Package process

Class DetectionSegmentation

java.lang.Object

process.DetectionSegmentation

public class DetectionSegmentation
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static final int	DEBUG_ALL
static final int	DEBUG_ERRORONLY
static final int	DEBUG_MAIN
static double	distanceThreshold

Constructor Summary

Constructors

Constructor	Description
DetectionSegmentation()

Method Summary

Modifier and Type	Method	Description
static double	computeK(float stepsPerOctave)
static double	computeK(int stepsPerOctave)
static float	computeKWeight(float k)
static float[]	computeSigma(float k, float initialSigma)
static float[]	computeSigmaDiff(float[] sigma, float imageSigma)
static ArrayList<mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak<mpicbg.imglib.type.numeric.real.FloatType>>	extractBeadsLaPlaceImgLib(mpicbg.imglib.image.Image<mpicbg.imglib.type.numeric.real.FloatType> img, mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory<mpicbg.imglib.type.numeric.real.FloatType> oobsFactory, float imageSigma, float sigma1, float sigma2, float minPeakValue, float minInitialPeakValue, boolean findMax, boolean findMin, int localization, int iterations, double[] sigma, int[] region, int debugLevel)
static float	getDiffSigma(float sigmaA, float sigmaB)
static boolean	getRangeForFit(long[] min, long[] max, int[] range, int[] p, mpicbg.imglib.image.Image<?> img)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

DEBUG_ALL

public static final int DEBUG_ALL

See Also:

• Constant Field Values

DEBUG_MAIN

public static final int DEBUG_MAIN

See Also:

• Constant Field Values

DEBUG_ERRORONLY

public static final int DEBUG_ERRORONLY

See Also:

• Constant Field Values

distanceThreshold

public static double distanceThreshold

Constructor Details

DetectionSegmentation

public DetectionSegmentation()

Method Details

extractBeadsLaPlaceImgLib

public static ArrayList<mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussianPeak<mpicbg.imglib.type.numeric.real.FloatType>> extractBeadsLaPlaceImgLib(mpicbg.imglib.image.Image<mpicbg.imglib.type.numeric.real.FloatType> img,
 mpicbg.imglib.outofbounds.OutOfBoundsStrategyFactory<mpicbg.imglib.type.numeric.real.FloatType> oobsFactory,
 float imageSigma,
 float sigma1,
 float sigma2,
 float minPeakValue,
 float minInitialPeakValue,
 boolean findMax,
 boolean findMin,
 int localization,
 int iterations,
 double[] sigma,
 int[] region,
 int debugLevel)

getRangeForFit

public static boolean getRangeForFit(long[] min,
 long[] max,
 int[] range,
 int[] p,
 mpicbg.imglib.image.Image<?> img)

computeK

public static double computeK(float stepsPerOctave)

computeK

public static double computeK(int stepsPerOctave)

computeKWeight

public static float computeKWeight(float k)

computeSigma

public static float[] computeSigma(float k,
 float initialSigma)

getDiffSigma

public static float getDiffSigma(float sigmaA,
 float sigmaB)

computeSigmaDiff

public static float[] computeSigmaDiff(float[] sigma,
 float imageSigma)