Package plugin

Class Descriptor_based_series_registration

java.lang.Object
plugin.Descriptor_based_series_registration
All Implemented Interfaces:
ij.plugin.PlugIn
public class Descriptor_based_series_registration extends Object implements ij.plugin.PlugIn

  • Field Details

    • myURL

      protected static final String myURL
      See Also:

    • paperURL

      protected static final String paperURL
      See Also:

    • defaultImg

      public static int defaultImg

    • defaultReApply

      public static boolean defaultReApply

    • lastModels

      public static ArrayList<mpicbg.models.InvertibleBoundable> lastModels

    • lastDimensionality

      public static int lastDimensionality

    • offset

      public static float[] offset

    • oneModelPerChannel

      public static boolean oneModelPerChannel

    • transformationModels2d

      public String[] transformationModels2d

    • transformationModels3d

      public String[] transformationModels3d

    • localizationChoice

      public static String[] localizationChoice

    • defaultTransformationModel

      public static int defaultTransformationModel

    • defaultLocalization

      public static int defaultLocalization

    • defaultRegularizationTransformationModel

      public static int defaultRegularizationTransformationModel

    • defaultLambda

      public static double defaultLambda

    • defaultFixFirstTile

      public static boolean defaultFixFirstTile

    • defaultRegularize

      public static boolean defaultRegularize

    • detectionBrightness

      public static String[] detectionBrightness

    • defaultDetectionBrightness

      public static int defaultDetectionBrightness

    • defaultSigma

      public static double defaultSigma

    • defaultThreshold

      public static double defaultThreshold

    • detectionSize

      public static String[] detectionSize

    • defaultDetectionSize

      public static int defaultDetectionSize

    • detectionTypes

      public static String[] detectionTypes

    • defaultDetectionType

      public static int defaultDetectionType

    • defaultSimilarOrientation

      public static boolean defaultSimilarOrientation

    • defaultNumNeighbors

      public static int defaultNumNeighbors

    • defaultRedundancy

      public static int defaultRedundancy

    • defaultSignificance

      public static double defaultSignificance

    • defaultRansacThreshold

      public static double defaultRansacThreshold

    • globalOptTypes

      public static String[] globalOptTypes

    • defaultGlobalOpt

      public static int defaultGlobalOpt

    • defaultRange

      public static int defaultRange

    • defaultAdvancedGlobalOpt

      public static boolean defaultAdvancedGlobalOpt

    • defaultGlobalOptMaxError

      public static double defaultGlobalOptMaxError

    • defaultGlobalOptMaxIterations

      public static int defaultGlobalOptMaxIterations

    • defaultGlobalOptMaxPlateauwidth

      public static int defaultGlobalOptMaxPlateauwidth

    • minMaxChoices

      public static String[] minMaxChoices

    • defaultChannel

      public static int defaultChannel

    • resultChoices

      public static String[] resultChoices

    • defaultResult

      public static int defaultResult

    • interpolationChoices

      public static String[] interpolationChoices

    • defaultInterpolation

      public static int defaultInterpolation

    • defaultDirectory

      public static String defaultDirectory

    • defaultSigmaX

      public static double defaultSigmaX

    • defaultSigmaY

      public static double defaultSigmaY

    • defaultSigmaZ

      public static double defaultSigmaZ

    • defaultSupportX

      public static int defaultSupportX

    • defaultSupportY

      public static int defaultSupportY

    • defaultSupportZ

      public static int defaultSupportZ

    • defaultIterations

      public static int defaultIterations

  • Constructor Details

    • Descriptor_based_series_registration

      public Descriptor_based_series_registration()

  • Method Details

    • run

      public void run(String arg0)
      Specified by:
      run in interface ij.plugin.PlugIn

    • getParameters

      protected DescriptorParameters getParameters(ij.ImagePlus imp, int dimensionality)
      Ask for all other required parameters ..
      Parameters:
      dimensionality -

    • getGaussianParameters

      public static boolean getGaussianParameters(int dimensionality, DescriptorParameters params)