Class Stitch_Image_Grid_Sequence

java.lang.Object
Stitch_Image_Grid_Sequence
All Implemented Interfaces:
ij.plugin.PlugIn
public class Stitch_Image_Grid_Sequence extends Object implements ij.plugin.PlugIn
Plugin class to stitch a sequence of grid of images (fixed X/Y configuration)
Author:
Ignacio Arganda-Carreras

  • Field Details

    • gridSizeXStatic

      public static int gridSizeXStatic

    • gridSizeYStatic

      public static int gridSizeYStatic

    • gridSizeZStatic

      public static int gridSizeZStatic

    • overlapStatic

      public static double overlapStatic

    • inputDirectoryStatic

      public static String inputDirectoryStatic

    • fileNamesStatic

      public static String fileNamesStatic

    • rgbOrderStatic

      public static String rgbOrderStatic

    • tileConfStatic

      public static String tileConfStatic

    • outputDirectoryStatic

      public static String outputDirectoryStatic

    • writeOnlyTileConfStatic

      public static boolean writeOnlyTileConfStatic

    • startXStatic

      public static int startXStatic

    • startYStatic

      public static int startYStatic

    • startZStatic

      public static int startZStatic

    • startIStatic

      public static int startIStatic

    • handleRGBStatic

      public static String handleRGBStatic

    • fusionMethodStatic

      public static String fusionMethodStatic

    • alphaStatic

      public static double alphaStatic

    • thresholdRStatic

      public static double thresholdRStatic

    • thresholdDisplacementRelativeStatic

      public static double thresholdDisplacementRelativeStatic

    • thresholdDisplacementAbsoluteStatic

      public static double thresholdDisplacementAbsoluteStatic

    • previewOnlyStatic

      public static boolean previewOnlyStatic

    • computeOverlapStatic

      public static boolean computeOverlapStatic

  • Constructor Details

    • Stitch_Image_Grid_Sequence

      public Stitch_Image_Grid_Sequence()

  • Method Details

    • run

      public void run(String arg0)
      Specified by:
      run in interface ij.plugin.PlugIn

    • stitchImageGridSequence

      public static void stitchImageGridSequence(int nSections, String filenames, String inputDirectory, GridLayout gridLayout, String handleRGB, String fusionMethod, String outputFileName, String outputDirectory, double overlap, int startX, int startY, int startZ, int startI, boolean writeOnlyOutput, boolean previewOnly, boolean computeOverlap)
      Stitch sequence of image grids (all grids must have the same X/Y configuration)
      Parameters:
      nSections -
      filenames -
      inputDirectory -
      gridLayout -
      handleRGB -
      fusionMethod -
      outputFileName -
      outputDirectory -
      overlap -
      startX -
      startY -
      startZ -
      startI -
      writeOnlyOutput -
      previewOnly -
      computeOverlap -