Class Stitch_Multiple_Series_File

java.lang.Object

Stitch_Multiple_Series_File

All Implemented Interfaces:

ij.plugin.PlugIn

public class Stitch_Multiple_Series_File
extends Object
implements ij.plugin.PlugIn

Author:

Stephan Preibisch (stephan.preibisch@gmx.de)

Field Summary

Fields

Modifier and Type	Field	Description
double	alpha
static double	alphaStatic
static boolean	computeOverlapStatic
static String	fileNameStatic
static String	fusionMethodStatic
static boolean	ignoreCalibrationStatic
static boolean	ignoreZStageStatic
static boolean	invertXStatic
static boolean	invertYStatic
static double	overlapStatic
static boolean	previewOnlyStatic
double	thresholdDisplacementAbsolute
static double	thresholdDisplacementAbsoluteStatic
double	thresholdDisplacementRelative
static double	thresholdDisplacementRelativeStatic
double	thresholdR
static double	thresholdRStatic

Constructor Summary

Constructors

Constructor	Description
Stitch_Multiple_Series_File()

Method Summary

Modifier and Type	Method	Description
protected ArrayList<ImageInformation>	parseMultiSeriesFile(String filename, double increaseOverlap, boolean ignoreCalibration, boolean invertX, boolean invertY, boolean ignoreZStage)
void	run(String arg0)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

alpha

public double alpha

thresholdR

public double thresholdR

thresholdDisplacementRelative

public double thresholdDisplacementRelative

thresholdDisplacementAbsolute

public double thresholdDisplacementAbsolute

fileNameStatic

public static String fileNameStatic

computeOverlapStatic

public static boolean computeOverlapStatic

overlapStatic

public static double overlapStatic

invertXStatic

public static boolean invertXStatic

invertYStatic

public static boolean invertYStatic

ignoreZStageStatic

public static boolean ignoreZStageStatic

fusionMethodStatic

public static String fusionMethodStatic

alphaStatic

public static double alphaStatic

thresholdRStatic

public static double thresholdRStatic

thresholdDisplacementRelativeStatic

public static double thresholdDisplacementRelativeStatic

thresholdDisplacementAbsoluteStatic

public static double thresholdDisplacementAbsoluteStatic

previewOnlyStatic

public static boolean previewOnlyStatic

ignoreCalibrationStatic

public static boolean ignoreCalibrationStatic

Constructor Details

Stitch_Multiple_Series_File

public Stitch_Multiple_Series_File()

Method Details

run

public void run(String arg0)

Specified by:

run in interface ij.plugin.PlugIn

parseMultiSeriesFile

protected ArrayList<ImageInformation> parseMultiSeriesFile(String filename,
 double increaseOverlap,
 boolean ignoreCalibration,
 boolean invertX,
 boolean invertY,
 boolean ignoreZStage)