Class Stitching_3D

java.lang.Object

Stitching_3D

All Implemented Interfaces:

ij.plugin.PlugIn

public class Stitching_3D
extends Object
implements ij.plugin.PlugIn

Field Summary

Fields

Modifier and Type	Field	Description
double	alpha
static double	alphaStatic
int	checkPeaks
static int	checkPeaksStatic
boolean	computeOverlap
static boolean	computeOverlapStatic
boolean	coregister
static boolean	coregisterStatic
boolean	doLogging
String	fusedImageName
boolean	fuseImages
static boolean	fuseImagesStatic
String	handleRGB1
static String	handleRGB1Static
String	handleRGB2
static String	handleRGB2Static
String	imgStack1
String	imgStack2
ij.ImagePlus	imp1
ij.ImagePlus	imp2
String	method
static String	methodStatic
double	minOverlap
int	numberOfChannels
static int	numberOfChannelsStatic
boolean	wasIndexed
boolean	windowing
static boolean	windowingStatic
int	xOffset
static int	xOffsetStatic
int	yOffset
static int	yOffsetStatic
int	zOffset
static int	zOffsetStatic

Constructor Summary

Constructors

Constructor	Description
Stitching_3D()
Stitching_3D(boolean windowing1, int checkPeaks1, boolean fuseImages1, String method1, String fusedImageName1)

Method Summary

Modifier and Type	Method	Description
static final void	addEnablerListener(Checkbox master, Component[] enable, Component[] disable)
static final void	addInverseEnablerListener(Checkbox master, Component[] enable, Component[] disable)
static ArrayList<Point3D>	findPeaks(FloatArray3D invPCM, Point3D img1, Point3D img2, Point3D ext1, Point3D ext2, int checkPeaks)
CrossCorrelationResult3D	getCrossCorrelationResult()
CrossCorrelationResult3D[]	getCrossCorrelationResults()
Point3D	getTranslation()
void	run(String args)
void	work()
void	work(FloatArray3D inputImage1, FloatArray3D inputImage2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

imgStack1

public String imgStack1

imgStack2

public String imgStack2

fusedImageName

public String fusedImageName

methodStatic

public static String methodStatic

handleRGB1Static

public static String handleRGB1Static

handleRGB2Static

public static String handleRGB2Static

fuseImagesStatic

public static boolean fuseImagesStatic

windowingStatic

public static boolean windowingStatic

coregisterStatic

public static boolean coregisterStatic

computeOverlapStatic

public static boolean computeOverlapStatic

checkPeaksStatic

public static int checkPeaksStatic

numberOfChannelsStatic

public static int numberOfChannelsStatic

alphaStatic

public static double alphaStatic

xOffsetStatic

public static int xOffsetStatic

yOffsetStatic

public static int yOffsetStatic

zOffsetStatic

public static int zOffsetStatic

method

public String method

handleRGB1

public String handleRGB1

handleRGB2

public String handleRGB2

fuseImages

public boolean fuseImages

windowing

public boolean windowing

coregister

public boolean coregister

computeOverlap

public boolean computeOverlap

checkPeaks

public int checkPeaks

numberOfChannels

public int numberOfChannels

alpha

public double alpha

xOffset

public int xOffset

yOffset

public int yOffset

zOffset

public int zOffset

imp1

public ij.ImagePlus imp1

imp2

public ij.ImagePlus imp2

wasIndexed

public boolean wasIndexed

doLogging

public boolean doLogging

minOverlap

public double minOverlap

Constructor Details

Stitching_3D

public Stitching_3D()

Stitching_3D

public Stitching_3D(boolean windowing1,
 int checkPeaks1,
 boolean fuseImages1,
 String method1,
 String fusedImageName1)

Method Details

getTranslation

public Point3D getTranslation()

getCrossCorrelationResults

public CrossCorrelationResult3D[] getCrossCorrelationResults()

getCrossCorrelationResult

public CrossCorrelationResult3D getCrossCorrelationResult()

run

public void run(String args)

Specified by:

run in interface ij.plugin.PlugIn

addEnablerListener

public static final void addEnablerListener(Checkbox master,
 Component[] enable,
 Component[] disable)

addInverseEnablerListener

public static final void addInverseEnablerListener(Checkbox master,
 Component[] enable,
 Component[] disable)

work

public void work()

work

public void work(FloatArray3D inputImage1,
 FloatArray3D inputImage2)

findPeaks

public static ArrayList<Point3D> findPeaks(FloatArray3D invPCM,
 Point3D img1,
 Point3D img2,
 Point3D ext1,
 Point3D ext2,
 int checkPeaks)