvent.ALDOperatorCollectionEventType, String, ALDOperatorCollectionEventInfo) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Constructor.
ALDOperatorCollectionEvent(ALDOperatorCollectionEvent) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Copy constructor.
ALDOperatorCollectionEvent.ALDOperatorCollectionEventType - Enum in de.unihalle.informatik.Alida.operator.events: Types of events.
ALDOperatorCollectionEventInfo - Class in de.unihalle.informatik.Alida.operator.events: This class holds information related to events in the context of ALDOperatorCollection.
ALDOperatorCollectionEventInfo(Exception) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventInfo: Default constructor.
ALDOperatorCollectionEventInfo(Exception, ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventInfo: Constructor with arguments.
ALDOperatorCollectionEventListener - Interface in de.unihalle.informatik.Alida.operator.events: Listener interface for `Alida` operator collection events.
ALDOperatorCollectionEventType() - Constructor for enum de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent.ALDOperatorCollectionEventType
ALDOperatorConfigurationFrame - Class in de.unihalle.informatik.Alida.gui: Frame to configure an operator.
ALDOperatorConfigurationFrame(ALDOperator, ALDOpParameterUpdateEventListener) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Constructs a control frame for an operator object.
ALDOperatorControlFrame - Class in de.unihalle.informatik.Alida.gui: Frame to configure and run an operator.
ALDOperatorControlFrame(ALDOperator, ALDOperatorGUIExecutionProxy, ALDOpParameterUpdateEventListener) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Constructs a new control frame for an operator object.
ALDOperatorControllable - Class in de.unihalle.informatik.Alida.operator: Operator class with inherent event handling for execution control.
ALDOperatorControllable() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Default constructor.
ALDOperatorControllable.OperatorControlStatus - Enum in de.unihalle.informatik.Alida.operator: Commands for controlling the operator.
ALDOperatorControllable.OperatorControlStatusHandle - Class in de.unihalle.informatik.Alida.operator: Wrapper class for control status information.
ALDOperatorControllable.OperatorExecutionStatus - Enum in de.unihalle.informatik.Alida.operator: Actual operator status.
ALDOperatorDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Data IO provider for operators in GUI.
ALDOperatorDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: Default constructor.
ALDOperatorDataIOSwing.OperatorConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for configuring a single operator.
ALDOperatorDataIOSwing.OperatorConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Configuration window for operator.
ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Element for handling operator inheritance hierarchies in configuration.
ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element class for parametrized class parameters.
ALDOperatorDataIOSwing.OperatorShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element for displaying configuration of a single operator.
ALDOperatorDocumentationFrame - Class in de.unihalle.informatik.Alida.gui: Frame to show documentation for operators and tools.
ALDOperatorDocumentationFrame(String, String, String) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorDocumentationFrame: Constructor with title parameter.
ALDOperatorException - Exception in de.unihalle.informatik.Alida.exceptions: Exception mainly thrown by ALDOperator in case of failures.
ALDOperatorException(ALDOperatorException.OperatorExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException: Constructor.
ALDOperatorException.OperatorExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible operator exception types.
ALDOperatorExecutionProgressEvent - Class in de.unihalle.informatik.Alida.operator.events: Event type to reflect progress of operator execution.
ALDOperatorExecutionProgressEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent: Constructor with message.
ALDOperatorExecutionProgressEvent(Object, String, ALDOperator) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent: Constructor with message.
ALDOperatorExecutionProgressEventListener - Interface in de.unihalle.informatik.Alida.operator.events: Listener interface for `Alida` progress of operator execution events.
ALDOperatorGUIExecutionProxy - Class in de.unihalle.informatik.Alida.gui: Manager for executing single operator and workflow objects via GUI.
ALDOperatorGUIExecutionProxy(ALDOperatorLocation) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Default constructor.
ALDOperatorGUIExecutionProxy.ParameterUpdateListener - Class in de.unihalle.informatik.Alida.gui: Listener class to react on parameter value updates in config window.
ALDOperatorGUIExecutionProxy.WorkflowThreadStatus - Enum in de.unihalle.informatik.Alida.gui: Status of the associated thread to execute operator.
ALDOperatorLocation - Class in de.unihalle.informatik.Alida.operator
ALDOperatorLocation() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: Default constructor, should never be called directly!
ALDOperatorLocation.LocationType - Enum in de.unihalle.informatik.Alida.operator
ALDOperatorLocationType - Interface in de.unihalle.informatik.Alida.operator: Describes different types of location from which an ALDOperator may be instantiated.
ALDOperatorParamDisplayFrame - Class in de.unihalle.informatik.Alida.gui: Frame to display the operator configuration used to calculate results.
ALDOperatorParamDisplayFrame(ALDOperator, ALDDataIOManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame: Constructor.
ALDOperatorParameterPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Panel to hold graphical elements for configuring an operator.
ALDOperatorParameterPanel(ALDOperator, Parameter.ExpertMode, boolean, ALDSwingValueChangeListener) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Default constructor.
ALDOperatorParameterPanel.ParameterType - Enum in de.unihalle.informatik.Alida.dataio.provider.swing.components: Types of parameters appearing in Alida's operator concept.
ALDOperatorResultFrame - Class in de.unihalle.informatik.Alida.gui: Frame with result data displayed on termination of an operator run.
ALDOperatorResultFrame(String, ALDOperator, ALDDataIOManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame: Constructor with title parameter.
ALDOperatorResultFrame(ALDOperator, ALDDataIOManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame: Constructor.
ALDOpNode - Class in de.unihalle.informatik.Alida.operator: Each instance of this class represents an operator invocation for the implicit processing graph.
ALDOpNode(ALDOperator, ALDOperator.HidingMode) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpNode: Construct an ALDOpNode for the operator op and hidingMode
ALDOpNodePort - Class in de.unihalle.informatik.Alida.operator: Abstract class for ports residing within opNodes.
ALDOpNodePort(String, ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Create a port for an opNode with given index within this opNode and type.
ALDOpParameterDescriptor - Class in de.unihalle.informatik.Alida.operator: This class describes the parameters of an operator.
ALDOpParameterDescriptor() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
ALDOpParameterDescriptor(String, Parameter.Direction, Boolean, Class<?>, String, String, boolean, Field, int, Parameter.ExpertMode, Boolean, String, Parameter.ParameterModificationMode, boolean) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Construct a descriptor
ALDOpParameterUpdateEvent - Class in de.unihalle.informatik.Alida.operator.events: Event type for updates of operator parameters.
ALDOpParameterUpdateEvent(Object, ALDOpParameterUpdateEvent.EventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent: Constructor with message and type.
ALDOpParameterUpdateEvent(Object, String, ALDOpParameterUpdateEvent.EventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent: Constructor with message and type.
ALDOpParameterUpdateEvent.EventType - Enum in de.unihalle.informatik.Alida.operator.events: Possible types of events.
ALDOpParameterUpdateEventListener - Interface in de.unihalle.informatik.Alida.operator.events: Listener interface for `Alida` parameter update events.
ALDOpParameterUpdateEventReporter - Interface in de.unihalle.informatik.Alida.operator.events: Interface for classes generating events of type ALDOpParameterUpdateEvent.
ALDOpRunner - Class in de.unihalle.informatik.Alida.tools: Generic commandline interface to run an Alida operator.
ALDOpRunner(String[]) - Constructor for class de.unihalle.informatik.Alida.tools.ALDOpRunner: Construct a ALDOpRunner using args
ALDOpRunnerGUI - Class in de.unihalle.informatik.Alida.tools: Generic graphical user interface to run Alida operators.
ALDOpRunnerGUI() - Constructor for class de.unihalle.informatik.Alida.tools.ALDOpRunnerGUI
ALDOutputPort - Class in de.unihalle.informatik.Alida.operator: Output port within an opNode.
ALDOutputPort(ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOutputPort: Construct an output port within the given opNode with index idx and descriptorName as role of the port.
ALDParameterDescriptor - Class in de.unihalle.informatik.Alida.operator: This class describes generic parameters in Alida used, e.g., in parameterized classes and operators.
ALDParameterDescriptor() - Constructor for class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
ALDParameterDescriptor(String, Class<?>, String, String, boolean, Field, int, Parameter.ExpertMode, String, Parameter.ParameterModificationMode, boolean) - Constructor for class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Constructor.
ALDParameterPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Class for configuring sets of parameters via GUI in Alida.
ALDParameterPanel(ALDParameterPanelParent, LinkedList<? extends ALDParameterDescriptor>, String, boolean, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Default constructor.
ALDParameterPanelParent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Parent class for all GUI components making use of ALDParameterPanel.
ALDParameterPanelParent() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanelParent
ALDParameterTester - Class in de.unihalle.informatik.Alida.demo: Dummy operator class for demo and testing of input parameter types.
ALDParameterTester() - Constructor for class de.unihalle.informatik.Alida.demo.ALDParameterTester: Default constructor.
ALDParameterTester.EnumSelection - Enum in de.unihalle.informatik.Alida.demo
ALDParameterWrapper - Class in de.unihalle.informatik.Alida.operator: This class is a wrapper for all parameters of a ALDOperator.
ALDParameterWrapper(ALDOperator) - Constructor for class de.unihalle.informatik.Alida.operator.ALDParameterWrapper: Create an instance for the parameters of op
ALDParametrizedClass - Annotation Type in de.unihalle.informatik.Alida.annotations: Classes annotated by this annotation are handle by Alida's DataIO.
ALDParametrizedClassConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Configuration window for parametrized class objects.
ALDParametrizedClassConfigWindow(Class<?>, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Default constructor.
ALDParametrizedClassConfigWindow(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Default constructor.
ALDParametrizedClassConfigWindow(Object, ALDParameterDescriptor, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Default constructor.
ALDParametrizedClassDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: DataIO provider for parametrized classes and operators from command line.
ALDParametrizedClassDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
ALDParametrizedClassDataIOHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers: Helper class to configure and handle parametrized class objects.
ALDParametrizedClassDataIOHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
ALDParametrizedClassDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Class for generic handling of parameterized classes in GUI.
ALDParametrizedClassDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing: Default constructor.
ALDParametrizedClassDataIOSwing.ParametrizedClassPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing: GUI element class for parametrized class parameters.
ALDParametrizedClassDataIOSwing.ParametrizedClassShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing: Button to visualize parametrized class objects.
ALDParametrizedClassDataIOXmlbeans - Class in de.unihalle.informatik.Alida.operator: DataIO provider for parametrized classes and operators for xml representation.
ALDParametrizedClassDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
ALDParametrizedClassDummy - Class in de.unihalle.informatik.Alida.dataio.provider.helpers: This class only serves as a proxy for Alida's dataIO system to look up DataIO providers for parametrized classes.
ALDParametrizedClassDummy() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDummy
ALDParser - Class in de.unihalle.informatik.Alida.helpers: Helper class for parsing/formatting objects for data I/O in Alida.
ALDParser() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDParser
ALDPort - Class in de.unihalle.informatik.Alida.operator: This is the abstract super class of all ports which act as proxies to receive or supply objects within a processing graph.
ALDPort(String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDPort: Construct a port object
ALDPortHash - Class in de.unihalle.informatik.Alida.operator: Hashmap keeping links between objects and data ports in processing history.
ALDPortHash() - Constructor for class de.unihalle.informatik.Alida.operator.ALDPortHash: Constructor without function.
ALDPortHashAccess - Class in de.unihalle.informatik.Alida.operator: Interface to the port hash map of Alida.
ALDPortHashAccess() - Constructor for class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Constructor without function.
ALDProcessingDAG - Class in de.unihalle.informatik.Alida.operator: This class handles the construction of a processing DAG from opNode instances and writing this processing history as extended graphml to file.
ALDProcessingDAG() - Constructor for class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
ALDProcessingDAG.HistoryType - Enum in de.unihalle.informatik.Alida.operator: Type of the processing history to be generated.
ALDProcessingDAGException - Exception in de.unihalle.informatik.Alida.exceptions: Exception thrown in context of history graph reconstruction.
ALDProcessingDAGException(ALDProcessingDAGException.DAGExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException: Constructor.
ALDProcessingDAGException.DAGExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible graph exception types.
ALDProviderManagerException - Exception in de.unihalle.informatik.Alida.exceptions: Alida exception thrown by batch I/O managers.
ALDProviderManagerException(ALDProviderManagerException.ALDProviderManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException: Constructor.
ALDProviderManagerException.ALDConverterManagerException - Class in de.unihalle.informatik.Alida.exceptions
ALDProviderManagerException.ALDProviderManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions: Possible exception types.
ALDProviderManagerExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDProviderManagerExceptionType
ALDSourceTargetClassPair(Class<?>, Class<?>) - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
ALDStandardizedDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline: Abstract class providing basic methods for cmdline DataIO providers according to Alida conventions.
ALDStandardizedDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
ALDStandardizedDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
ALDStandardizedDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
ALDSummarizeArrayOp - Class in de.unihalle.informatik.Alida.demo: A abstract summarizing operator taking a 1D array as input and return a summarizing scalar.
ALDSummarizeArrayOp() - Constructor for class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp: Default constructor.
ALDSummarizerNativeArray1DSwing - Class in de.unihalle.informatik.Alida.batch.provider.output.swing: Implementation of ALDBatchOutputSummarizerSwing for native 1D arrays.
ALDSummarizerNativeArray1DSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing: Default constructor.
ALDSummarizerNativeDataSwing - Class in de.unihalle.informatik.Alida.batch.provider.output.swing: Implementation of ALDBatchOutputSummarizerSwing for native data.
ALDSummarizerNativeDataSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeDataSwing
ALDSwingComponent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Class defining Alida-specific Swing GUI components.
ALDSwingComponent() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
ALDSwingComponentCheckBox - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Alida-specific Swing component linked to a JCheckBox.
ALDSwingComponentCheckBox(ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox: Default constructor.
ALDSwingComponentComboBox - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Alida-specific Swing component linked to a JComboBox.
ALDSwingComponentComboBox(ALDParameterDescriptor, Vector<ALDSwingComponentItem>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox: Default constructor.
ALDSwingComponentComboBox.ComboBoxTooltipRenderer - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Tooltip renderer class, adds a tooltip to each item in the combobox.
ALDSwingComponentItem - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Alida-specific combobox item linked to a ALDSwingComponentComboBox.
ALDSwingComponentItem(Object, String, String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem: Default constructor.
ALDSwingComponentLabel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Alida-specific Swing component linked to a JLabel.
ALDSwingComponentLabel(String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel: Default constructor.
ALDSwingComponentList - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Alida-specific Swing component linked to a JList.
ALDSwingComponentList(ALDParameterDescriptor, Vector<ALDSwingComponentItem>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Default constructor.
ALDSwingComponentTextField - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Alida-specific Swing component linked to a JTextField.
ALDSwingComponentTextField(Class<?>, ALDParameterDescriptor, int) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Default constructor.
ALDSwingValueChangeEvent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.events: Event type for reporting changes of values in provider GUI elements.
ALDSwingValueChangeEvent(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent: Default constructor.
ALDSwingValueChangeEvent(Object, ALDParameterDescriptor, String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent: Default constructor with arguments.
ALDSwingValueChangeListener - Interface in de.unihalle.informatik.Alida.dataio.provider.swing.events: Listener interface for change value events reported by provider GUI elements.
ALDSwingValueChangeReporter - Class in de.unihalle.informatik.Alida.dataio.provider.swing.events: Reporter interface for change value events in Alida Swing GUI components.
ALDSwingValueChangeReporter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
ALDTableWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: GUI window for displaying tables in Alida.
ALDTableWindow(DefaultTableModel) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Default constructor.
ALDTableWindow(DefaultTableModel, Object) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Default constructor.
ALDTableWindow.DataTabFileFilter - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Internal class that realizes a FileFilter for text files where MiToBo table data is stored.
ALDTableWindow.TableConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components: Window class for configuring the table appearance and export.
ALDTableWindow.TableModelDelimiter - Enum in de.unihalle.informatik.Alida.dataio.provider.swing.components: Delimiters available when writing a model to a string or file.
ALDToplevelOperator - Class in de.unihalle.informatik.Alida.operator: This class is just a dummy opNode acting as the first opNode with the stack of active opNodes of each thread.
ALDToplevelOperator() - Constructor for class de.unihalle.informatik.Alida.operator.ALDToplevelOperator: Construct a (dummy) top level opNode
ALDTransposeMatrix - Class in de.unihalle.informatik.Alida.demo: Operator for transposing matrices.
ALDTransposeMatrix() - Constructor for class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix: Default constructor.
ALDTransposeMatrix(int[][]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix: Constructor.
ALDVectorNativeArrayConverter - Class in de.unihalle.informatik.Alida.dataconverter: Converts 1D arrays of native data types to Vector data types.
ALDVectorNativeArrayConverter() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter: Default constructor.
ALDVersionProvider - Class in de.unihalle.informatik.Alida.version: Info class providing version information for auto-documentation.
ALDVersionProvider() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProvider
ALDVersionProviderCmdLine - Class in de.unihalle.informatik.Alida.version: Info class providing version information parsed from commandline.
ALDVersionProviderCmdLine() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderCmdLine
ALDVersionProviderDummy - Class in de.unihalle.informatik.Alida.version: Dummy version info class always returning "unknown" as version.
ALDVersionProviderDummy() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderDummy
ALDVersionProviderFactory - Class in de.unihalle.informatik.Alida.version: Factory for dynamic instantiation of version providers at runtime.
ALDVersionProviderFactory() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
ALDVersionProviderGit - Class in de.unihalle.informatik.Alida.version: Version provider to extract version information from local Git repository.
ALDVersionProviderGit() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
ALDVersionProviderReleaseJar - Class in de.unihalle.informatik.Alida.version: Info class which provides Alida operators with version information from a version file distributed with the release jar archive.
ALDVersionProviderReleaseJar() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
ALDWeakHashMapEntry - Class in de.unihalle.informatik.Alida.helpers: Weak reference hashmap entry.
ALDWeakHashMapEntry(int, Object, Object, ALDWeakHashMapEntry, ReferenceQueue<Object>) - Constructor for class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Constructor.
ALDWorkflow - Class in de.unihalle.informatik.Alida.workflows: Class to model a workflow in Alida.
ALDWorkflow(String) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Constructor for a workflow in a grappa context.
ALDWorkflow(String, ALDWorkflow.ALDWorkflowContextType) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Constructor
ALDWorkflow() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Constructor for an untitled workflow in a grappa context.
ALDWorkflow(ALDWorkflow.ALDWorkflowContextType) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Constructor for an untitled workflow
ALDWorkflow.ALDWorkflowContextType - Enum in de.unihalle.informatik.Alida.workflows: workflow context types.
ALDWorkflow.COMPATIBILITY - Enum in de.unihalle.informatik.Alida.workflows
ALDWorkflow.ExecuteThread - Class in de.unihalle.informatik.Alida.workflows: This thread executes all non-ready nodes in the given order.
ALDWorkflowClassEvent - Class in de.unihalle.informatik.Alida.workflows.events: Event type related to Alida work flows.
ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent: Constructor.
ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent: Constructor.
ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType, String, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent: Constructor.
ALDWorkflowClassEvent.ALDWorkflowClassEventType - Enum in de.unihalle.informatik.Alida.workflows.events: Types of events.
ALDWorkflowClassEventListener - Interface in de.unihalle.informatik.Alida.workflows.events: Listener interface for `Alida` workflow events.
ALDWorkflowClassEventType() - Constructor for enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent.ALDWorkflowClassEventType
ALDWorkflowContextType() - Constructor for enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.ALDWorkflowContextType
ALDWorkflowDataIOXmlbeans - Class in de.unihalle.informatik.Alida.workflows: DataIO provider for ALDWorkflow from xml using xmlbeans.
ALDWorkflowDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
ALDWorkflowEdge - Class in de.unihalle.informatik.Alida.workflows: This class represents an edge within an work flow.
ALDWorkflowEdge(ALDWorkflowNode, String, ALDWorkflowNode, String) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Create an edge with the given source and target.
ALDWorkflowEdgeID - Class in de.unihalle.informatik.Alida.workflows: Class to index a work flow edge
ALDWorkflowEdgeID() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdgeID: Create a new edge is
ALDWorkflowEvent - Class in de.unihalle.informatik.Alida.workflows.events: Event type related to Alida work flows.
ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Constructor.
ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Constructor.
ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType, String, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Constructor.
ALDWorkflowEvent(ALDWorkflowEvent) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Constructor.
ALDWorkflowEvent.ALDWorkflowEventType - Enum in de.unihalle.informatik.Alida.workflows.events: Types of events.
ALDWorkflowEventListener - Interface in de.unihalle.informatik.Alida.workflows.events: Listener interface for `Alida` workflow events.
ALDWorkflowEventManager - Class in de.unihalle.informatik.Alida.workflows
ALDWorkflowEventManager(ALDWorkflowEventListener) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
ALDWorkflowEventReporter - Interface in de.unihalle.informatik.Alida.workflows.events: Interface for classes that generate events of type ALDWorkflowEvent.
ALDWorkflowEventType() - Constructor for enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent.ALDWorkflowEventType
ALDWorkflowException - Exception in de.unihalle.informatik.Alida.exceptions: Exception mainly thrown by ALDWorkflow in case of failures.
ALDWorkflowException(ALDWorkflowException.WorkflowExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException: Constructor.
ALDWorkflowException.WorkflowExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
ALDWorkflowHelper - Class in de.unihalle.informatik.Alida.workflows
ALDWorkflowHelper() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper
ALDWorkflowID - Class in de.unihalle.informatik.Alida.workflows: Class to index a work flow object.
ALDWorkflowID(Integer) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowID: Create an id object.
ALDWorkflowNode - Class in de.unihalle.informatik.Alida.workflows: This class represents a node in an Alida work flow.
ALDWorkflowNode(ALDWorkflow, ALDOperator) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Create a node
ALDWorkflowNode(ALDWorkflow, ALDOperator, boolean) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Create a node
ALDWorkflowNode.ALDWorkflowNodeState - Enum in de.unihalle.informatik.Alida.workflows
ALDWorkflowNodeID - Class in de.unihalle.informatik.Alida.workflows: Class to index a work flow node.
ALDWorkflowNodeID() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNodeID: Create a new node id.
ALDWorkflowNodeState() - Constructor for enum de.unihalle.informatik.Alida.workflows.ALDWorkflowNode.ALDWorkflowNodeState
ALDWorkflowRunFailureInfo - Class in de.unihalle.informatik.Alida.workflows.events: This class holds information related to a run failure event
ALDWorkflowRunFailureInfo(Exception, ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
ALDWorkflowRunFailureInfo(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
ALDWorkflowStorageInfo - Class in de.unihalle.informatik.Alida.workflows.events
ALDWorkflowStorageInfo(String, ALDWorkflow) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
alidaIcon - Variable in class de.unihalle.informatik.Alida.helpers.ALDIcon: The icon by itself.
AlidaOpTreeCellRenderer() - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AlidaOpTreeCellRenderer
alidaWorkflow - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Reference to the underlying Alida workflow object.
alidaWorkflow - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Reference to the underlying Alida workflow object.
alidaWorkflow - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Reference to the underlying Alida workflow object.
allDataports - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
allEdges - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
allInstances - Static variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
allOpNodes - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
allowAdditionalFields - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: If true additional fields/variables and so on should be tolerated by providers
allowedClassForIO(Class<?>) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Is this class allowed as Input and/or Output?
applicationLocations - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
applicationTreeModel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Tree of available operators for standard level.
ApplyToMatrix - Class in de.unihalle.informatik.Alida.demo: Demo operator to apply a summarizing operation to a 2D array in row or column wise fashion.
ApplyToMatrix() - Constructor for class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Default constructor.
ApplyToMatrix(Double[][]) - Constructor for class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Constructor.
ApplyToMatrix.SummarizeMode - Enum in de.unihalle.informatik.Alida.demo: Choose row or colum wise sum
ApproachMax() - Constructor for class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMax
ApproachMin() - Constructor for class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMin
args - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: command line arguments.
args - Variable in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: command line arguments.
array_Intege_2D - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
array_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
array_String - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
array_String_2D - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
arrayClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Class of array to configure.
arrayClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Class of array to configure.
ArrayConfigPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Constructor.
ArrayConfigPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Constructor.
ArrayConfigWindow(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Default constructor.
ArrayConfigWindow(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Default constructor.
arrayDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Descriptor of parameter linked to array.
arrayDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Descriptor of parameter linked to array.
arrayField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Parameter field of array to configure.
arrayField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Parameter field of array to configure.
arrayRows - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D: Number of rows in array.
arrayRows - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D: Number of rows in array.
ArrayShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton: Constructor.
ArrayShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton: Constructor.
arrayToString(Object) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser: Formats an array according to Alida data I/O conventions.
AuxNode(ALDOperatorLocation) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode: Constructor.
AuxNode() - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode: Default constructor.
availableClasses - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: List of available classes.
availableClasses - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: List of available classes.
availableClasses - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Set of available operator classes.

B

barrierLock - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Lock used only for its memory effects.
BarrierLock() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap.BarrierLock
baseline - Variable in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D: The baseline detected
baseline - Variable in class de.unihalle.informatik.Alida.demo.DetectBaseline1D: The baseline detected
Baseline1D - Class in de.unihalle.informatik.Alida.demo: This class holds a baseline for 1D data which essentially is a straight line as a 1D function.
Baseline1D() - Constructor for class de.unihalle.informatik.Alida.demo.Baseline1D: Standard constructor is required
Baseline1D(Double, Double) - Constructor for class de.unihalle.informatik.Alida.demo.Baseline1D
baselineCorrected - Variable in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Are the data baseline corrected?
batchConfigPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Configuration panel for batch mode.
batchInputIterator - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Iterator for batch mode input parameter.
batchInputParameter - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Name of batch mode input parameter.
batchModeActive - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Flag to indicate if batch mode is active.
batchOutputParameter - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: List of batch mode output parameters.
batchOutputResultMap - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Batch mode result objects.
boxItemNone - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing: Default item if no value is selected.
boxItemNone - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Default item if no value is selected.
brackets - Static variable in class de.unihalle.informatik.Alida.helpers.ALDParser: Hashmap to hold pairs of opening and closing brackets.
buildInputPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Builds up the input panel, only called on construction.
buildWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Generates the window.
buildWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Generates the window.
buttonColor_ready - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Default run button color of ready operators.
buttonColor_runnable - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Default run button color of runnable operators.
buttonColor_running - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Default run button color of running operators.
buttonColor_unconfigured - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Default run button color of unconfigured operators.

C

callback - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Associated callback method.
callback1() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
callback2() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
capacity() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Returns the number of slots in this table.
cell - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge: Graph object to which the menu is to be attached.
changeViewMode(Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Switches view mode of the panel.
changeViewMode(Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Changes the view mode.
checkDataflowStateChange(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Updates the state of this node according to the states of its parents.
checkLocalStateChange(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Updates the state of this node according to its local configuration.
checkParentStates(ALDWorkflowNode, ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Check if all parents of the given node have a state at least requiredState.
checkValue(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Method that handles events triggered by the text field.
children - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode: Children of this node.
children - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: children of this opNode, will be set during back tracing
ChooserTreeMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame.ChooserTreeMouseAdapter
classes - Static variable in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing: List of supported classes.
classes - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing: List of supported classes.
classes - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing: List of supported classes.
classesAllowed(ALDOpParameterDescriptor, ALDOpParameterDescriptor, ALDWorkflowEdge) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Check if class of source parameter is assignable to target parameter or may be converted by a converter provider or is incompatible
classloader - Static variable in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter: Class loader to be used for searching SezPoz annotation indices.
className - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Name of parametrized class to configure.
classname - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: The canaonical class name of the ALDData bound to the port.
className - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
classSelection - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Combobox containing available classes to select.
classSelection - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Combobox containing available classes to select.
clear() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Removes all mappings from the map.
clearItems() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox: Clears the combo box, i.e. removes the current set of items.
clearItems() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Clears the combo box, i.e. removes the current set of items.
clearTreeSelection() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
clone() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Returns a shallow copy of this ConcurrentReaderHashMap instance.
clone() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Clone an instance
clone() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Clones an instance.
cloneProperties() - Method in class de.unihalle.informatik.Alida.operator.ALDData: Clone the property hash of this obejct.
closeButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Button to close the configuration window.
closeButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Button to close the configuration window.
closeConfigWindows() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Close all configuration windows.
closeWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Closes the GUI table window.
collectExpandedPackages(TreePath, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Collect the package names (for operators) and path (for workflows) which are currently expanded.
collectInstances - Static variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: if true all instances of ALDOpNode will be collected in a static Vector.
CollectionConfigButton(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton: Constructor.
CollectionConfigWindow(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Default constructor.
CollectionShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton: Constructor.
collectParameternames(int, boolean) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Collect IN and INOUT parameters to be set next.
ComboBoxTooltipRenderer(Vector<ALDSwingComponentItem>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer: Default constructor.
comment - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDException: Exception comment.
compare(Double, Double) - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMax
compare(Double, Double) - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMin
compare(ALDParameterDescriptor, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator.DescriptorComparator
compareTo(ALDSwingComponentItem) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem
COMPATIBILITY() - Constructor for enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.COMPATIBILITY
compatible(Class, Class) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans: Checks compatibility of wrapper and primitive classes.
compCheckBox - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox: Associated Swing component.
compComboBox - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox: Associated Swing component.
compLabel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel: Associated Swing component.
completeDAG - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Does this operator prefer a complete DAG or a data dependency DAG.
completeDAG - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: This opnode prefers a complete DAG to constructed for its invocation.
compList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Associated Swing component.
compListModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: List model underlying the JList component.
compMap - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Maps a parameter descriptor to its component in the GUI.
compMapLinkBak - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Maps a parameter to the component shown if parameter is linked (in Grappa).
componentMap - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame: Map of compenents displayed in frame.
compTextField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Associated Swing component.
confButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton: Button to open configuration window.
confButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton: Button to open configuration window.
confButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Button to create and configure array.
confButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Button to open configuration window.
configButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Button to open configuration window.
configButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Button to open configuration window.
configFrames - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Collection of configuration frames for the available operators.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: GUI component associated with this Swing component.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: GUI component associated with this Swing component.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Panel containing buttons.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Sub-panel containing operator parameters.
configurationEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: List of configuration event listeners attached to this reporter.
configureCollectionApplicationOps() - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner: Configure collection of operators belonging to the application set.
configureCollectionStandardOps() - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner: Configure collection of operators belonging to the standard set.
configureWorkflow(ALDConfigurationEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
configWindows - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map of node cells and their corresponding configuration windows.
configWins - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Hashmap to store configuration windows for classes.
configWins - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Hashmap to store configuration windows for classes.
confPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: Configure button for operator as parameter.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton: Collection configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton: Collection configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Array configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Collection configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Operator configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton: Operator configuration window.
constructionMode - Static variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Mode of implicit construction of the processing graph.
containsKey(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Tests if the specified object is a key in this table.
ContextMenuGraph() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuGraph: Default constructor.
ContextMenuNodeEdge(int, int) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge: Default constructor for context menu.
controlEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: List of control event listeners attached to this reporter.
controlWin - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Corresponding configuration and control window.
convert(Object, Type[], Class<?>, Type[]) - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter: Convert the sourceObject into an object of class targetClass.
convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Convert the sourceObject into an object of class targetClass.
convert(ALDDataConverter, Object, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Convert the sourceObject into an object of class targetClass.
convert(Object, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
convert(Object, Class<?>) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Convert the sourceObject into an object of class targetClass.
convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
converter - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: a data converter to convert source to target class if necessary, i.e. the class of the target parameter is not assignable from the source parameter
converterManager - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: converter manager singleton instance
convolve(Double[], Double[]) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D: Convolve data with the kernel.
copy(Field) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
copyConfiguration(ALDOperatorParameterPanel) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: TODO Function should usually not be required...
copyConfiguration(ALDParameterPanel) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
copyNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Copy this node.
copyWorkflowNodeLinksOnly(ALDOperator, mxCell, ALDOperator, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Copies only the links of a workflow node to a new node of same type.
correctedExtrema - Variable in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D: Corrected extrema
correctedExtrema - Variable in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D: Corrected extrema
CorrectForBaseline1D - Class in de.unihalle.informatik.Alida.demo: Operator to correct the extrema with respect to a baseline.
CorrectForBaseline1D() - Constructor for class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D: Default constructor.
count - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The total number of mappings in the hash table.
createALDXMLWorkflowEgdeType(ALDWorkflowEdge, HashMap<ALDWorkflowNode, Integer>) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans: Crreate a xml object for a workflow edge
createALDXMLWorkflowNodeType(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans: Create a xml object for a workflow node
createChildWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add a new workflow as a child to this workflow.
createChildWorkflow(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add a new workflow as a child to this workflow.
createClassLocation(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: Creates and returns a new location for an class extending ALDOperator.
createCopy() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Create a clone of this event with the same time stamp
createCopy() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Create a clone of this event with the same time stamp
createEdge(ALDWorkflowNodeID, String, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: This method calls createEdge with the argument allowDataConversion = false.
createEdge(ALDWorkflowNodeID, String, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add an edge representing the data flow between the parameter sourceParameterName in the operator represented by the node with sourceNodeId to the parameter targetParameterName in the operator represented by the node with targetNodeId.
createGraphmlDocument(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Create the processing history for sourceObjOfHistory and convert to graphml object.
createGraphmlDocument(Object, ALDProcessingDAG.HistoryType) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Create the processing history for sourceObjOfHistory and convert to graphml object.
createGraphmlDocument(Object, ALDProcessingDAG.HistoryType, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Create the processing history for sourceObjOfHistory and convert to graphml object.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Create a gui element which may be used to request the user to input data.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing: Interface method to create a GUI element for batch data input.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Create a gui element which may be used to request the user to input data of class cl.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing: Interface method to create a GUI element for data input.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing: Generic reading of collections.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing: Generate GUI element for generic reading of enumeration types.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing: Generic reading of hash maps.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing: Generic reading of 1D arrays.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing: Generic reading of 2D arrays.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor, boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: Method to actually create the GUI element for the parameter requested.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel: Generates the GUI element.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
createInParameterPanel(Boolean, Boolean, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Create a panel with an entry for each input parameter as requested.
createNewWorkflowEdge(mxCell, ALDWorkflowNodeID, ALDGrappaNodePortInfo, ALDWorkflowNodeID, ALDGrappaNodePortInfo) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Adds a new edge object to the graph.
createNewWorkflowNode(ALDOperatorLocation, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Creates a new workflow node.
createNode(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add a new operator node to this workflow.
createNode(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add a new operator node to this workflow.
createNode(ALDOperator) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Add a new operator to this workflow.
createOperator() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: Create an ALDOperator form this location object.
createOpTreeModel(Collection<ALDOperatorLocation>, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
createTree(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode: Generates the ModelTree using the tree represented with AuxNodes.
createWorkflowFileLocation(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: Creates and returns a new location for a file holding a work flow.
currentIndex - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D: Index of iterator in set.
currentIndex - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D: Index of iterator in set.
currentVersionProvider - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Stores name of current version provider class.

D

DAGExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException.DAGExceptionType
data - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton: Data to be displayed.
data - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing.HashmapShowButton: Data, i.e. hash map, to be displayed.
data - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton: Data to be displayed.
data - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton: Data to be displayed.
data - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray: Input data array.
data - Variable in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp: Input 1D array
data - Variable in class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix: Input data array.
data - Variable in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: The data
dataArray - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D: Data.
dataArray - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D: Data.
dataIOObj - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing.GrappaLinkTextField
dataIOOrder - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Data I/O order in GUI.
dataTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Data table (swing tables are nicer than imageJ tables).
dataTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Data table (swing tables are nicer than imageJ tables).
dataTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Data table (swing tables are nicer than imageJ tables).
DataTabFileFilter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
DataTabFileFilter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
DataTabFileFilter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
dataTabModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Reference object to the data.
dataTabModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Reference object to the data.
dataTabModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Reference object to the data.
de.unihalle.informatik.Alida.annotations - package de.unihalle.informatik.Alida.annotations: Defines all annotations used within the Alida framework.
de.unihalle.informatik.Alida.annotations.indexing - package de.unihalle.informatik.Alida.annotations.indexing: Contains helper classes related to annotation indexing in Alida.
de.unihalle.informatik.Alida.batch - package de.unihalle.informatik.Alida.batch: Package containing classes for batch mode.
de.unihalle.informatik.Alida.batch.provider.input - package de.unihalle.informatik.Alida.batch.provider.input: Package containing input providers for batch mode.
de.unihalle.informatik.Alida.batch.provider.input.swing - package de.unihalle.informatik.Alida.batch.provider.input.swing: Package containing batch input providers for Swing GUIs.
de.unihalle.informatik.Alida.batch.provider.output - package de.unihalle.informatik.Alida.batch.provider.output: Package containing output provider classes for batch mode.
de.unihalle.informatik.Alida.batch.provider.output.swing - package de.unihalle.informatik.Alida.batch.provider.output.swing: Package containing batch output providers for Swing GUIs.
de.unihalle.informatik.Alida.dataconverter - package de.unihalle.informatik.Alida.dataconverter
de.unihalle.informatik.Alida.dataio - package de.unihalle.informatik.Alida.dataio: Package containing I/O related classes like managers and providers.
de.unihalle.informatik.Alida.dataio.provider - package de.unihalle.informatik.Alida.dataio.provider: Package containing data I/O providers and helpers.
de.unihalle.informatik.Alida.dataio.provider.cmdline - package de.unihalle.informatik.Alida.dataio.provider.cmdline: Package containing data I/O providers for commandline presenters.
de.unihalle.informatik.Alida.dataio.provider.helpers - package de.unihalle.informatik.Alida.dataio.provider.helpers: Package containing data I/O provider helper classes.
de.unihalle.informatik.Alida.dataio.provider.swing - package de.unihalle.informatik.Alida.dataio.provider.swing: Package containing data I/O providers for GUIs based on Java Swing.
de.unihalle.informatik.Alida.dataio.provider.swing.components - package de.unihalle.informatik.Alida.dataio.provider.swing.components
de.unihalle.informatik.Alida.dataio.provider.swing.events - package de.unihalle.informatik.Alida.dataio.provider.swing.events
de.unihalle.informatik.Alida.dataio.provider.xmlbeans - package de.unihalle.informatik.Alida.dataio.provider.xmlbeans: Package containing data I/O providers for xmlbeans presenters.
de.unihalle.informatik.Alida.datatypes - package de.unihalle.informatik.Alida.datatypes: Package containing data types defined by Alida.
de.unihalle.informatik.Alida.demo - package de.unihalle.informatik.Alida.demo: Demonstrator package of how to implement and use Alida operators.
de.unihalle.informatik.Alida.exceptions - package de.unihalle.informatik.Alida.exceptions: Defines Alida exceptions.
de.unihalle.informatik.Alida.grappa - package de.unihalle.informatik.Alida.grappa: Contains all resources for the graphical programming editor Grappa.
de.unihalle.informatik.Alida.gui - package de.unihalle.informatik.Alida.gui: Package containing GUI components for interactive operator selection/control.
de.unihalle.informatik.Alida.helpers - package de.unihalle.informatik.Alida.helpers: Contains miscellaneous helper classes used in Alida.
de.unihalle.informatik.Alida.operator - package de.unihalle.informatik.Alida.operator: Contains the core of Alida, i.e. the operator concept and processing graph stuff.
de.unihalle.informatik.Alida.operator.events - package de.unihalle.informatik.Alida.operator.events: Definitions of Alida events and corresponding reporter and listener interfaces.
de.unihalle.informatik.Alida.tools - package de.unihalle.informatik.Alida.tools: Tools for generic operator execution.
de.unihalle.informatik.Alida.version - package de.unihalle.informatik.Alida.version: Classes for handling software version information.
de.unihalle.informatik.Alida.workflows - package de.unihalle.informatik.Alida.workflows: Classes related to workflows in Alida.
de.unihalle.informatik.Alida.workflows.events - package de.unihalle.informatik.Alida.workflows.events: Contains all events appearing in context of workflows in Alida.
debug - Static variable in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter: For internal debugging purposes.
debug - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager: For internal debugging purposes only.
debug - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager: For internal debugging purposes
debug - Static variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
debug - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
debug - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager: For internal debugging purposes
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline: output debugging info?
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumSetDataIOCmdline: output debugging info?
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: debug messages
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: debugging output
debug - Static variable in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDCollectionDataIOHelper: Flag to output debug infos.
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: Local debug flag, not accessible from outside of the class.
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans: output debugging info?
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumSetDataIOXmlbeans: output debugging info?
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans: debugging output
debug - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: for debug message to stdout
debug - Variable in class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame: Local debug flag.
debug - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Debug flag (not accessible from outside).
debug - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Debug flag (not accessible from outside).
debug - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame: Local debug flag.
debug - Static variable in class de.unihalle.informatik.Alida.helpers.ALDClassInfo: Debug flag for internal usage only.
debug - Static variable in class de.unihalle.informatik.Alida.helpers.ALDParser
debug - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
debug - Variable in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans: debug messages
debug - Static variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: debug flag for debugging output.
debug - Static variable in class de.unihalle.informatik.Alida.operator.GraphmlHelper: turns debugging on
debug - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: debug flag for additional debuging information.
debug - Variable in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: debug flag for additional debuging information.
debug - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: For debugging information
debug - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans: debug messages
debug - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper
DEFAULT_INITIAL_CAPACITY - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The default initial number of table slots for this table (32).
DEFAULT_LOAD_FACTOR - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The default load factor for this table (1.0).
defaultVersionProvider - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Fallback provider if nothing else specified.
defObject - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Default collection object.
delButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Button to delete an element;
delCol - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Button for deleting a column.
delimButtonSpace - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow: Button for selecting spaces as delimiters.
delimButtonTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow: Button for selecting tabs as delimiters.
delimiter - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow: Delimiter to be used for table export to file.
delRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Button for deleting a row.
delRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Button for deleting a row.
DemoWorkflow1D - Class in de.unihalle.informatik.Alida.demo: Operator implementing a workflow using ExperimentalData1D.
DemoWorkflow1D() - Constructor for class de.unihalle.informatik.Alida.demo.DemoWorkflow1D: Default constructor.
depth - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: depth in calling stack of Operators, set when back tracing
DERIVEDCLASS_CHAR - Static variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: As a convention this character starts a derived class name, and is terminated by ':'
description - Variable in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Description
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton: Descriptor associated with parameter object belongs to.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing.HashmapShowButton: Descriptor associated with parameter object belongs to.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton: Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton: Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Optional descriptor granting access to additional parameter information.
DescriptorComparator() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperator.DescriptorComparator
descriptorName - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: The descriptor name of this port within opNode
DetectBaseline1D - Class in de.unihalle.informatik.Alida.demo: Operator to detect a baseline in the data of an ExperimentalData1D.
DetectBaseline1D() - Constructor for class de.unihalle.informatik.Alida.demo.DetectBaseline1D: Default constructor.
DetectLocalExtrema1D - Class in de.unihalle.informatik.Alida.demo: Operator to detect local extrema in the data of an ExperimentalData1D.
DetectLocalExtrema1D() - Constructor for class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D: Default constructor.
DetectLocalExtrema1D.ApproachMax - Class in de.unihalle.informatik.Alida.demo
DetectLocalExtrema1D.ApproachMin - Class in de.unihalle.informatik.Alida.demo
DetectLocalExtrema1D.ExtremaType - Enum in de.unihalle.informatik.Alida.demo
DetectLocalExtrema1D.State - Enum in de.unihalle.informatik.Alida.demo: are we approaching the next extremum, are values equal, or are we departing the last extremum?
Direction() - Constructor for enum de.unihalle.informatik.Alida.annotations.Parameter.Direction
direction - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Direction of the port.
direction - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Direction of this parameter
directionAllowd(ALDWorkflowNode, ALDOpParameterDescriptor, ALDWorkflowNode, ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Checks if the direction are allowed Source parameter
If the source node represents the workflow, the source parameter needs to be of direction IN or INOUT.
directlyRegisteredChildren - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: children of this opNode, set when the operate() represented by this opNode calls nested operators.
directoryDefault - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing: Default directory to be used initially.
dirPath - Variable in class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString: Name of directory including full path.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Deactivates the configuration window to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Deactivates the configuration window to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Disable table and buttons to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Disable table and buttons to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Disables the operator configuration panel.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Disable component to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent: Method to disable the component, i.e. all graphical elements, to prohibit parameter changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
disableComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
disableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Disables all components in the different sub-panels.
disableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Disables all components in this panel.
disableStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Reset flag for step-wise execution.
disableValueChecks - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Flag to disable entry validation checks.
displayFailureMessageWindow(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Displays window with detailed error information on execution failures.
displayMode - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Mode for displaying parameters.
displayMode - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Mode for displaying parameters.
displayMode - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Mode for displaying parameters.
displayMode - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Mode for displaying parameters.
displayOnly - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Flag to indicate if editing is allowed or only display is requested.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Disposes this window and all sub-components.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Disposes this window and all sub-components.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Disposes all resources of this window.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Disposes all resources of this window.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Disposes all resources of this window.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Disposes all resources of this window and its sub-windows.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Disposes all components in the different sub-panels.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Disposes all components in this panel.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Dispose component and all sub-windows.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent: Releases all resources, i.e. closes all sub-windows.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
dispose() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
dispose() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
doHistory - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline: If true writeData should try to write the history to file if the object itself is written to a file
doHistory - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: If true writeData should try to write the history to file if the object itself is written to a file
doMeanFree - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray: Compute mean free data
doNextBatchModeStep() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
doNextStepInWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
donotrun - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: If true, the operator will not be invoked but only its interface printed to stdout.
doStateChange(ALDWorkflowNode, ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Set the new state in the node and fire corresponding event.
doStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Return flag for step-wise execution.
downButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Button to move an element downwards.

E

edgeAllowed(ALDWorkflowEdge, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Check if this edge is allowed.
edgeIdsToString(Collection<ALDWorkflowEdge>) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Formats the ids of the given edges into a string for debugging purposes.
edgeIdToEdge - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Hash map of edges of this workflow.
edges - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: All edges of this workflow.
edgeToEdgeId - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
editsAllowed - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Flag to enable/disable editing.
elapsedTime - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Elpased time
elemClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Collection element class.
elemComps - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: List of current GUI components in window.
elemCounter - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Number of elements.
elementClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Class that table entries should represent.
elementType - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Class object of the generics type.
elemField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Collection element field.
elemFieldType - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Collection element type.
elemType - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: EnumSet element type.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Reactivates the configuration window to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Reactivates the configuration window to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Enable table and buttons to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Enable table and buttons to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Enables the operator configuration panel.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Enable component to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent: Method to enable the component with all graphical elements again.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
enableComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
enableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Enables all components in the different sub-panels.
enableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Enables all components in this panel.
enableStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Set flag for step-wise execution.
entryClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Class of objects to be filled in the table.
entryRefList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: List of currently specified values (to restore entry if check fails).
entryRefList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: List of currently specified values (to restore entry if check fails).
enumList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: List component displaying elements.
enumListItems - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Items in list component.
EnumSelection() - Constructor for enum de.unihalle.informatik.Alida.demo.ALDParameterTester.EnumSelection
EnumSelectionConfigButton(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton: Constructor.
EnumSelectionConfigWindow(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Default constructor.
EnumSelectionShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionShowButton: Constructor.
epsilon - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D: Size of neighborhood is 2*epsilon+1
eq(Object, Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Check for equality of non-null references x and y.
equals(Object) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
errorListToMessage(LinkedList<Integer>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Error function displaying an error message box.
errorListToMessage(LinkedList<int[]>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Error function displaying an error message box.
eSelect - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
eType - Variable in class de.unihalle.informatik.Alida.operator.events.ALDControlEvent: Type of the event.
eType - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Type of the event.
eType - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent: Type of the event.
eType - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Type of the event.
eventMessage - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent: Message string, freely configurable.
eventMessage - Variable in class de.unihalle.informatik.Alida.operator.events.ALDEvent: Message string, freely configurable.
eventQueue - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager: The event queue associated with the listener
EventType() - Constructor for enum de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent.EventType
exception - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventInfo: Exception which caused the run failure, maybe null.
exception - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo: Exception which caused the run failure, may be null
execProxy - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Reference to the surrounding workflow manager.
executeNode(ALDWorkflow, ALDWorkflowNode, boolean) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: This actually runOps the operator in its own thread and takes care of firing events for state changes.
executeNonReadyNodes(List<ALDWorkflowNode>, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run all not ready nodes of the list in the given order.
executeOperator(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Executes the chosen operator, i.e. opens the config/control window.
ExecuteThread(ALDWorkflow, List<ALDWorkflowNode>) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow.ExecuteThread
executionInterrupted - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Deprecated.
ExecutionMode() - Constructor for enum de.unihalle.informatik.Alida.annotations.ALDAOperator.ExecutionMode
experiment - Variable in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D: 1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.DetectBaseline1D: 1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D: 1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D: 1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.SmoothData1D: 1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.WriteExperimentalData1D: 1D Experiment
ExperimentalData1D - Class in de.unihalle.informatik.Alida.demo: This class is a toy implementation of experimental data for a demo of Alida's parametrized classes.
ExperimentalData1D() - Constructor for class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Standard constructor is required
ExperimentalData1D(String, Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Constructor for an experiment.
ExperimentalData1D(String, Double[], boolean, Float) - Constructor for class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Constructor for an experiment.
ExpertMode() - Constructor for enum de.unihalle.informatik.Alida.annotations.Parameter.ExpertMode
explanation - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: The explanation of this port.
explanation - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Explanatory string.
extrema - Variable in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D: Extrema
extrema - Variable in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D: Local extrema detected
extrema - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D: Extrema of un-smoothed data
extrema - Variable in class de.unihalle.informatik.Alida.demo.WriteExtrema1D: 1D Experiment
Extrema1D - Class in de.unihalle.informatik.Alida.demo
Extrema1D() - Constructor for class de.unihalle.informatik.Alida.demo.Extrema1D: Standard constructor is required
extremaSmoothedData - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D: Extrema detected in smoothed data
extremaType - Variable in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D: Type of extrema
ExtremaType() - Constructor for enum de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ExtremaType

F

failureMessageWin - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Corresponding configuration and control window.
fatal(String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Output fatal error to stderr and throw an exception
favoriteOperators - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: List of favorite operators to be unfolded at startup.
field - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Field corresponding to parameter.
fieldContained(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Does any hash table contain the key, i.e. this field?
fileDefault - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing: Default file name in current working directory.
FileDirectoryDataIOPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Default constructor.
FILEIO_CHAR - Static variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: As a convention a parameter value starting with this character indicates that the actual parameter should be read from or writen to a file.
filename - Variable in class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D: Filename
filename - Variable in class de.unihalle.informatik.Alida.demo.WriteExperimentalData1D: Filename
filename - Variable in class de.unihalle.informatik.Alida.demo.WriteExtrema1D: Filename
filename - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
filePath - Variable in class de.unihalle.informatik.Alida.datatypes.ALDFileString: Name of file including complete path information.
filterField - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Text field to enter filter to select operators
filterField - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Text field to enter filter to select operators
findALDOperators(String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Find operator with given pattern among all annotated ALDOperators and return the full qualified names as a list.
findCallbackMethod(Class<?>, String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Find callback method of parameter in class or any of its super classes.
findCurrentThreadsOpNodeStack() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Find the opNode stack for the current thread.
findDataIds(DataType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
findEdgeIds(EdgeType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Insert edgeId and associated nodes into the translationTable.
findHookMethod(Class<?>, String) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper: Find hook method of parameter in class or any of its super classes.
findIds(GraphType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Traverse the graph, find all graphIDs and insert into the translationTable.
findInstantiableSubclasses(Class, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder: Returns all sub-classes of T that can be instantiated, i.e.
findNodeIds(NodeType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Insert nodeId and associated attributes into the translationTable.
findOperators(String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: This method is call once to populate the member matchingClassNames.
findSibblingsAndParent(ALDOpNode, Vector<ALDInputPort>, int) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Find all sibblings and the parent of opNode.
findSubclasses(Class, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder: Returns all sub-classes of T including interfaces and abstract classes that are located in a package below startPackage.
findSubclasses(String, Class, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder
fireALDConfigurationEvent(ALDConfigurationEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
fireALDConfigurationEvent(ALDConfigurationEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter: Sends an event to all registered listeners.
fireALDControlEvent(ALDControlEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
fireALDControlEvent(ALDControlEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter: Sends the given event to all registered listeners.
fireALDOperatorCollectionEvent(ALDOperatorCollectionEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Pass events to registered listeners.
fireALDOpParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Sends an event to all registered listeners.
fireALDOpParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventReporter: Sends the given event to all registered listeners.
fireALDSwingValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter: Sends an event to all registered listeners.
fireALDWorkflowClassEvent(ALDWorkflowClassEvent) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Fire an event by the class ALDWorkflow.
fireALDWorkflowEvent(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
fireALDWorkflowEvent(ALDWorkflowEvent) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter: Sends the given event to all registered listeners.
fireOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Sends an event of changed execution progress to all registered listeners.
fit(double[], double[]) - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D: least squares fit through points given with their x and y coordinates.
floatIn - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
floatIn - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
floatParameterName - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
floatParameterName - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
focusGained(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.TableFocusListener
focusGained(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.TableFocusListener
focusGained(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
focusLost(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.TableFocusListener
focusLost(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.TableFocusListener
focusLost(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline: Returns the string representations of collection.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumSetDataIOCmdline: Returns the string representations of EnumSet.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDHashMapDataIOCmdline: Returns a string representation of the given hash map.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
formatAsString(Object, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: Format all parameters of this parametrized class annotated with ALDClassParameter into a string.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: Generic formatter to string of parametrized classes.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: Returns the string representations of this object This method is assumed to directly format the obj into the string return and make no prior interpretation regarding a file to be used.
formatAsString(Object, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: Returns the external representations of this object using a formatString.
frameHeightMin - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Fixed minimal height of the configuration window.
frameHeightMin - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Fixed minimal height of the configuration window.
frameWidth - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Fixed width of window.
frameWidth - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Fixed width of window.
frameWidthMin - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Fixed minimal width of window.
frameWidthMin - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Fixed minimal width of window.

G

generateAccessFunction(ALDOpParameterDescriptor, String) - Static method in class de.unihalle.informatik.Alida.tools.GenerateGetterSetter: Generate access function code.
generateAccessFunctionNoAnnotation(ALDOpParameterDescriptor, String) - Static method in class de.unihalle.informatik.Alida.tools.GenerateGetterSetter: Deprecated.
GenerateGetterSetter - Class in de.unihalle.informatik.Alida.tools: Generates code for getter/setter methods for an ALDOperator.
GenerateGetterSetter() - Constructor for class de.unihalle.informatik.Alida.tools.GenerateGetterSetter
generateHelpMenu() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Function to setup the help menu.
generateHelpMenu() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Sets up the help menu.
generateHelpMenu() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Sets up the help menu.
genuineInstance - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Genuine object representing the operation.
get(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Returns the value to which the specified key is mapped in this table.
getActionPositionX() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction: Returns the x-coordinate of the action's position.
getActionPositionY() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction: Returns the y-coordinate of the action's position.
getALDPortHashAccessKey() - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get a reference to the port hash access object.
getAllInstances() - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
getAncestors() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return all ancestors of this node.
getAnnotatedFields(Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper: Return all fields for member variables of myclass or any of its super classes which is annotated with ALDClassParameter.
getAPIText() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorDocumentationFrame: Returns the text to be shown as link to the API.
getAPIURL() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorDocumentationFrame: Returns the root URL to the API.
getAvailableClasses() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Request set of available classes.
getBaseline() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
getBaseline() - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
getBatchInputParameters() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Returns selected input parameters for batch mode.
getBatchOutputParameters() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Returns selected output parameters for batch mode.
getCallback() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
getChildren() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get the all opNode children found during back tracing.
getChildren() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return all children nodes of this node.
getClassname() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Return the canonical classname of the ALDData associated with this port
getClassName() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
getClassName() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Returns version provider class according to environment configuration.
getCommentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException: Returns comment string.
getConfigValue(String, String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig: Gets the value of a property from the environment.
getConfigValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig: Reads the value of the specified property from the environment.
getConfigWin(ALDOperator, ALDOpParameterUpdateEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Generate configuration window for given operator.
getConstructionMode() - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator: Return the current mode of implicit construction ALDOperator.constructionMode.
getControlStatus() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Get operator control status.
getControlStatusHandle() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Get wrapper object for control status.
getConverter() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
getCorrectedExtrema() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
getCorrectedExtrema() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
getData() - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp: Returns the 1D array
getData() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Return the data
getDataIOOrder() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns data I/O order of parameter.
getDataPortId(ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Return an ID used in graphml for a data port
getDebug() - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Return the debug state
getDelimiterString() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow: Returns the currently selected delimiter string.
getDepth() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get depth.
getDescendants() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return the nodeIds of all descendants of the given node.
getDescription() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
getDescription() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
getDescription() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
getDescription() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Get description.
getDescriptorName() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Return the descriptor name of the port within its opNode
getDirDialog - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: File/directory chooser dialogue.
getDirection() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Returns parameter direction.
getDirectlyRegisteredChildern() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get the all opNode children directly registered during invocation.
getDirectoryName() - Method in class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString: Returns current name of directory.
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDArrayMean
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDArrayMin
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDArraySum
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllableHandle
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDParameterTester
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
getDocumentation() - Method in class de.unihalle.informatik.Alida.demo.MatrixSum
getDocumentation() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Get class documentation.
getDocumentation() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Full description of the operator, e.g., to be shown as documentation in GUI.
getDummyInitializer(Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing: Method to instantiate dummy object of requested class for default.
getEdge(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Get the workflow edge associated with edgeId.
getEdge(ALDWorkflowNode, String, ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Get the workflow edge connecting given edges and parameters.
getEdgeIdDuringLoading(Integer) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the edgeId of the idx-th edge according to the order of the edges in the external representation resulting from (last) loading this workflow.
getEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return a collection of all edges of this workflow
getElapsedTime() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Get value of elapsedTime.
getEntryNum() - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash: Returns the number of objects currently stored in the port hash.
getEnvVarValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig: Reads the value of the specified property from environment variables.
getEpsilon() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
getEventMessage() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent: Returns individual message string.
getEventMessage() - Method in class de.unihalle.informatik.Alida.operator.events.ALDEvent: Returns individual message string.
getEventMessage(int) - Method in class de.unihalle.informatik.Alida.operator.events.ALDEvent: Returns individual message string formatted to a maximal line length.
getEventQueue(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Returns the event queue associated with the listener or null it the listener is not registered.
getEventType() - Method in class de.unihalle.informatik.Alida.operator.events.ALDControlEvent: Returns type of event.
getEventType() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Returns type of event.
getEventType() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent: Returns type of event.
getEventType() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Returns type of event.
getException() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventInfo: Get exception, might be null.
getException() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOException: Returns string characterising exception type.
getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOException: Returns string characterising exception type.
getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException: Returns string characterising exception type.
getExecutionProgressDescr() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
getExecutionStatus() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Get the current execution status of the operator.
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
getExplanation() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Return the explanation of the port copied from the argument descriptor
getExplanation() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns explanation for parameter.
getExtension(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator: Gets extension from the filename, if any.
getExtrema() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
getExtrema() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
getExtrema() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
getExtremaSmoothedData() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
getExtremaType() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
getField() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns a reference to the field of the parameter.
getFileName() - Method in class de.unihalle.informatik.Alida.datatypes.ALDFileString: Returns current file name value.
getFileName(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator: Returns name without leading directories or file description (extension).
getFilename() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
getGraphId(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Get the graphIP at the beginning of an id up (exculing) idSeparator
getGraphmlHistory() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort: Get the grahphml history of this data port
getGraphName(int) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Return an ID used in graphml for graph
getHandlingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns mode of parameter handling.
getHidingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Return the hidingMode of this operator during execution via runOp.
getHidingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get hiding mode of this opNode.
getHistoryLink(Object) - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash: Get port to which object is currently linked in the history.
getHistoryLink(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Get the port to which the object is currently linked in history.
getIcon() - Method in class de.unihalle.informatik.Alida.helpers.ALDIcon: Get reference to the icon.
getId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Return the id associated with this edge.
getId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return the Id associated with this node.
getId() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent: Returns the index of the even
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException: Returns a (hopefully unique) identification string.
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
getIdentStringWithoutType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException: Returns the ident string in a user-friendly format without type info.
getInactiveParameterNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of all parameters
getIncludedData() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get all included data ports found during back tracing.
getInEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Returns all incoming edges.
getInEdgesForParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return all incoming edges for this node which have their target at parameterName.
getInfo() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Get the info object of this operator collection event.
getInfo() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Get the info object of this workflow event.
getInInoutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of in or inout parameters.
getInInoutNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of in or inout parameters.
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Method to request initial value a provider sets in GUI.
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing: Interface method to request initial GUI values of provider.
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwingInitialGUIValueDefaultHandler
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
getInNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of in parameters.
getInOutNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of inout parameters.
getInputParamIterator(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Returns an iterator for a specific input parameter in batch mode.
getInputPort(int) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get input port with index i of this opNode.
getInputPorts() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get all input ports of this opNode.
getInstance() - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline: Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.helpers.ALDIcon: Get singleton instance.
getIntercept() - Method in class de.unihalle.informatik.Alida.demo.Baseline1D
getItemText() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem: Get textual representation of object.
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent: Method to request the provider's GUI element.
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
getJComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
getJPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Get access to the main panel.
getJPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Method to access associated panel.
getJVMPropValue(String, String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig: Reads the value of the specified property from JVM properties.
getJVMPropValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig: Reads the value of specified property from JVM properties.
getKey() - Method in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Returns the key of this hashmap element.
getLabel() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns label for parameter.
getLastSelectedPathComponent() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
getLength() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
getLevel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Return current mode of usage.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer
getLocation() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode: Get location object.
getLocation() - Method in class de.unihalle.informatik.Alida.operator.ALDData: Get the location property, i.e. property with key location
getLocation() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort: Get the location property, i.e. property with key location
getMappingEdgeIdToInteger() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the current mapping of EdgeIds to integer ids.
getMappingIntegerToEdgeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the current mapping of integer ids to EdgeIds.
getMappingIntegerToNodeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the current mapping of integer ids to NodeIds.
getMappingNodeIdToInteger() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the current mapping of NodeIds to integer ids.
getMatrix() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Get value of matrix.
getMessage() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
getMissingRequiredInputs() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Deprecated.
getMissingRequiredInputs(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Returns the names of all required input parameters of the operator object associated with the node which are not linked and have a value of null.
getMissingRequiredInputs() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Returns the names of all required input parameters of the operator object associated with the node which are not linked and have a value of null
getMyclass() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns class of parameter.
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the name of this operator
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: Returns the proper name of this location
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get the name of the operator represented by this opNode.
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns name of parameter.
getNewConfigWin(ALDOperator, ALDGrappaWorkbenchTab.ParameterUpdateListener) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Generate a new configuration window.
getNewConfigWin(ALDOperator) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Generate a new configuration window.
getNext() - Method in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Returns reference to subsequent hash element.
getNode() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
getNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Get the workflow node associated with nodeId.
getNodeID() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
getNodeIdDuringLoading(Integer) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the nodeId of the idx-th node according to the order of the nodes in the external representation resulting from (last) loading this workflow.
getNodeName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Returns name of node.
getNodes() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return a collection of all nodes of this workflow
getNodeStyleString(String) - Static method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Method to properly format node style string.
getNodeWithoutSources(HashMap<ALDWorkflowNode, Set<ALDWorkflowNode>>) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Returns one node from the sourceNodeMap with zero source nodes, if any.
getNumberOfMeasurements() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Return number of measurements, i.e. the length of the 1D data
getNumEntries() - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Returns the number of objects currently stored in the history database.
getNumParameters() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the number of parameters
getObject() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem: Get the object associated with this item.
getOperator() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Get a reference to the operator object.
getOperator(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Returns the operator object for given unique class identifier.
getOperator(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Get operator for given workflow node ID.
getOperator(String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: This method is called to instantiate the ALDOperator.
getOperator(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Get the operator associated with nodeId.
getOperator() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Returns the operator associated with this node.
getOperatorClass() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get the class object of the operator represented by this opNode.
getOperatorExecutionProgressDescr() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
getOperatorSearchPaths() - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo
getOpNameFilter() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
getOpNode() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Return the opNode of this port
getOpNodeId(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Return an ID used in graphml an opNode
getOpState(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Request the state of the operator workflow node.
getOrigin() - Method in class de.unihalle.informatik.Alida.operator.ALDPort: Get the origin of this port, which is the parent in the processing graph.
getOriginatingOperator() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
getOutEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Returns all outgoing edges.
getOutEdgesForParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return outgoing edges for this node which have their source at parameterName.
getOutInoutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of out or inout parameters
getOutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of out parameters
getOutputPort(int) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get output port with index i of this opNode.
getOutputPorts() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get all output ports of this opNode.
getPackageName() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
getParamDescriptor() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent: Get descriptor of associated (operator) parameter.
getParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the value of a parameter specified by name.
getParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get value of parameter for given key.
getParameterDescriptor(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the parameter descriptor for given name.
getParameterDescriptors(ALDOperatorParameterPanel.ParameterType) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Gets all the parameter descriptors of the given type.
getParameterDescriptorUnconditioned(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the parameter descriptor for given name.
getParameteres() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
getParameterHashAsXml() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get the parameter hash where values of parameters.
getParameterKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get all keys of the parameter hash.
getParameterNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of all parameters
getParameterUnconditioned(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the value of a parameter specified by name.
getParameterValue(boolean, boolean, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Get the current value for a paramter.
getParameterValue(boolean, boolean, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanelParent: Method to allow ALDParameterPanel to request parameter values.
getParameterValue(boolean, boolean, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
getParameterValueVec() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo: Get a reference to the input parameter value vector.
getParent() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get the parent opNode.
getParents() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return all parents of this node.
getParentWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
getPartsOfName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: Return the parts of the name within a hierarchy, e.g. package structure or package structure
getPath(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator: Get path.
getPermanent() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
getPortClassName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Returns the class name of the port/parameter datatype.
getPortDirection() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Returns the direction of the port/parameter.
getPortExplanation() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Returns the explanation of the port/parameter.
getPortId(ALDPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Return an ID used in graphml for a port
getPortIndex() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Return the index of the port within its opNode
getPortLabel() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Returns the label of the port/parameter.
getPortName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Returns the name of the port/parameter.
getProperties() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Return the properties associated with this port which have been retrieved from the data as it passed the port.
getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDData: Get a property value for the given key.
getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort: Get a property value for the given key.
getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort: Return property with key
getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDData: Get the keys of all properties set in this data object
getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort: Get the keys of all properties set in this data object
getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort: Return all keys of the property hash of this output port
getProvider(Class<?>, Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager: Method to return an instance of the batch input provider for given class.
getProvider(Class<?>, Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager: Method to return an instance of the batch output provider of the requested class.
getProvider(Class<?>, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Method to return an instance of the data converter provider for given classes.
getProvider(Class<?>, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
getProvider(Class, Class) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager: Method to return an instance of the DataIO provider class for the class cl which implements the requested interface interfaceRequired (which has itself to implement ALDDataIO).
getProviderInstance() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Returns a reference to the currently selected provider object.
getProviderInstance(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Returns a reference to the provider object of the specified class.
getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Returns the current level of provider interaction.
getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Returns the current level of provider interaction.
getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Returns the current level of provider interaction.
getProviderMap() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager: Method to return a clone of the mapping of classes to dataIO providers.
getRefID() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Returns the reference ID of the node.
getRefinedExtrema() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
getReleaseVersion(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar: Returns the release version/tag of the current jar archive.
getReleaseVersion() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar: Returns the tag/release version.
getRepositoryInfo() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit: Returns information about current commit.
getResultDataVec() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo: Get a reference to the result data vector.
getResultMean() - Method in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray: Returns the calculated mean value.
getReturnElapsedTime() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Get value of returnElapsedTime.
getSelectedItems() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Get set of selected items.
getShadowNodeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
getShortDescription() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode: Get the short description of the operator as extracted from annotation.
getSigma() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
getSlope() - Method in class de.unihalle.informatik.Alida.demo.Baseline1D
getSmoothedExperiment() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
getSmoothedExperiment() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
getSmoothingMethod() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
getSourceClass() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
getSourceNode() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Returns the source node.
getSourceNodeId(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the NodeId of the source node of this edge
getSourceParameterName(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the source parameter name of this edge
getSourceParameterName() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Returns the parameter name of the source.
getSourcePort() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge: Return the source port of the edge.
getState(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Get the state of node with nodeId.
getState() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Returns the current state of this node
getStatus() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatusHandle: Get the current status
getStepSize() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Return desired step size.
getSummaries() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Get value of summaries.
getSummarizeMode() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Get value of summarizeMode.
getSummarizeOp() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Get value of summarizeOp.
getSummary() - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp: Returns the Summarizing scalar
getSums() - Method in class de.unihalle.informatik.Alida.demo.MatrixSum: Returns the calculated sums.
getSupplemental() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Returns if parameter is supplemental.
getSupplementalNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the names of supplemental parameters
getTableForReading() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Get ref to table; the reference and the cells it accesses will be at least as fresh as from last use of barrierLock
getTargetClass() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
getTargetNode() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Returns the target node.
getTargetNodeId(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the NodeId of the target node of this edge
getTargetParameterName(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Return the target parameter name of this edge
getTargetParameterName() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Returns the parameter name of the target.
getTargetPort() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge: Return the target port of the edge.
getText() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Returns text of text field.
getTimeResolution() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Get time resolution in milliseconds.
getTimeStamp() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Returns the timestamp of this event.
getTimeStamp() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Returns the timestamp of this event.
getTooltip() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem: Get tooltip text.
getToolTipForCell(Object) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph
getTooltipText(Object) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Function to return tooltip text for a cell.
getToplevelGraph(GraphmlType) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Return the first element of type Graph found at the top level of the graphml object
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AlidaOpTreeCellRenderer
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException: Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException: Returns the type of this exception.
getType() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent: Get the event's type.
getUniqueClassIdentifier() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollectionElement: Request a unique identifier string for this operator class.
getUniqueClassIDs() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Request collection of unique class IDs for available classes.
getValue(Field, Object) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper: Return the value of the member variable associated with field in the object obj.
getValue() - Method in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Returns the value of this hashmap element.
getValue(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
getValueStringFromFile(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: The complete content of the given file is returned as one string.
getVerbose() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Get value of verbose.
getVerbose() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Return the verbose state of this opertor.
getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Get the version of this operator
getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Get the software version.
getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProvider: Returns the software version of currently running instance.
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderCmdLine
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderDummy
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
getWidth() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
getWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
getWorkflowContext() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
getWorkflowName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Returns name of currently active workflow.
getWorkflowNodeID() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventInfo: Get workflow node ID, might be null.
getWorkflowThreadStatus() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Returns current status of workflow thread.
getWorkflowTitle() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Returns the workflow title.
getX(int) - Method in class de.unihalle.informatik.Alida.demo.Extrema1D: Return the x coordinate of the i-th extremal point
getX() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
getY(Double) - Method in class de.unihalle.informatik.Alida.demo.Baseline1D: Return the function value of this baseline for coordinate x.
getY(int) - Method in class de.unihalle.informatik.Alida.demo.Extrema1D: Return the y coordinate of the i-th extremal point
getY() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
graphEdgeIDs - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map of edge cells and their corresponding Alida workflow IDs.
graphEdges - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map of Alida workflow IDs and their corresponding edge cells.
GraphEventListener() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphEventListener
graphIndex - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: This index is the index used to build the prefix for all Ids for elements for the next history to add to the current graphml.
GraphKeyListener() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
GraphmlHelper - Class in de.unihalle.informatik.Alida.operator: This class supplies some static auxiliary methods used when explicitly constructing a history graph.
GraphmlHelper() - Constructor for class de.unihalle.informatik.Alida.operator.GraphmlHelper
graphmlHistory - Variable in class de.unihalle.informatik.Alida.operator.ALDDataPort: The processing history as graphml if any.
GraphMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphMouseAdapter
graphNodeIDs - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map of node cells and their corresponding Alida workflow IDs.
graphNodes - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map of Alida workflow IDs and their corresponding node cells.
GrappaLinkTextField(ALDGrappaLinkDataIOSwing) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing.GrappaLinkTextField
grappaMainWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Reference to main window of grappa.
grappaMenu - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Menubar.
guiProxys - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: List of active GUI managers.
guiUsageAllowed(Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: Internal helper to request GUI-suitability of an operator.

H

handleAddNodeEvent(ALDOperator, ALDWorkflowNodeID, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Adds a node to the workflow graph.
handleAddNodeEvent(ALDOperator, ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Adds a node to the workflow graph.
handleALDConfigurationEvent(ALDConfigurationEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
handleALDConfigurationEvent(ALDConfigurationEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventListener: Method which is called on event occurence.
handleALDControlEvent(ALDControlEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
handleALDControlEvent(ALDControlEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventListener: Method which is called on event occurence.
handleALDOperatorCollectionEvent(ALDOperatorCollectionEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventListener: Method which is called on event occurrence.
handleALDParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ParameterUpdateListener
handleALDParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterUpdateListener
handleALDParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.ParameterUpdateListener
handleALDParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventListener: Method which is called on event occurence.
handleALDWorkflowClassEvent(ALDWorkflowClassEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
handleALDWorkflowClassEvent(ALDWorkflowClassEvent) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEventListener: Method which is called on event occurrence.
handleALDWorkflowEvent(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
handleALDWorkflowEvent(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
handleALDWorkflowEvent(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy
handleALDWorkflowEvent(ALDWorkflowEvent) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventListener: Method which is called on event occurrence.
handleInputPorts(ALDOpNode, Vector<ALDInputPort>, Vector<ALDInputPort>, LinkedList<ALDOutputPort>) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Trace back each port of inputPorts which are input ports of a child of parentOpNode.
handleLoadWorkflowEvent(ALDWorkflowClassEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
handleNodeParameterChangeEvent(Collection<ALDWorkflowNodeID>) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Update node's configuration window according to parameter status.
handleNodeParameterChangeEvent(Collection<ALDWorkflowNodeID>) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Update parameter labels according to configuration states.
handleNodeStateChangeEvent(HashMap<ALDWorkflowNodeID, ALDWorkflowNode.ALDWorkflowNodeState>) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Update node color according to node's state.
handleNodeStateChangeEvent(HashMap<ALDWorkflowNodeID, ALDWorkflowNode.ALDWorkflowNodeState>) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Update control window color according to node's state.
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener: Method which is called on event occurence.
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
handlePort(ALDOpNode, ALDPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Handle a port to register the incoming edge and to potentially register dataport to opNode.
handleSaveWorkflowEvent(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Stores the workflow to the given file.
handleShowResultsEvent(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Displays result frame for given node.
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in interface de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeListener: Method which is called on event occurence.
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
handleWorkflowRenameEvent(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
handlingMode - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Parameter mode, i.e. if to be relevant for all users or experts only.
hash(Object) - Static method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Return hash code for Object x.
hash - Variable in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Hash value of referenced object.
HashmapShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing.HashmapShowButton: Constructor.
hasInOutParameters() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Return true it this operator has at least one INOUT parameter
hasNext() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
hasNext() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
hasParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Returns true if the operator has a currently active parameter of the given name, otherwise false.
headerOptionalParamsPanel - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Title string for the panel with optional parameters.
headerRequiredParamsPanel - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Title string for the panel with required parameters.
headerSupplementalParamsPanel - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Title string for the panel with supplemental parameters.
hideLeaves(TreePath) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Hide all leaves of this tree below the given path.
HidingMode() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode
hidingMode - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: Hiding mode of this opnode in the processing history.
historyAnchors - Static variable in class de.unihalle.informatik.Alida.operator.ALDPortHash: Hashmap of port links into the processing history.
HistoryConstructionMode() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode
historyType - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Type of the history to be generated.
HistoryType() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDProcessingDAG.HistoryType

I

id - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ParameterUpdateListener: ID of the corresponding Grappa node.
id - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterUpdateListener: Corresponding node ID.
id - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowID: This id is only to print debug information, but NOT to identify an object
idSeparator - Static variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Character separating graphId prefix from rest
idsToOperatorObjects - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Mapping of unique operator class IDs to operator instances.
idsToRerunFlags - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Configuration map storing if operators are allowed to re-run with identical parameter settings.
ignoreEvents - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox: Flag to ensure that no events are triggered if item change is triggered from internal.
ignoreEvents - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Flag to ensure that no events are triggered if item change is triggered from internal.
ignoreHiding - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Ignore hidden flag of opnodes when creating a processing history.
includedData - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: ALDDataPorts created within this opNode, set during back tracing
includeInHistory(ALDOperator.HidingMode, ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Is this invocation to be included into the history?
inconsistent(String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Output error to stderr
inEdges - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: all incoming edges.
info - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
info - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
info - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Flag to indicate if it is just an info parameter.
info - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Info object.
info - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent: ID of work flow object
info - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Object containing information about event.
infoString - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
infoText - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
infoText - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
init() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Does the main work to instantiate the frame.
initAdapter() - Static method in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter: Initialization routine for this class.
initAdapter(ClassLoader) - Static method in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter: Initialization routine for this class.
initDataType() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
initDataType() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
initDone - Static variable in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter: Variable to check if init routine was called.
initFavoriteOperators() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Initialize list of favorite operators to be unfolded at startup.
initInterruptWin() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Setup of the window for renaming workflows.
initMapTable(Class<?>) - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager: Method to initialize the hashmap which registers batch input providers.
initMapTable(Class<?>) - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager: Method to initialize the hashmap which registers batch output providers.
initMapTable() - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Method to initialize the hashmap which registers data conversion providers.
initMapTable(Class) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager: Method to initialize the hashmap which registers DataIO providers.
initNewTab(ALDGrappaWorkbenchGraph) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
initNewWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
initNewWorkflow(ALDGrappaWorkbenchGraph) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
initNodeNameCountMap() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Initialize node name count map on reload of workflow.
initOperator() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Initializes a new operator object with default configuration.
initPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Inits the panel according to formerly specified descriptors.
initReloadedTab(mxGraph, ALDWorkflow) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
initReloadedWorkflow(mxGraph, ALDWorkflow) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
initRenameWin() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Setup of the window for renaming workflows.
initWorkbench() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
inputCheckBoxes - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Set of checkboxes to select input parameters in batch mode.
inputPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: The top level panel of this frame.
inputParameterValues - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo: List of input values for parameter.
inputPorts - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: the input ports of this opNode.
inputProviderComps - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Components in GUI linked to the different input batch parameters.
insertGraphId(String, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Insert id into if not already included.
instance - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: The singleton instance of this class.
instance - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: The singleton instance of this class.
instance - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline: The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.helpers.ALDIcon: Singleton reference.
instantiateObject(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Instantiates an object of the specified version provider class.
intercept - Variable in class de.unihalle.informatik.Alida.demo.Baseline1D: intercept
interiorShadowNode - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: This node is used as an interior shadow (or substitute) for the node holding this workflow.
interruptExecution() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Aborts running execution of the workflow.
interruptExecution() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Aborts running execution of the workflow.
interruptExecution() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Deprecated.
interruptWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Message window shown while workflow execution is aborted.
interruptWorkflowExecution() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
intIn - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
intIn - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
intParameterName - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
intParameterName - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
invoke(Object, mxEventObject) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphEventListener
ioPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Swing component to be integrated in GUI.
isAllowAdditionalFields() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
isAnnotatedParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Returns true if the operator has an annotated parameter name irrespective whether this parameter is currently active or not
isBaselineCorrected() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Query if data are baseline corrected.
isBatchModeActive() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Check if batch mode is currently active.
isClassNameSpecified() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Returns true if the factory can be properly configured.
isCompleteOpnode(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Is a complete history to be created for this opNode?
isConfigured() - Method in interface de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator: Returns true if the object is properly configured.
isConfigured() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
isConfigured() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Checks if this node is configured.
isDirectory - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Flag indicating if panel refers to a directory parameter or not.
isDoHistory() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
isDoHistory() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
isEmpty() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Returns true if this map contains no key-value mappings.
isEnabled - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Flag to remember if window is enabled or disabled.
isExactSubstring(String, String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: return true, if substr is a exact substring of str
isHiddenOpnode(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Should we hide this opnode.
isInfo() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
isInteriorShadowNode - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Is true it his node is used as an interior shadow (or substitute) for the node holding this work flow {see ALDWorkflow.
isNeedConverter() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
isOperator() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode: Is this node a operator?
isOperatorNull() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Allows to check if window is linked to operator object or not.
isParamLinked - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Map keeping track if parameters are linked or not (in Grappa).
isRegistered(Object) - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash: Returns true if the given object is already registered in the hash.
isRegistered(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Check if an object is registered in the hash.
isRequired() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Returns is parameter is required.
isResetDisconnectedInput() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
isTermiate() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
isToplevelOpnode(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Is this an opNode of the toplevel operator.
isTriggerValueChangeEvents() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Returns value of event trigger flag.
isTriggerValueChangeEvents() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Returns value of event trigger flag.
isTriggerValueChangeEvents() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Returns value of event trigger flag.
isVisible() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Method to query if configuration window is visible.
item - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem: Item linked to the combobox entry.
items - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer: List of items represented by combobox.
items - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Items represented in list.
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
itemText - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem: Textual representation of the object.

K

keyPressed(KeyEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
keyReleased(KeyEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
keyTyped(KeyEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
killWorkflowThread() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy

L

label - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Label of the parameter.
labelMap - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Maps a descriptor to its JLabel component in the panel.
lastAdded - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Stores the index of last element added (may vary due to element swaps).
lastDir - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: For convenience: always open last directory for saving.
lastDir - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: For convenience: always open last directory for saving.
lastDir - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: For convenience: always open last directory for saving.
lastDirectory - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Last directory selected by user.
lastDirectory - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Last directory visited, initially it's user's home.
lastFile - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Last file selected by user.
lastFile - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Last selected file.
lastID - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdgeID: variable to count IDs
lastID - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNodeID: variable to count IDs
lastLoadFilePath - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
lastSaveFilePath - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
lastSelectedLocation - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Stores the recently selected path in the chooser tree.
lastWrite - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: field written to only to guarantee lock ordering.
length - Variable in class de.unihalle.informatik.Alida.demo.Extrema1D: Only to test changeValueHook
Level() - Constructor for enum de.unihalle.informatik.Alida.annotations.ALDAOperator.Level
level - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Mode of usage.
linkedDataObject - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Optional data object linked to the table model.
listener - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager: The listener for which to handle events
listenerList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter: List of registered event listeners.
listenerList - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: List of registered event listeners.
listenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Collection of registered event listeners.
load(Class<A>, Class<I>) - Static method in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
load(String) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Load a workflow from file with filename and create a new workflow object.
load(String, boolean) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Load a workflow from file with filename and create a new workflow object.
load(File) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Load a workflow from File and create a new workflow object.
load(File, boolean) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Load a workflow from File and create a new workflow object.
loadFactor - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The load factor for the hash table.
loadFactor() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Returns the load factor.
loadIndexToEdgeId - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Gives the edgeIds of last loading of this workflow from an external representation in the order as store externally.
loadIndexToNodeId - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Gives the nodeIds of last loading of this workflow from an external representation in the order as store externally.
loadTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Loads contents of the table from a user-specified file.
loadTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Loads contents of the table from a user-specified file.
loadWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Loads a new workflow from file(s).
localVersion - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit: Version info string.
location - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode: location object for this node.
location - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode: The location object for this node.
locationType - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: Type of this location
LocationType() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperatorLocation.LocationType
logger - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Slf4j logger.
logger - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Slf4j logger.
logger - Static variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Slf4j logger.
logger - Static variable in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Init a logger object.
lookupExtendingClasses(Class) - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo: Collects all derived class of given class.
lookupOperatorClassnames(ALDAOperator.Level, ALDAOperator.ExecutionMode) - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo: Collects all ALDOperators annotated with the requested level and execution mode and all ALDOperators found in a package specified by a JVM property alida_oprunner_favoriteops or the environment variable ALIDA_OPRUNNER_OPERATORPATH as a colon separated list of package names.
lookupOperators(ALDAOperator.Level, ALDAOperator.ExecutionMode) - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo: Collects all ALDOperators annotated with the requested level and execution mode and all ALDOperators found in a package specified by a JVM property alida_oprunner_favoriteops or the environment variable ALIDA_OPRUNNER_OPERATORPATH as a colon separated list of package names.
lookupParameternames(ALDOperator, String) - Static method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: Lookup all parameter names of the operator with prefix pre.
lookupParameternames(ALDOperator, String) - Static method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans: Lookup all parameter names of the operator with prefix pre.
lookupType(Field) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDCollectionDataIOHelper
lookupWorkflows() - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper: Collects work flows from files and return location objects.
lookupWorkflows(String) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper: Collects work flows from files and return location objects.

M

main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner: Main function called from outside.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Main routine of ALDOpRunner , see usage.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.ALDOpRunnerGUI
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.GenerateGetterSetter: Main function.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: Main routine of ALDOpRunner , see usage.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.PrintOperatorInterface: Extracts operator interface from given class.
mainButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton: Button to open configuration window.
mainFrame - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Main panel of main frame.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Main panel of main frame.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Main panel of main frame.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Main panel.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Main panel containing elements for class selection.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Main panel containing all operator parameters.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: The main panel containing everything.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Main panel of main frame.
mainPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Main panel of chooser window.
mainPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Main panel.
makeVisibleNodes(TreePath, String, HashSet<String>) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Makes all nodes of the tree visible where the corresponding package names (of workflow paths) are contained in packageNames.
manager - Variable in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
mapeEdgeIdToEdge(ALDWorkflowEdgeID) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Map an edgeId to its edge.
mapEgdeToEdgeId(ALDWorkflowEdge) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
mapNodeIdToNode(ALDWorkflowNodeID) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Map a nodeId to its node.
mapNodeToNodeId(ALDWorkflowNode) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Map a node to its NodeId
mapTable - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager: Hashtable containing mappings of datatypes to provider classes.
mapTable - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager: Hashtable containing mappings of datatypes to provider classes.
mapTable - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager: Hashtable containing mappings of class pairs to a collection of provider class names.
mapTable - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager: Hashtable containing mappings of datatypes to DataIO provider classes.
markParameter(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Sets label color of parameter to red (e.g. if validation failed).
markParameterProbablyConf(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
matches(String, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Does className match the opNameFilter
matchingClassNames - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: List of fully qualified class names of operators available
matrix - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Input matrix
matrix - Variable in class de.unihalle.informatik.Alida.demo.MatrixSum: Input matrix
MatrixSum - Class in de.unihalle.informatik.Alida.demo: Demo operator to calculate colum or row sums of a 2D array.
MatrixSum() - Constructor for class de.unihalle.informatik.Alida.demo.MatrixSum: Default constructor.
MatrixSum(Double[][]) - Constructor for class de.unihalle.informatik.Alida.demo.MatrixSum: Constructor.
MatrixSum.SummarizeMode - Enum in de.unihalle.informatik.Alida.demo: Choose row or colum wise sum
MAXIMUM_CAPACITY - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The maximum capacity, used if a higher value is implicitly specified by either of the constructors with arguments.
mean - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray: Calculated average value.
meanFreeData - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray: Mean free data
median(Double[], Integer) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D: Compute the median of data within a window of width width.
messageBoard - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Text field for displaying status messages at the bottom, changes dynamically according to operator and GUI events.
messageBoardLineConfigButtons - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Message board number of line configuration buttons.
messageBoardLineNumber - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Number of lines currently visible in ALDOperatorConfigurationFrame.messageBoard.
messageBoardMenu - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Sub-menu for configuring message board.
messageBoardScroller - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Scrollable pane containing the ALDOperatorConfigurationFrame.messageBoard.
MINIMUM_CAPACITY - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The minimum capacity, used if a lower value is implicitly specified by either of the constructors with arguments.
modifyingParametersAlreadySet - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Names of modifying parameters which have already been set (i.e. values from commandline
modifyParamMode - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Operator interface modification mode.
modParameter1 - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
modParameter1Name - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
modParameter2 - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
modParameter2Name - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
modParameter3 - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
modParameter3Name - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
mouseClicked(MouseEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame.ChooserTreeMouseAdapter
mousePressed(MouseEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphMouseAdapter
mousePressed(MouseEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame.MyMouseAdapter
myclass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Parametrized class to configure.
myclass - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Class of the parameter.
myDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Parameter descriptor associated with parametrized class object.
MyMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame.MyMouseAdapter: Constructor.
myObj - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Object to configure associated with window.

N

name - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Name of the operator
name - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation: The name of this location in the original form, e.g. a filename or a fully qualified class name
name - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: name of the operator for which an invocations is represented by this opNode
name - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Name of the parameter, i.e. its variable.
nameNotAnnotatedParameter - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
nameNotAnnotatedParameter - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
nameParameterMap - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Hashmap to collect parameter name as given on command line and matching parameter name to be handled next
nameValueMap - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Hashmap to collect parameter name as given on command line and corresponding value string
needConverter - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: This field is necessary for (de)serialization as the provider cannot be (de)serialized.
newInstance(Class) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDInstantiationHelper
next() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
next() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
next - Variable in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Pointer to the next reference in hashmap list.
nextTimeStamp - Static variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: Count for (almost) unique time stamps (we allow wrap around).
nextTimeStamp - Static variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: Count for (almost) unique time stamps (we allow wrap around).
nID - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.ParameterUpdateListener: Workflow node ID.
nid - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventInfo: Corresponding workflow node's ID causing this event, maybe null.
node - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Node to which the port is attached.
nodeConfigShowAllParameters - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map of window configurations for parameter display.
nodeConfigShowResultsAtOnce - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map of flags for immediately showing node results.
noDefaultHistory - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: If true, history files are not read and written by default.
nodeID - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo: ID of the workflow node for which a runOp() failed.
nodeIdsToString(Collection<ALDWorkflowNode>) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Formats the ids of the given nodes into a string for debugging purposes.
nodeIdToNode - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Hash map of operator nodes of this workflow.
nodeName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Name of the node, i.e. name of corresponding operator.
nodeNameCountMap - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Map to count nodes of an operator type and allow for unique labels.
nodeParameterChanged() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Notify workflow that operator object parameters changed.
nodeParameterChanged(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Notify the workflow that parameters of the operator object associated with node nodeId have changed.
nodes - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow.ExecuteThread: The nodes of the workflow to execute
nodes - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: All nodes contained in this workflow
nodeToNodeId - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
notifyListenersRecursively - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Flag for recursive propagation of events to nested listeners.
numberClasses - Static variable in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter

O

objCl - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Class of objects to be read through this text field.
okOption - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Ok label to be used on button of Ok message boxes.
oldEdgeTarget - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
oldEdgeTargetParamName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
onlyDisplay - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Flag to disable editability of GUI elements.
op - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: The operator of this frame, may be abstract!
op - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: The operator associated with this frame.
op - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame: Associated operator.
op - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame: Associated operator.
op - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
op - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: The operator to be invoked.
op - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: The operator object associated with this node.
openOperatorConfigWindow(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Method to configure an operator, i.e., open its configuration window.
openWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Shows the table window in graphical environment.
operate() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
operate() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDArrayMean
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDArrayMin
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDArraySum
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllableHandle
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDParameterTester
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
operate() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
operate() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
operate() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
operate() - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
operate() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
operate() - Method in class de.unihalle.informatik.Alida.demo.MatrixSum
operate() - Method in class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D
operate() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
operate() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
operate() - Method in class de.unihalle.informatik.Alida.demo.WriteExperimentalData1D
operate() - Method in class de.unihalle.informatik.Alida.demo.WriteExtrema1D
operate() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: This method does the actual work and needs to be implemented by every subclass.
operate() - Method in class de.unihalle.informatik.Alida.operator.ALDToplevelOperator: The abstract method operate needs to be implemented, but this top levels operator is never to be invoked.
operate() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
operator - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Corresponding operator to be configured.
operator - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: The operator associated with this panel.
operatorClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Class of operator to configure.
operatorClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Class of the operator to be configured.
operatorClass - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: class of the operator for which an invocations is represented by this opNode
OperatorConfigPanel(Class<?>, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Constructor.
operatorConfigurationChanged() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Method to notify the collection that configurations of operators might have changed.
OperatorConfigWindow(ALDOperator, Class<?>, ALDParameterDescriptor, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Default constructor.
OperatorControlStatus() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatus
OperatorControlStatusHandle() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatusHandle
operatorDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Descriptor of parameter linked to operator.
OperatorExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDOperatorException.OperatorExceptionType
operatorExecStatus - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Actual execution state of operator.
operatorExecutionEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: List of control event listeners attached to this class listening to ALDOperatorExecutionProgressEvent.
operatorExecutionProgressDescr - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: The execution progress of the operator associated with this node
OperatorExecutionProxy() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Default constructor.
OperatorExecutionStatus() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorExecutionStatus
OperatorHierarchyConfigPanel() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel: Default constructor.
operatorID - Static variable in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable: Operator identifier.
operatorID - Static variable in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllableHandle: Operator identifier.
operatorNodeID - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Reference ID of the operator node in Alida workflow;
operatorParameterPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Panel where operator parameters are embedded.
OperatorShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton: Constructor.
operatorStatus - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Control status of operator, used to stop/pause/resume calculations.
operatorStatusHandle - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Wrapper object for operator control status.
opLocation - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Location of recently selected operator.
opName - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorDocumentationFrame: Name of associated operator.
opNameFilter - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: if non null regular expression select operators
opNameJText - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Label to display selected operator.
opNode - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: The opNode of this operator during execution of runOp.
opNode - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: The opNode this port belongs to
opNodeIDs - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Mapping of workflow node IDs of active operators to operator objects.
opNodePortsTraced - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
opNodesClone - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
opNodesInGraph - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
opNodeStackHash - Static variable in class de.unihalle.informatik.Alida.operator.ALDOperator: A weak hashmap which contains for each thread a stack of opNodes reflecting the current state of the method stack.
opPackage - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorDocumentationFrame: Package of associated operator/tool.
opParamDescrips - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: List of all parameter descriptors associated with operator.
opParamDescrips - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: List of all parameter descriptors associated with the operator.
opProxy - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Proxy object to run operators in threaded mode.
opStatus - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatusHandle: Status of the operator.
optionCheckboxProgressEvents - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Checkbox in options menu to turn on/off display of progress events.
optionsWindow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Window for configuration of table options.
opTree - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Tree of available operators.
opTree - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Reference to the operator chooser tree of window this menubar belongs to.
opTree - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: JComponent containing both trees of available operators.
opTreePane - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Scroll pane displaying the operator tree.
opTreePane - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Scroll pane displaying the operator tree.
origin - Variable in class de.unihalle.informatik.Alida.operator.ALDPort: The origin/producer of this port.
originatingOperator - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
out_array_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_array_String - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_Boolean - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_Byte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_Double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_Float - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_Long - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_Short - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_vectorByte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
out_vectorDouble - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
outEdges - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: outgoing edges.
outputCheckBoxes - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Set of checkboxed to select parameters to summarize in batch mode.
outputOpNode(ALDOpNode, GraphType) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Output opNode and it ports, and recursively its children to the graph.
outputPorts - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: the output ports of this opNode.
outSelect - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester

P

p2capacity(int) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Returns appropriate capacity for argument.
packageName - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
panelMap - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Maps a parameter descriptor to its panel in the GUI.
panelOptionalParams - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Sub-panel managing the configuration of optional parameters.
panelParent - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Reference of parent panel to which this one belongs.
panelRequiredParams - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Sub-panel managing the configuration of required parameters.
panelSupplementalParams - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Sub-panel managing the configuration of supplemental parameters.
param_boolean - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_Boolean - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_byte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_Byte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_dir - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_Double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_enum - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_file - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_float - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_Float - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_int - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_long - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_Long - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_short - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_Short - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_String - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_vectorByte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
param_vectorDouble - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
paramDescr - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent: Descriptor of the (operator) parameter changed, if available.
paramDescrips - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Listed of associated parametrized class parameters.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Parameter descriptor of associated parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Parameter descriptor of associated parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Descriptor of the associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Descriptor of the associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox: Descriptor of associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox: Descriptor of associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Descriptor of associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Descriptor of associated (operator) parameter.
paramDescriptors - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: List of parameter descriptors managed by this panel.
Parameter - Annotation Type in de.unihalle.informatik.Alida.annotations: Annotation definition for operator parameters.
Parameter.Direction - Enum in de.unihalle.informatik.Alida.annotations: Enumerates the different directions a parameter may, e.g. into or out of an operator.
Parameter.ExpertMode - Enum in de.unihalle.informatik.Alida.annotations: Enumerates the different modes which are defined for a parameter to be shown in automatically generated user interfaces.
Parameter.ParameterModificationMode - Enum in de.unihalle.informatik.Alida.annotations: Defines the different modes of possible changes a parameter might do on changes of its own value.
Parameter.Type - Enum in de.unihalle.informatik.Alida.annotations: Deprecated.
parameterDescriptorsActive - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Hash contains parameter descriptors for all currently active parameters.
parameterDescriptorsAnnotated - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Hash contains parameter descriptors which are annotated.
parameterDescriptorsInactive - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Hash contains parameter descriptors which has previous be active but currently inactive, i.e. removed, for potential later re-use.
parameterHash - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: This hash contains the values of all parameters as return by the toString() method of the parameters at the time of invocation of the operator using runOp().
parameterHash - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
parameterHashAsXml - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: parameteHash as an XmlObject
ParameterModificationMode() - Constructor for enum de.unihalle.informatik.Alida.annotations.Parameter.ParameterModificationMode
parameterModificationMode() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
parameterName - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo: Name of parameter over which was iterated.
parameterPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Parameter panel.
parameterShowModeItem - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge: Checkbox for selecting which set of parameters and ports, to show.
ParameterType() - Constructor for enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel.ParameterType
ParameterUpdateListener(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ParameterUpdateListener: Default constructor.
ParameterUpdateListener(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterUpdateListener: Default constructor.
ParameterUpdateListener(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.ParameterUpdateListener: Default constructor.
ParametrizedClassPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Default constructor.
ParametrizedClassShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassShowButton: Default constructor.
paramFrame - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame: Window to display associated parameter configuration.
paramListener - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Collection of parameter change listeners.
paramPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel: GUI configuration element.
paramPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing: GUI configuration element.
paramUpdateListener - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Listener object attached to the control window.
parent - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: parent of this opNode, will be set during back tracing
parentFrame - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Reference to the control frame linked to this panel.
parentWorkflow - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: This is the enclosing work flow.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline: Returns a collection instantiated from valueString.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumSetDataIOCmdline: Returns a EnumSet instantiated from valueString.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDHashMapDataIOCmdline: Input of hash maps is not yet supported.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline: Method to parse native data from a string.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: Parser for parametrized classes and ALDOperators.
parse(Field, Class<?>, String, ALDOperator) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: Generic Parser for parametrized classes and ALDOperators.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: Returns an object instantiated from valueString.
parseBracket(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser: Parses a string for a matching bracket.
parseBracket(String, char) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser: Parses a string for a matching bracket.
parseNameValuePairs(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser: Parses a comma separated list of 'name=value' pairs into a hash map.
parseXml(File, Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Parse a ALDXMLObjectType from a file using xmlbeans
pauseButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Pause button, changes its label.
pauseWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
pDesc - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionShowButton: Parameter descriptor.
permanent - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: If a parameter is declared as permanent it (reps. its descriptor) may not be removed from the operator
pLevel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Level of interaction providers are allowed to perform.
popRecentlySelectedOperatorLocation() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
popRecentlySelectedOperatorPath() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
popupFinalResults - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Flag to enable/disable automatic pop-up of results at terminal nodes.
portClassName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: (Simple) class name of the parameter datatype.
portExplanation - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Explanation of the parameter.
portHashAccess - Static variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Access to the central port hash.
portIndex - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: The index of this port within opNode
portLabel - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Label of the associated operator parameter.
portName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Variable name of the associated operator parameter.
postStatusMessage(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Posts a general status message in the status text field.
postSystemMessage(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Posts a system status message in the status text field.
postSystemStatusMessage(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Post a new system status message to the log window.
postWorkflowStatusMessage(String, String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Post a new status message to the log window.
print() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
print() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D: print information about this object to stdout
print() - Method in class de.unihalle.informatik.Alida.operator.ALDData: Print this data object to standard out
print() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort: Print some information to System.out.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge: Print this edge to stdout.
print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDEdge: Print this edge to stdout with a given ident string.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Print some information of the current state this operator to System.out.
print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Print some information the current state of this operator to outfile.
print(PrintStream, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Print information of the interface and values of this operator to outfile.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Print information if this opNode to standard output.
print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Print information of this port onto System.out
print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Print this descriptor to outfile
print(PrintStream, ALDOperator) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Print this descriptor to outfile.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort: Print information to standard out
print() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Print this descriptor to standard out.
print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Print this descriptor to outfile.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDPort: Print some information on System.out
print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDPort: Print some information on System.out
print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Print information of this edge to standard out.
print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Print information of this node to standard out.
printData(DataType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Print a Data item to standard out using an indentation string
PrintDataIOProvider - Class in de.unihalle.informatik.Alida.tools: A helper class to adminstrate the ALDIA dataIO system.
PrintDataIOProvider(String[]) - Constructor for class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: Construct a PrintDataIOProvider using args
printEdge(EdgeType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Print an Edge to standard out using an indentation string
printException(ALDException) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
printGraph(GraphType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Print a graph to standard out using an indentation string
printGraphml(GraphmlType) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Print a graphml element to standard out
printInstanceStatistics() - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
printInstanceStatistics(PrintStream) - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
printInterface() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Print information of the interface of this operator to System.out.
printInterface(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Print information of the interface of this operator to outfile.
printMap(HashMap<String, Collection<String>>) - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
printNode(NodeType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Print a Node to standard out using an indentation string
PrintOperatorInterface - Class in de.unihalle.informatik.Alida.tools: Prints the interface of an operator (inputs/outputs/parameters) to console.
PrintOperatorInterface() - Constructor for class de.unihalle.informatik.Alida.tools.PrintOperatorInterface
printPort(PortType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Print a Port to standard out using an indentation string
printUsage() - Static method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Print short usage to stderr.
printUsage() - Static method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: Print usage to stderr.
printUsageVerbose() - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Print verbose usage to stderr.
printUsageVerbose() - Method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: Print verbose usage to stderr.
processWorkflowEventQueue() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Processes all events that were recently added to the queue.
processWorkflowEventQueue() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Processes all events that were recently added to the queue.
processWorkflowEventQueue() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Processes all events that were recently added to the queue.
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDData: Properties of the data object
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDDataPort: The properties of the underlying MTBData at the time of creation of this Dataport
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: The properties retrieved from the data as it passed the port into or out of the operator.
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDOutputPort: Hash to hold properties copied upon return from runOp()
providedClasses() - Method in interface de.unihalle.informatik.Alida.batch.provider.input.ALDBatchInputIterator: Interface method to announce all classes handled by this provider.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing: Interface method to announce class for which IO is provided for field is ignored.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing: Interface method to announce class for which IO is provided for field is ignored.
providedClasses() - Method in interface de.unihalle.informatik.Alida.batch.provider.output.ALDBatchOutputSummarizer: Interface method to announce all classes handled by this provider.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeDataSwing: Interface method to announce class for which IO is provided for field is ignored.
providedClasses() - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter: Announce all classes pairs which the converter can handle.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
providedClasses() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
providedClasses() - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIO: Interface method to announce all classes handled by this provider.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumSetDataIOCmdline
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDHashMapDataIOCmdline
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline: Interface method to announce class for which IO is provided for
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing: Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDClassDataIOXmlbeans
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumSetDataIOXmlbeans
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
providedClasses() - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans: Interface method to announce class for which IO is provided for
providedClasses() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans: Interface method to announce class for which IO is provided for
providedClassesMethodName - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager: Name of the method which returns all classes supported by a DataIO provider class.
providedInputClassesMethodName - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager: Name of the method which returns all classes supported.
providedOutputClassesMethodName - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager: Name of the method which returns all classes supported.
providerAvailable(Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager: Check if a provider has registered for the given class.
providerAvailable(Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager: Check if a provider has registered for the given class.
providerInstances - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Hashmap with global version provider objects.
ProviderInteractionLevel() - Constructor for enum de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing.ProviderInteractionLevel
ProviderInteractionLevel() - Constructor for enum de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing.ProviderInteractionLevel
ProviderInteractionLevel() - Constructor for enum de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing.ProviderInteractionLevel
providesMethodName - Static variable in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter: Name of the method which returns all source classes supported.
provInterLevel - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Interaction level the providers should obey.
provInterLevel - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Interaction level the providers should obey.
provInterLevel - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Interaction level the providers should obey.
put(Object, Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Maps the specified key to the specified value in this table.

Q

quit() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Terminates Grappa after some clean-ups.
quit() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Closes the main window after cleaning up.
quit() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Does clean-up on termination, i.e. closes all open windows.
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Cleans-up on termination, e.g. closes all windows.
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Clean-up on termination.
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Does clean-up on termination, i.e. closes all open windows.

R

readArray1D(Class<?>, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser: Parses a string into a 1D-array.
readArray2D(Class<?>, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser: Parses a string into a 2D-array.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Reads data of given class from a specified source.
readData(Field, Class<?>, ALDSwingComponent) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing: Interface method for getting parameter values via a GUI element.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline: Reads data of given class from a specified source.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Reads data of given class from a specified source.
readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Reads data of given class from a specified source.
readData(Field, Class<?>, String) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOCmdline: Interface for reading data from the given source.
readData(Field, Class<?>, ALDSwingComponent) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing: Interface method for getting parameter values via a GUI element.
readData(Field, Class<?>, ALDXMLObjectType) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOXmlbeans: Interface for reading data from the given source.
readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: Read an object using valueString.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton: Gets the data from the configuration window.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Extracts current collection data.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton: Gets the data from the configuration window.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Extracts current collection data.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Returns the contents of the text field.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Gets the data from the configuration window.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Read data from graphical component.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Gets the data from the configuration window.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Read parameter value from graphical user interface.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Read operator parameter values.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Function to read parameter values from GUI.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Function to read parameter values from GUI.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Extracts current parametrized class configuration.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDClassDataIOXmlbeans
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans: Returns a collection instantiated from aldXmlObject.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumSetDataIOXmlbeans: Returns a EnumSet instantiated from aldXmlObject.
readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans: Method to parse native data from a string.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans: Returns an object instantiated from aldXmlObject.
readData(Field, Class<?>, String, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans: Returns an object instantiated from an ALDXMLObjectType read from a file with name filename.
readData(Field, Class<?>, File, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans: Returns an object instantiated from an ALDXMLObjectType read from file.
readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans: Try to read an object from aldXmlObject with the class stored in the xml representation using ALDStandardizedDataIOXmlbeans.readData(Field,Class,ALDXMLObjectType,Object) from aldXmlObject.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans: Xmlbeans provider for parametrized classes and ALDOperators.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
ReadExperimentalData1D - Class in de.unihalle.informatik.Alida.demo: Operator to read ExperimentalData1D from a file.
ReadExperimentalData1D() - Constructor for class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D: Default constructor.
readGUIParameterValues() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Retrieve parameter values from GUI and configure operator accordingly.
readHistory(Object, String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator: Reads and set the history graph of the given object from file.
readHistory(Object, String) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Read and set the processing history from file.
readParameter(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Get value of given parameter from the GUI element.
readResolve() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Init function for deserialized objects.
readResolve() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Init function for deserialized objects.
readXml(String, Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Read Object from a file using xmlbeans providers
readXml(File, Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Read Object from a file using xmlbeans providers
recordModification(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Force a memory synchronization that will cause all readers to see table.
redirectSource(ALDWorkflowEdgeID, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Call redirectSource with with the argument allowDataConversion = false.
redirectSource(ALDWorkflowEdgeID, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Redirect the source of an edge.
redirectSource(ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Redirect the source of this edge
redirectTarget(ALDWorkflowEdgeID, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Calls redirectTarget with the argument allowDataConversion = false The same restrictions as for createEdge apply.
redirectTarget(ALDWorkflowEdgeID, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Redirect the target of an edge.
redirectTarget(ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: Redirect the target of this node.
redirectWorkflowEdge(mxCell, ALDWorkflowEdgeID, ALDWorkflowNodeID, ALDWorkflowNodeID, ALDGrappaNodePortInfo, ALDGrappaNodePortInfo) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Redirects the workflow edge.
refID - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Reference ID in workflow, required for loading from file.
refinedExtrema - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D: Refined positions of the extrema detected in smoothed data
RefineLocalExtrema1D - Class in de.unihalle.informatik.Alida.demo: Refine extrema extremaSmoothedData found in smoothed data using extrema extrema of the un-smoothed.
RefineLocalExtrema1D() - Constructor for class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D: Default constructor.
reformatInfoString(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing: Reformats an info message to multiple lines if it contains newlines.
refQueue - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Queue for managing references to deleted objects.
register(Object) - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash: Adds the object's port to the hash.
register(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Register the object in the hash.
register(ALDOpNode, ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Register an opNode as child to its parents if not already found directly or indirectly before.
register(ALDOpNode, ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Register the dataport as directly included in opNode.
registerGUIElement(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Adds a graphical component for the given parameter to the GUI.
rehash() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Rehashes the contents of this map into a new table with a larger capacity.
reinitializeParameterDescriptors() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Deprecated.
releaseVersion - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar: Release version or tag information.
relocateNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Relocate the node to this workflow.
relocateNodes(Collection<ALDWorkflowNodeID>, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Relocate the nodes nodeIds and all edges of the sub graph induced by these nodes to this workflow.
remove() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
remove() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
remove(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Removes the key (and its corresponding value) from the table.
removeALDConfigurationEventListener(ALDConfigurationEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
removeALDConfigurationEventListener(ALDConfigurationEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter: Removes a listener from this reporter.
removeALDControlEventListener(ALDControlEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
removeALDControlEventListener(ALDControlEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter: Removes a listener from this reporter.
removeALDOperatorCollectionEventListener(ALDOperatorCollectionEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Deregister an event listener.
removeALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Removes a listener from this reporter.
removeALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventReporter: Removes a listener from this reporter.
removeALDWorkflowClassEventListener(ALDWorkflowEventListener) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Remove a listener for events thrown by the class ALDWorkflow (not an instance).
removeALDWorkflowEventListener(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
removeALDWorkflowEventListener(ALDWorkflowEventListener) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter: Removes a listener from this reporter.
removeEdge(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Remove an edge from the workflow.
removeExtension(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator: Removes extension from filename, if any.
removeGraphId(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Remove the graphIP including idSeparator at the beginning of an id
removeLeadingDirectories(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator: Remove all leading pathname components from a filename.
removeNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Remove a node with all incoming and outgoing edges from the workflow.
removeOperatorExecutionProgressEventListener(ALDOperatorExecutionProgressEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Removes a listener from this reporter.
removeParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Remove the descriptor associated with name.
removeValueChangeEventListener(ALDSwingValueChangeListener) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter: Removes a listener from this reporter.
removeWeakKeys() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Cleans-up the hashmap when called.
removeWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Removes the currently active workflow.
removeWorkflowEdge(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Removes the specified edge from the workflow.
removeWorkflowNode(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Removes the specified cell from the graph.
renameDataIds(DataType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
renameEdgeIds(EdgeType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
renameGraphIds(GraphType, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Rename all GraphIds of nodes, edges, data, etc with a new graphID.
renameIds(GraphType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Traverse the graph, find all graphIDs and do the renaming
renameNodeIds(NodeType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Traverse the graph, find all graphIDs and actually rename.
renameTextField - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
renameWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
renameWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Rename the currently active workflow.
renameWorkflow(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
representsDirectory() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Request type of input.
requestedClass - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D: Class of elements in array.
requestedClass - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D: Class of elements in array.
required - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor: Flag to indicate if parameter is required.
requiresNewlines() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: Method to indicate if provider relies on newlines in format string.
resetButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Button to reset array.
resetButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Button to reset array.
resetButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Button to reset operator to null.
resetDisconnectedInput - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: If true, an input parameter is reset (currently set to null) if is is disconnected (by removing or redirecting an edge) from its source.
resetParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Reset the parameter parameterName in the operator associated to this node.
resizeTableEntries(int) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Method to resize the reference entry list.
resizeTableEntries(int, int) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Method to resize the reference entry list.
restoreConfigWins() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Instantiates for each node in the current workflow a configuration window.
restoreIDs() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Restore maps of Alida workflow IDs and corresponding graph cells.
restoreParameterStatus(String, ALDOperator, Set<String>, Set<String>) - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans: Restore the status of a parameter to the state as specified in the xml representation Prerequisite: pName is a parameter of the operator op and exiting in the xml representation
result - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
result - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
resultDataVec - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo: List of corresponding result data objects.
resultDisplayButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Result display button.
resultFrame - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Frame showing operator execution results.
resultsShowImmediateItem - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge: Checkbox for enabling/disabling immediate display of results.
resumeWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
returnElapsedTime - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Supplemental to request elapsed time to be returned
revFile - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit: Name of revision file.
run() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow.ExecuteThread
run() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
runButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Run button.
runFromNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the given node and all descendants of the given node.
runFromNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the given node and all descendants of the given node.
runFromNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the given node and all descendants of the given node.
runIt() - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: This method does the complete work to scan arguments, read and write parameters and runOp the operator.
runIt() - Method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: This method does the complete work to scan arguments, read and write parameters and runOp the operator.
runNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the given node and all its ancestors.
runNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the given node and all its ancestors.
runNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the given node and all its ancestors.
runOp() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: A legal method to invoke the operator and handles everything necessary to protocol the processing history.
runOp(boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: A legal method to invoke the operator and handles everything necessary to protocol the processing history.
runOp(ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: A legal method to invoke the operator and handles everything necessary to protocol the processing history.
runOperators(Collection<String>) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Run a collection of operators.
runWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Run the currently active workflow.
runWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Executes the complete workflow, i.e. all nodes currently present.
runWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Executes the workflow.
runWorkflow(Collection<String>) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Executes the workflow, i.e., the set of selected operators.
runWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the complete workflow.
runWorkflow(boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the complete workflow.
runWorkflow(boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Run the complete workflow.
runWorkflowFromNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Executes the workflow from the specified node to the end.
runWorkflowInBatchMode() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
runWorkflowNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Executes the workflow up to the specified node.

S

save(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Save this workflow to file.
save(String, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Save this workflow to file.
save(File) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Save this workflow to file.
save(File, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Save this workflow to file.
saveHeaders - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Flag to indicate if headers should be saved to file.
saveTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Saves the contents of the table to a user-specified file.
saveTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Saves the contents of the table to a user-specified file.
saveTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Saves the contents of the table to a user-specified file.
saveWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Saves the currently active workflow to file(s).
saveWorkflow(File) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Saves the workflow to the given file.
scroller - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Scroller element for collection elements.
scroller - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Scroller element for collection elements.
selectFileDir - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Button to select via dialogue.
selection - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionShowButton: Selection to display.
setActionPositionX(int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction: Set x-coordinate of action's position.
setActionPositionY(int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction: Set y-coordinate of action's position.
setAllowAdditionalFields(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
setBaseline(Baseline1D) - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
setClassname(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Set the canonical classname of the ALDData associated with this port
setConstructionMode(ALDOperator.HistoryConstructionMode) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
setConstructionMode() - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
setConstructionMode(int) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator: Set the mode of implicit construction of the processing graph.
setControlStatus(ALDOperatorControllable.OperatorControlStatus) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Set operator control status.
setConverter(ALDDataConverter) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
setData(Double[]) - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp: Sets the 1D array
setData(Double[], boolean) - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D: Set the data
setDebug(boolean) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Set the debug state
setDelimiter(ALDTableWindow.TableModelDelimiter) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow: Set delimiter.
setDepth(int) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Set depth.
setDirection(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
setDisplayOnly(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Enable or display parameter editing.
setDoHistory(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
setDoHistory(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
setEditable(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Disable or enable the elements in the window for editing.
setElapsedTime(long) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Set value of elapsedTime.
setEnabled(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Function to enable or disable the panel.
setEpsilon(Integer) - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
setExperiment(ExperimentalData1D) - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
setExperiment(ExperimentalData1D) - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
setExperiment(ExperimentalData1D) - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
setExperiment(ExperimentalData1D) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
setExplanation(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Set the explanation of the port copied from the argument descriptor
setExtrema(Extrema1D) - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
setExtrema(Extrema1D) - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
setExtremaSmoothedData(Extrema1D) - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
setExtremaType(DetectLocalExtrema1D.ExtremaType) - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
setGraphmlHistory(GraphmlType) - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort: Set the grahphml history of this data port
setHidden(ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Set hidden flag of this opNode.
setHidingMode(ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Set the hiding mode of this operator during execution via runOp.
setHistoryLink(Object, ALDPort) - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash: Set port to which data is currently linked in the history.
setHistoryLink(Object, ALDPort) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Set the port to which the object is currently linked in history.
setInOrigin(int, Object, String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Set the origin of the input port with index i.
setLevel(ALDAOperator.Level) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Set the level of the operators in this tree.
setLocation(String) - Method in class de.unihalle.informatik.Alida.operator.ALDData: Set the location property, i.e. property with key location
setMatrix(Double[][]) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Set value of matrix.
setName(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Set the name of this operator
setName(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
setNewOperator(ALDOperator) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Sets a new operator for the panel.
setNode(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
setNodeName(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Set (new) name for operator.
setNotifyRecursiveFlag(boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Specify if events are to be passed forward to nested listeners or not.
setOperator(ALDWorkflowNodeID, ALDOperator) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Set the operator associated with nodeId.
setOperator(ALDOperator) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Sets the operator associated with this node.
setOperatorExecutionProgressDescr(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
setOperatorParameter(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Retrieve parameter value from GUI and configure operator.
setOperatorParameters(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
setOpNameFilter(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
setOrigin(ALDPort) - Method in class de.unihalle.informatik.Alida.operator.ALDPort: Set the origin of this port, which is the parent in the processing graph.
setOutOrigin(int, Object, String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Set the origin of the output port with index i.
setParameter(ALDParameterDescriptor, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Set value of given parameter, i.e. pass the value to GUI component.
setParameter(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Set the value of a parameter specified by name.
setParameterBatchModeInput(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
setParameterLinked(String, String, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Changes panel for a parameter to indicate that it is linked.
setParameterLinked(String, String, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Configure parameter as linked (particularly in Grappa).
setParameterNotLinked(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Changes panel for a parameter to indicate that it is not linked anymore.
setParameterNotLinked(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Configure parameter as not linked (particularly in Grappa).
setParameterUnconditioned(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Set the value of a parameter specified by name.
setParameterValues(int) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Set all parameters contained in nameParameterMap in this.op with values from commandline
setParamExternallyConfigured(ALDParameterDescriptor, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
setParamNotExternallyConfigured(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
setParent(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode: Set the parent opNode.
setParentFrame(ALDOperatorControlFrame) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Configure parent frame in which given one is embedded.
setParentWorkflow(ALDWorkflow) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
setPortClassName(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
setPortExplanation(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
setPortLabel(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
setPortName(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
setProperties(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort: Set the properties to be associated with this port.
setProperty(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDData: Set the property with key to new value o.
setProperty(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort: Set the property with key to new value o.
setProperty(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort: Set property with key to object o
setProviderClass(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory: Explicitly request a certain class from the code.
setProviderInteractionLevel(ALDBatchInputManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Set the level of provider interaction which is allowed.
setProviderInteractionLevel(ALDBatchOutputManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Set the level of provider interaction which is allowed.
setProviderInteractionLevel(ALDDataIOManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Set the level of provider interaction which is allowed.
setProviderInteractionLevel(ALDDataIOManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Specify the provider interaction level.
setRefID(Integer) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo: Set (new) reference ID.
setRerunFlags(boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Sets re-run flags of all operators to given boolean value.
setRerunFlags(Collection<String>, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection: Sets re-run flags of all operators in the list to given boolean value.
setResetDisconnectedInput(boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
setReturnElapsedTime(boolean) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Set value of returnElapsedTime.
setSaveHeaders(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Function to enable/disable saving of headers to file.
setSelectedItem(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox: Selects the item associated with the given object.
setSelectedItems(Vector<ALDSwingComponentItem>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Selects the given items.
setShowProgressEvents(boolean) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Method to turn on/off display of progress events in status field.
setSigma(Float) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
setSmoothedExperiment(ExperimentalData1D) - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
setSmoothingMethod(SmoothData1D.SmoothingMethod) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
setSourceClass(Class<?>) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
setState(ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Sets the state of this node
setStatus(ALDOperatorControllable.OperatorControlStatus) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatusHandle: Set the current status.
setStepsize(int) - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Set size of steps in step-wise operator execution.
setSummaries(Double[]) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Set value of summaries.
setSummarizeMode(ApplyToMatrix.SummarizeMode) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Set value of summarizeMode.
setSummarizeOp(ALDSummarizeArrayOp) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Set value of summarizeOp.
setTabEntryToDefault(int, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Sets the specified table entry to the class default.
setTabEntryToDefault(int, int, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Sets the specified table entry to the class default.
setTargetClass(Class<?>) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
setTermiate(boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
setText(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Set text of associated text field.
setTriggerValueChangeEvents(boolean) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Set the value change event trigger flag.
setTriggerValueChangeEvents(boolean) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Set the value change event trigger flag.
setTriggerValueChangeEvents(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Set the value change event trigger flag.
setupAboutIcon() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Method to initialize the Grappa icon in the about box.
setupAdditionalMenuOptionItems() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Adds additional entries to the options menu.
setupAdditionalMenus() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Adds additional menu items.
setupAdditionalMenus() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
setupAdditionalTabContents() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Method to add additional tabs to the pane.
setupAdditionalTabContents() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
setupBatchConfigPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Instantiates batch mode configuration panel.
setupMenu() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Generates the menubar.
setupParamConfigPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Adds operator parameter configuration panel to input panel.
setupResultTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Initializes the data table window.
setupTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Initializes the data table window.
setupTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Initializes the data table window.
setupWindow(EnumSet<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Displays the selection in the window.
setupWindow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Construct the frame to configure an operator.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing: Interface method for setting new parameter values in GUI.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Update the value of a parameter in the GUI component.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing: Interface method for setting new parameter values in GUI.
setValue(Field, Object, Object) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper: Sets the value of the member variable associated with field in the object obj.
setValue(String, Object, Object) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper: Sets the field with given name of object objto value.
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton: Sets new values in configuration window.
setValue(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Updates current collection data.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigButton: Sets new values in configuration window.
setValue(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Updates current enum selection.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Returns the contents of the text field.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel: Gets the data from the configuration window.
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Fills the table with specified values.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel: Gets the data from the configuration window.
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Set value of parameter in GUI element.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Function to update values of parametrized class object.
setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
setValue(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Update parameter values in GUI.
setValue(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
setValue(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Sets the value of the hashmap entry.
setValue(Object, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Sets the value of the object represented by this descriptor.
setVerbose(Boolean) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Set value of verbose.
setVerbose(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Set the verbose state of this opertor.
setVisible(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Show or hide the configuration window.
setVisible(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Show or hide the configuration window.
setVisible(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Displays the window and inits an operator object (if not done before).
setVisible(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Set panel visible or invisible.
setVisible(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Show or hide the window.
setWidth(Integer) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
setWorkbenchTab(ALDGrappaWorkbenchTab) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph: Specify workbench tab associated with this graph.
setWorkflowNodeViewMode(mxCell, Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Switches the mode for displaying parameters of a node.
setWorkflowTitle(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Changes the workflow title.
SezPozAdapter - Class in de.unihalle.informatik.Alida.annotations.indexing
SezPozAdapter() - Constructor for class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter: Default constructor, should not be called from outside.
shortDescription - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode: Short description of operator.
shortNames - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel: Hashmap to remember short class names.
shortNames - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel: Hashmap to remember short class names.
showAboutBox() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Show an about box window.
showAboutBox() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Show an about box window.
showAllParameters - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Checkbox to enable/disable display of advanced parameters.
showDocuFrame() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Show the documentation for Grappa.
showDocuFrame() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Show the documentation for the chooser.
showGUI() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Displays the configuration and control window.
showLoadFileSelectDialog() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Show file dialog to load a workflow.
showProgressEvents - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Flag to indicate if progress events are to be shown in window or not.
showProgressEvents() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Method to request whether to display progress events or not.
showProgressEvents - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Flag to indicate if progress events are to be shown in status bar or not.
showProgressEvents() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Method to request whether to display progress events or not.
showProgressEvents - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Flag to enable/disable display of progress events.
showResultFrame() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: (Re-)display the result frame again, if results available.
showSaveFileSelectDialog() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: Show file dialog to save a workflow.
sigma - Variable in class de.unihalle.informatik.Alida.demo.SmoothData1D: Standard deviation of Gaussian
size() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D: Return the number of extremal points
size() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Returns the number of key-value mappings in this map.
slope - Variable in class de.unihalle.informatik.Alida.demo.Baseline1D: slope
smoothByConvolution() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D: Smooth the data by convolution, either with a gaussian or a mean filter
SmoothData1D - Class in de.unihalle.informatik.Alida.demo: Operator to smooth the data of an ExperimentalData1D.
SmoothData1D() - Constructor for class de.unihalle.informatik.Alida.demo.SmoothData1D: Default constructor.
SmoothData1D.SmoothingMethod - Enum in de.unihalle.informatik.Alida.demo
smoothedExperiment - Variable in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D: Smoothed 1D Experiment
smoothedExperiment - Variable in class de.unihalle.informatik.Alida.demo.SmoothData1D: Smoothed 1D Experiment
smoothingMethod - Variable in class de.unihalle.informatik.Alida.demo.SmoothData1D: Smoothing method
SmoothingMethod() - Constructor for enum de.unihalle.informatik.Alida.demo.SmoothData1D.SmoothingMethod
smoothingMethodChanged() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D: Callback routine to change parameters on change of smoothing method.
sortedDescriptors(Collection<String>) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Return a collection of descriptors for the given parameter named which is sorted according to DataIoOrder.
sortHash(HashMap<Integer, Vector<ALDOpParameterDescriptor>>) - Static method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Sorts the items for each key alpha-numerically.
sortParamsByIOOrder(ALDOperator, Collection<String>) - Static method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Sorts a set of parameters according to category and I/O order.
sourceClass - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
sourceClasses - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
sourceNode - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: source node of this edge in the work flow
sourceObject - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
sourceObject - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
sourceParameterName - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: parameter name in source node
sourcePort - Variable in class de.unihalle.informatik.Alida.operator.ALDEdge: Source port of the data flow
split(String, char) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser: Split a string at each occurance of sepChar.
sput(Object, Object, int) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Continuation of put(), called only when synch lock is held and interference has been detected.
sremove(Object, int) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: Continuation of remove(), called only when synch lock is held and interference has been detected.
standardLocations - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
standardTreeModel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Tree of available operators for standard level.
State() - Constructor for enum de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.State
state - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: The state of the node
stateChanged(ChangeEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
stateGreaterEqual(ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode: Return true if the state of this node is greater equal the compareState
status - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Label of status bar, changes dynamically.
stepButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Button for stepping through optimization process.
stepSize - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Step size in step-wise execution mode.
stepsize - Variable in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Size of one step in step-wise execution mode.
stepThroughBox - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Box for activating step-through mode.
stepThroughStepSize - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Field for specifying number of iterations per step-through step.
stepWiseExecution - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Flag for step-wise execution.
stepwiseExecution - Variable in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent: Flag for stepwise execution.
stopButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Stop button to stop snake optimization (after end of iteration).
stopWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
SubclassFinder - Class in de.unihalle.informatik.Alida.helpers: Utility-class with static methods to find all sub-classes of a certain class (or interface) within the scope of the current class-loader find all sub-classes of a certain class (or interface) within the scope of the current class-loader that can be instantiated, i.e. that are neither interfaces nor abstract filter a set of classes by inheritance from a super-class obtain the class of an InstanceParameterSet that can be used to instantiate a sub-class of InstantiableFromParameterSet.
SubclassFinder() - Constructor for class de.unihalle.informatik.Alida.helpers.SubclassFinder
subClassHandler - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: Panel to configure sub-classed or abstract operators as parameters.
summaries - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: 1D Array of summaries.
summarizeMode - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Mode of summarizing
SummarizeMode() - Constructor for enum de.unihalle.informatik.Alida.demo.ApplyToMatrix.SummarizeMode
summarizeMode - Variable in class de.unihalle.informatik.Alida.demo.MatrixSum: Mode of summarizing
SummarizeMode() - Constructor for enum de.unihalle.informatik.Alida.demo.MatrixSum.SummarizeMode
summarizeOp - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix: Summarizing opererator
summary - Variable in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp: Summarizing scalar
sums - Variable in class de.unihalle.informatik.Alida.demo.MatrixSum: 1D Array of sums.
supplemental - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Is this a supplemental parameter
supportConversion(Class<?>, Type[], Class<?>, Type[]) - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter: Does the converter support this kind of conversion.
supportConversion(Class<?>, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
supportConversion(Class<?>, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
supported1DArray(Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing: Checks if a given class is supported or not.
supportsStepWiseExecution() - Method in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable
supportsStepWiseExecution() - Method in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllableHandle
supportsStepWiseExecution() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable: Function for indicating if step-wise execution is supported.
supportsStepWiseExecution() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
synchronizeOperatorWithGUI() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Reads current parameter values from GUI and updates the operator.

T

tabClear - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Button to clear the table.
tabClear - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Button to clear the table.
table - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The hash table data.
tableChanged(TableModelEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
tableChanged(TableModelEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
TableConfigWindow() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow: Default constructor.
TableFocusListener() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.TableFocusListener
TableFocusListener() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.TableFocusListener
TableModelDelimiter() - Constructor for enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableModelDelimiter
tableScroller - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Scrollpane for table panel;
tableScroller - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Scrollpane for table panel;
tableToString(DefaultTableModel, String) - Static method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Converts the contents of the table to a string array in CSV format (suitable, e.g., for import in Excel or R).
tableToString(DefaultTableModel) - Static method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow: Converts the contents of the table to a string array in CSV format (suitable for import in Excel or R).
tabLoad - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Button to load a table.
tabLoad - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Button to load a table.
tabPane - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Tab pane for configuration pane, batch mode pane, etc.
tabPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Table component in window.
tabPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Table component in window.
tabReset - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Button to reset the table.
tabSave - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Button to save the table.
tabSave - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Button to save the table.
targetClass - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
targetClass - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
targetClass - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
targetNode - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: target node of this edge in the work flow
targetObject - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
targetObject - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
targetParameterName - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge: parameter name in target node
targetPort - Variable in class de.unihalle.informatik.Alida.operator.ALDEdge: Target port of the data flow
targetsClasses - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
tdata - Variable in class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix: Output data array.
termiate - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager: if true the thread is asked to terminate its run method
textField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel: Text field in the panel.
textField - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
threshold - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap: The table is rehashed when its size exceeds this threshold.
timeResolution - Variable in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
timeStamp - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent: This is not a real time stamp rather an integer incremented each time a new event is instantiate with the only exception of using new ALDOperatorCollectionElement( event)
timeStamp - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent: This is not a real time stamp rather an integer incremented each time a new event is instantiate with the only exception of using new ALDWorkflowEvent( event)
titlePanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: The panel containing the title label.
titleString - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Optional title string for panel.
titleString - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame: Title of frame.
titleString - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Title string of window.
tooltip - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem: Tooltip text shown upon hovering over the entry.
tooltipHandler - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph: Reference to the workbench tab which is handling tooltip requests.
topLevelCall - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing: Local flag to indicate if object is created on OpRunner top level or not; flag modules if deep validation is done or not.
topLevelCall - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Flag indicating if panel is used on top level or not.
topLevelCall - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Flag indicating if panel is used on top level or not.
topSort(Collection<ALDWorkflowNode>) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Topologically sorts the nodes given in nodes.
topSort() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Topologically sorts all nodes of the workflow.
toString() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
toString() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentItem
toString() - Method in class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString
toString() - Method in class de.unihalle.informatik.Alida.datatypes.ALDFileString
toString() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
toString() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo: Returns an identifier string.
toStringVerbose() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Returns a string containing printable information about this operator including parameters.
tracebackDAG(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Trace back the implicit DAG created during processing for sourceObjOfHistory.
translate(HashMap<String, String>, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper: Translate the id using translationTable.
triggerValueChangeEvents - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing: Flag to indicate if change value events should be triggered or not.
triggerValueChangeEvents - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Flag to indicate if change value events should be triggered or not.
triggerValueChangeEvents - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Flag to indicate if change value events should be triggered or not.
Type() - Constructor for enum de.unihalle.informatik.Alida.annotations.Parameter.Type: Deprecated.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException: Type of exception.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException: Type of exception.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException: Type of exception.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException: Type of exception.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException: Type of exception.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException: Type of exception object.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException: Type of exception object.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException: Type of exception.
type - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException: Type of exception object.
type - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent: Type of this event.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterManagerException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException: Exception identifier.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException: Identifier string.
typeID - Static variable in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException: Identifier string.
typeName - Variable in class de.unihalle.informatik.Alida.operator.ALDPort: Typename of this port.

U

unconfiguredItems() - Method in interface de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator: Return a list of not or not properly configured items of this object.
unconfiguredItems() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Returns all required IN an INOUT parameters which have a null value
unhideLeaves(TreePath) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree: Unhide all leaves of this tree below the given path.
unmarkAllParameters() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Sets label colors of all parameter to black and of all links to blue.
unmarkParameter(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Sets label color of parameter to black or of link to blue (e.g. if validation successful).
untitledWorkflowName - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Name of a workflow with out a proper name
upButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Button to move an element upwards.
updateConfigurationStatus(Collection<String>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Marks configurations status of required parameters by color.
updateItems(Vector<ALDSwingComponentItem>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox: Updates the set of items managed by the combo box.
updateItems(Vector<ALDSwingComponentItem>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList: Updates the set of items managed by the list.
updateNodeID(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterUpdateListener: Updates the ID of the workflow node associated with this listener.
updateNodeStatus(ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame: Updates the window according to the configuration status of the operator.
updateOperator(ALDOperator) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel: Update window with new operator parameter values.
updateOperator(ALDOperator) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Update operator linked to window.
updateOperator(ALDOperator) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Updates the configuration window with settings of a new operator.
updateOperatorDescriptors(LinkedList<ALDOpParameterDescriptor>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Updates the set of parameter descriptors.
updateOperatorParameterDescriptors() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Updates the set of parameter descriptors.
updateParamConfigurationStatus(Collection<String>) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Updates the window according to the status of the operator parameters.
updateParameterGUIElements() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Adds the graphical components for current parameters to panel.
updateParameterPanels() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Initializes all internal members dealing with operator descriptors.
updateParameterValues() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Updates panel according to values in currently given operator.
updateState(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Convenience method which just invokes ALDWorkflow.updateStates(Collection, boolean) with the single node.
updateStates(Collection<ALDWorkflowNode>, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Updates the states of nodesToCheck and their descendants.
updateWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Updates the collection in the window.
updateWorkflowNodeStates() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Checks the states of all nodes and updates their color.
useRealData - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
useRealData - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
useRegEx - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: If true, matching of operator name from commandline to the annoteated ALDOperators uses regular expression matching, otherwise exact substring matching

V

validate() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Validates the parameters and inputs of this operator.
validateCustom() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
validateCustom() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Operator specific validation of parameters and inputs.
validateEntry(Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Checks if a string can be cast to the desired class.
validateEntry(Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Checks if a string can be cast to the desired class.
validateGeneric() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator: Generic validation of the in and inout parameters of this operator.
validateOperatorParameters(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel: Check if operator is ready to run.
validateParameternames(int) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Validate the parametername=valuestring pairs with respect to syntax
validateParameters() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel: Check if all GUI elements can deliver a proper (non-null) value.
value - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField: Current value of the text field.
value - Variable in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry: Referenced object itself.
value - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor: Holds the value of the parameter.
valueChanged(ListSelectionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentList
valueChanged(TreeSelectionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.ExecutionMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.Level: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Direction: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.ExpertMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.ParameterModificationMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Type: Deprecated.

Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing.ProviderInteractionLevel: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing.ProviderInteractionLevel: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing.ProviderInteractionLevel: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel.ParameterType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableModelDelimiter: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.ALDParameterTester.EnumSelection: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.ApplyToMatrix.SummarizeMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ExtremaType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.State: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.MatrixSum.SummarizeMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.SmoothData1D.SmoothingMethod: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException.ALDBatchIOManagerExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException.ALDBatchIOProviderExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataConverterException.ALDDataIOProviderExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException.ALDDataIOManagerExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException.ALDDataIOProviderExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDOperatorException.OperatorExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException.DAGExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDProviderManagerExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDWorkflowException.WorkflowExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.WorkflowThreadStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorExecutionStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorLocation.LocationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDProcessingDAG.HistoryType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDControlEvent.ALDControlEventType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent.ALDOperatorCollectionEventType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent.EventType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.ALDWorkflowContextType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.COMPATIBILITY: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflowNode.ALDWorkflowNodeState: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent.ALDWorkflowClassEventType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent.ALDWorkflowEventType: Returns the enum constant of this type with the specified name.
values() - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.ExecutionMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.Level: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Direction: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.ExpertMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.ParameterModificationMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Type: Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing.ProviderInteractionLevel: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing.ProviderInteractionLevel: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing.ProviderInteractionLevel: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel.ParameterType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableModelDelimiter: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.demo.ALDParameterTester.EnumSelection: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.demo.ApplyToMatrix.SummarizeMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ExtremaType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.State: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.demo.MatrixSum.SummarizeMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.demo.SmoothData1D.SmoothingMethod: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException.ALDBatchIOManagerExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException.ALDBatchIOProviderExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataConverterException.ALDDataIOProviderExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException.ALDDataIOManagerExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException.ALDDataIOProviderExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDOperatorException.OperatorExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException.DAGExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDProviderManagerExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDWorkflowException.WorkflowExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.WorkflowThreadStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorExecutionStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorLocation.LocationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDProcessingDAG.HistoryType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDControlEvent.ALDControlEventType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent.ALDOperatorCollectionEventType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent.EventType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.ALDWorkflowContextType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.COMPATIBILITY: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflowNode.ALDWorkflowNodeState: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent.ALDWorkflowClassEventType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent.ALDWorkflowEventType: Returns an array containing the constants of this enum type, in the order they are declared.
verbose - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOpExtended
verbose - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Verbose flag to be inherited by all operators.
verbose - Variable in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: If true, verbose outputs are written to standard output on calling methods.
verbose - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner: verbose flag to outout additional information to stdout.
verbose - Variable in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider: verbose flag to outout additional information to stdout.
version - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode: version of the operator for which an invocations is represented by this opNode
version - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
versionProvider - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator: Instance of a class providing version information.
visitOpNode(ALDOpNode, ALDOutputPort, int) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Visit the opNode either completely or according to data dependency as define by the opNode and the globale state of the processing DAG.
visitOpNodeComplete(ALDOpNode, int) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Completely visits this opNode.
visitOpNodeDatadependency(ALDOpNode, ALDOutputPort, int) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG: Visit the opNode detecting all inner children and data ports on which the output port of interest portOfInterest depends on.

W

wasAnnotated(String, ALDXMLKeyValuePairType[]) - Static method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
width - Variable in class de.unihalle.informatik.Alida.demo.SmoothData1D: Window width
win - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassShowButton: Associated parameter window.
window - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow: Main frame.
window - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionConfigWindow: Main frame.
window - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing.EnumSelectionShowButton: Main window.
window - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Main frame.
window - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Main window.
window - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow: Main configuration window.
window - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow: Main configuration window.
windowHasFocus - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow: Flag to indicate the table window has the focus.
windowHasFocus - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow: Flag to indicate the table window has the focus.
workBench - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame: Component which holds the graph.
workBench - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar: Reference to the workbench of window this menubar belongs to.
workBench - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Reference to the surrounding work bench object.
workflow - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow.ExecuteThread: workflow to execute nodes for.
workflow - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
workflowContext - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Determines the context of this workflow
workflowEventMangerList - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: List of control event listeners attached to this workflow.
WorkflowExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDWorkflowException.WorkflowExceptionType
workflowHasNodes() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Check if the workflow is empty.
workflowLoadEventlistenerList - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: List of control event listeners attached to this class used for loading workflows.
WorkflowModifyAction() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction: Default constructor.
workflowNodeIDs - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorCollection.OperatorExecutionProxy: Mapping of operators UIDs to workflow node IDs.
workflows - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench: List of workflows currently managed.
workflowStatus - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Current status of the operator execution thread.
WorkflowThreadStatus() - Constructor for enum de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.WorkflowThreadStatus
workflowTitle - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab: Title of this workflow as shown on the tab.
workflowXMLFileExtension - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow: Standard extension for a xml file holding the external representation of a workflow.
writeData(ALDBatchRunResultInfo, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing: Interface method for displaying a batch summary in the GUI.
writeData(ALDBatchRunResultInfo, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.batch.provider.output.swing.ALDBatchOutputSummarizerSwing: Generates a graphical component to visualize set of result data.
writeData(ALDBatchRunResultInfo, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing
writeData(ALDBatchRunResultInfo, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeDataSwing
writeData(Object, String) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline: Writes data to the specified location.
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing: Returns a GUI element visualizing the given parameter object.
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Writes data to the specified location.
writeData(Object, String) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOCmdline: Interface for writing the object data to the target location.
writeData(Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing: Interface method for displaying an object in the GUI.
writeData(Object) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOXmlbeans: Interface for writing the object data to the target location.
writeData(Object, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
writeData(Object, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline: Return a string representation of given object value or print it to a file.
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumSetDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDHashMapDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
writeData(Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDClassDataIOXmlbeans
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans: Returns the string representations of collection.
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumSetDataIOXmlbeans: Returns the string representations of collection.
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
writeData(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
writeData(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans: Xmlbeans provider for parametrized classes and ALDOperators.
writeData(Object) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
WriteExperimentalData1D - Class in de.unihalle.informatik.Alida.demo: Operator to write ExperimentalData1D to a file.
WriteExperimentalData1D() - Constructor for class de.unihalle.informatik.Alida.demo.WriteExperimentalData1D: Default constructor.
WriteExtrema1D - Class in de.unihalle.informatik.Alida.demo: Operator to write ExtremaalData1D to a file.
WriteExtrema1D() - Constructor for class de.unihalle.informatik.Alida.demo.WriteExtrema1D: Default constructor.
writeHistory(Object, String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator: Write the processing history if any to a graphml file.
writeHistory(Object, String, ALDProcessingDAG.HistoryType) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator: Write the processing history if any to a graphml file.
writeHistory(Object, String, ALDProcessingDAG.HistoryType, boolean) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator: Write the processing history if any to a graphml file.
writeHistory(Object, String) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Deprecated.
writeHistory(Object, String, ALDProcessingDAG.HistoryType) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Deprecated.
writeHistory(Object, String, ALDProcessingDAG.HistoryType, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess: Write the processing history (if available) to a graphml file.
writeParameterValues(int) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner: Write all OUT and INOUT parameters specified on the command line.
writeXml(String, Object) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Write to object to a file using xmlbeans providers
writeXml(File, Object) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans: Write the object to a file using xmlbeans providers
writtenDataports - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG

X

x - Variable in class de.unihalle.informatik.Alida.demo.Extrema1D: x coordinates
xValueChanged() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D: Callback function to be called, e.g., upon de-serialization

Y

y - Variable in class de.unihalle.informatik.Alida.demo.Extrema1D: y coordinates
yesnoOption - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame: Labels to be used on buttons of Yes/No message boxes.
yesnoOption - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy: Labels to be used on buttons of Yes/No message boxes.

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