Package plugin

Class Stitching_Pairwise

java.lang.Object

plugin.Stitching_Pairwise

All Implemented Interfaces:

ij.plugin.PlugIn

public class Stitching_Pairwise
extends Object
implements ij.plugin.PlugIn

Field Summary

Fields

Modifier and Type	Field	Description
static int	defaultChannel1
static int	defaultChannel2
static int	defaultCheckPeaks
static boolean	defaultComputeOverlap
static double	defaultDisplacementThresholdAbsolute
static double	defaultDisplacementThresholdRelative
static boolean	defaultFuseImages
static int	defaultFusionMethod
static boolean[]	defaultHandleChannel1
static boolean[]	defaultHandleChannel2
static boolean	defaultIgnoreZeroValues
static int	defaultImg1
static int	defaultImg2
static int	defaultMemorySpeedChoice
static boolean	defaultSubpixelAccuracy
static int	defaultTimeSelect
static double	defaultxOffset
static double	defaultyOffset
static double	defaultzOffset

Constructor Summary

Constructors

Constructor	Description
Stitching_Pairwise()

Method Summary

Modifier and Type	Method	Description
protected static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> ij.ImagePlus	fuse(T targetType, ij.ImagePlus imp1, ij.ImagePlus imp2, ArrayList<mpicbg.models.InvertibleBoundable> models, StitchingParameters params)
protected static Vector<ComparePair>	getComparePairs(ij.ImagePlus imp1, ij.ImagePlus imp2, int dimensionality, int timeSelect)
static void	performPairWiseStitching(ij.ImagePlus imp1, ij.ImagePlus imp2, StitchingParameters params)
void	run(String arg0)
static String	testRegistrationCompatibility(ij.ImagePlus imp1, ij.ImagePlus imp2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

defaultImg1

public static int defaultImg1

defaultImg2

public static int defaultImg2

defaultChannel1

public static int defaultChannel1

defaultChannel2

public static int defaultChannel2

defaultTimeSelect

public static int defaultTimeSelect

defaultFuseImages

public static boolean defaultFuseImages

defaultFusionMethod

public static int defaultFusionMethod

defaultIgnoreZeroValues

public static boolean defaultIgnoreZeroValues

defaultComputeOverlap

public static boolean defaultComputeOverlap

defaultSubpixelAccuracy

public static boolean defaultSubpixelAccuracy

defaultCheckPeaks

public static int defaultCheckPeaks

defaultxOffset

public static double defaultxOffset

defaultyOffset

public static double defaultyOffset

defaultzOffset

public static double defaultzOffset

defaultHandleChannel1

public static boolean[] defaultHandleChannel1

defaultHandleChannel2

public static boolean[] defaultHandleChannel2

defaultMemorySpeedChoice

public static int defaultMemorySpeedChoice

defaultDisplacementThresholdRelative

public static double defaultDisplacementThresholdRelative

defaultDisplacementThresholdAbsolute

public static double defaultDisplacementThresholdAbsolute

Constructor Details

Stitching_Pairwise

public Stitching_Pairwise()

Method Details

run

public void run(String arg0)

Specified by:

run in interface ij.plugin.PlugIn

performPairWiseStitching

public static void performPairWiseStitching(ij.ImagePlus imp1,
 ij.ImagePlus imp2,
 StitchingParameters params)

fuse

protected static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
ij.ImagePlus fuse(T targetType,
 ij.ImagePlus imp1,
 ij.ImagePlus imp2,
 ArrayList<mpicbg.models.InvertibleBoundable> models,
 StitchingParameters params)

getComparePairs

protected static Vector<ComparePair> getComparePairs(ij.ImagePlus imp1,
 ij.ImagePlus imp2,
 int dimensionality,
 int timeSelect)

testRegistrationCompatibility

public static String testRegistrationCompatibility(ij.ImagePlus imp1,
 ij.ImagePlus imp2)