Class Stitch_Image_Collection

java.lang.Object

Stitch_Image_Collection

All Implemented Interfaces:

ij.plugin.PlugIn

public class Stitch_Image_Collection
extends Object
implements ij.plugin.PlugIn

Field Summary

Fields

Modifier and Type	Field	Description
double	alpha
static double	alphaStatic
static boolean	computeOverlapStatic
int	dim
static String	fileNameStatic
static String	fusionMethodStatic
static String	handleRGBStatic
static boolean	previewOnlyStatic
String	rgbOrder
static String	rgbOrderStatic
double	thresholdDisplacementAbsolute
static double	thresholdDisplacementAbsoluteStatic
double	thresholdDisplacementRelative
static double	thresholdDisplacementRelativeStatic
double	thresholdR
static double	thresholdRStatic

Constructor Summary

Constructors

Constructor	Description
Stitch_Image_Collection()

Method Summary

Modifier and Type	Method	Description
static ij.ImagePlus	fuseImages(ArrayList<ImageInformation> imageInformationList, float[] max, String name, String fusionMethod, String rgbOrder, int dim, double alpha, boolean showOutput)
protected static float[]	getAndApplyMinMax(ArrayList<ImageInformation> imageInformationList, int dim)
static BufferedReader	openFileRead(String fileName)
void	run(String arg0)
protected static ij.measure.Calibration	updateCalibration(ij.measure.Calibration cal, ij.measure.Calibration newOne)
ij.ImagePlus	work(String fileName, boolean createPreview, boolean computeOverlap, String fusionMethod, String handleRGB, boolean showImage)
ij.ImagePlus	work(ArrayList<ImageInformation> imageInformationList, boolean createPreview, boolean computeOverlap, String fusionMethod, String handleRGB, String fileName, boolean showImage)
ij.ImagePlus	work(GridLayout gridLayout, boolean createPreview, boolean computeOverlap, String fileName, boolean showImage)
protected void	writeOutputConfiguration(String fileName, ArrayList<ImageInformation> imageInformationList)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

dim

public int dim

alpha

public double alpha

thresholdR

public double thresholdR

thresholdDisplacementRelative

public double thresholdDisplacementRelative

thresholdDisplacementAbsolute

public double thresholdDisplacementAbsolute

rgbOrder

public String rgbOrder

fileNameStatic

public static String fileNameStatic

computeOverlapStatic

public static boolean computeOverlapStatic

handleRGBStatic

public static String handleRGBStatic

rgbOrderStatic

public static String rgbOrderStatic

fusionMethodStatic

public static String fusionMethodStatic

alphaStatic

public static double alphaStatic

thresholdRStatic

public static double thresholdRStatic

thresholdDisplacementRelativeStatic

public static double thresholdDisplacementRelativeStatic

thresholdDisplacementAbsoluteStatic

public static double thresholdDisplacementAbsoluteStatic

previewOnlyStatic

public static boolean previewOnlyStatic

Constructor Details

Stitch_Image_Collection

public Stitch_Image_Collection()

Method Details

run

public void run(String arg0)

Specified by:

run in interface ij.plugin.PlugIn

work

public ij.ImagePlus work(String fileName,
 boolean createPreview,
 boolean computeOverlap,
 String fusionMethod,
 String handleRGB,
 boolean showImage)

work

public ij.ImagePlus work(GridLayout gridLayout,
 boolean createPreview,
 boolean computeOverlap,
 String fileName,
 boolean showImage)

work

public ij.ImagePlus work(ArrayList<ImageInformation> imageInformationList,
 boolean createPreview,
 boolean computeOverlap,
 String fusionMethod,
 String handleRGB,
 String fileName,
 boolean showImage)

writeOutputConfiguration

protected void writeOutputConfiguration(String fileName,
 ArrayList<ImageInformation> imageInformationList)

fuseImages

public static ij.ImagePlus fuseImages(ArrayList<ImageInformation> imageInformationList,
 float[] max,
 String name,
 String fusionMethod,
 String rgbOrder,
 int dim,
 double alpha,
 boolean showOutput)

updateCalibration

protected static ij.measure.Calibration updateCalibration(ij.measure.Calibration cal,
 ij.measure.Calibration newOne)

getAndApplyMinMax

protected static float[] getAndApplyMinMax(ArrayList<ImageInformation> imageInformationList,
 int dim)

openFileRead

public static BufferedReader openFileRead(String fileName)