Package ome.logic

Class MetadataImpl

java.lang.Object

ome.logic.AbstractLevel2Service

ome.logic.MetadataImpl

All Implemented Interfaces:

ome.api.IMetadata, ome.api.ServiceInterface, ome.system.SelfConfigurableService

public class MetadataImpl
extends AbstractLevel2Service
implements ome.api.IMetadata

Implement the IMetadata I/F.

Since:

3.0-Beta4

Field Summary

Fields inherited from class ome.logic.AbstractLevel2Service

iQuery, iUpdate, metadata, queryFactory, readOnlyStatus, sec

Fields inherited from interface ome.api.IMetadata

MOVIE_MPEG_NS, MOVIE_QT_NS, MOVIE_WMV_NS, NS_IMPORTER_ARCHIVED, NS_INSIGHT_RATING, NS_INSIGHT_TAG_SET

Constructor Summary

Constructors

Constructor	Description
MetadataImpl()

Method Summary

Modifier and Type	Method	Description
java.lang.Long	countAnnotationsUsedNotOwned(java.lang.Class annotationType, long userID)
java.lang.Long	countSpecifiedAnnotations(java.lang.Class type, java.util.Set<java.lang.String> include, java.util.Set<java.lang.String> exclude, ome.parameters.Parameters options)
java.lang.Class<? extends ome.api.ServiceInterface>	getServiceInterface()	Returns the Interface implemented by this class.
java.util.Map	getTaggedObjectsCount(java.util.Set<java.lang.Long> tagIds, ome.parameters.Parameters options)
<A extends ome.model.annotations.Annotation> java.util.Set<A>	loadAnnotation(java.util.Set<java.lang.Long> annotationIds)
<T extends ome.model.IObject,A extends ome.model.annotations.Annotation> java.util.Map<java.lang.Long,java.util.Set<A>>	loadAnnotations(java.lang.Class<T> rootNodeType, java.util.Set<java.lang.Long> rootNodeIds, java.util.Set<java.lang.String> annotationTypes, java.util.Set<java.lang.Long> annotatorIds, ome.parameters.Parameters options)
java.util.Set<ome.model.IObject>	loadAnnotationsUsedNotOwned(java.lang.Class annotationType, long userID)
java.util.Set	loadChannelAcquisitionData(java.util.Set<java.lang.Long> ids)
ome.model.acquisition.Instrument	loadInstrument(long id)
java.util.Map<java.lang.Long,java.util.Set<ome.model.IObject>>	loadLogFiles(java.lang.Class<? extends ome.model.IObject> rootNodeType, java.util.Set<java.lang.Long> ids)
<A extends ome.model.annotations.Annotation> java.util.Set<A>	loadSpecifiedAnnotations(java.lang.Class type, java.util.Set<java.lang.String> include, java.util.Set<java.lang.String> exclude, ome.parameters.Parameters options)
<A extends ome.model.annotations.Annotation> java.util.Map<java.lang.Long,java.util.Set<A>>	loadSpecifiedAnnotationsLinkedTo(java.lang.Class type, java.util.Set<java.lang.String> include, java.util.Set<java.lang.String> exclude, java.lang.Class rootNodeType, java.util.Set<java.lang.Long> rootNodeIds, ome.parameters.Parameters options)
java.util.Map<java.lang.Long,java.util.Set<ome.model.IObject>>	loadTagContent(java.util.Set<java.lang.Long> tagIds, ome.parameters.Parameters options)
java.util.Set<ome.model.IObject>	loadTagSets(ome.parameters.Parameters options)
void	setIContainer(ome.api.IContainer iContainer)	IContainer bean injector.

Methods inherited from class ome.logic.AbstractLevel2Service

getBeanHelper, getExtendedMetadata, getQueryFactory, getSecuritySystem, selfConfigure, setExtendedMetadata, setQueryFactory, setQueryService, setReadOnlyStatus, setSecuritySystem, setUpdateService

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetadataImpl

public MetadataImpl()

Method Detail

getServiceInterface

public final java.lang.Class<? extends ome.api.ServiceInterface> getServiceInterface()

Returns the Interface implemented by this class.

Specified by:

getServiceInterface in interface ome.system.SelfConfigurableService

Returns:

See above.

setIContainer

public final void setIContainer(ome.api.IContainer iContainer)

IContainer bean injector. For use during configuration. Can only be called once.

Parameters:

iContainer - The value to set.

loadInstrument

@Transactional(readOnly=true)
public ome.model.acquisition.Instrument loadInstrument(long id)

Specified by:

loadInstrument in interface ome.api.IMetadata

loadChannelAcquisitionData

@Transactional(readOnly=true)
public java.util.Set loadChannelAcquisitionData(java.util.Set<java.lang.Long> ids)

Specified by:

loadChannelAcquisitionData in interface ome.api.IMetadata

loadAnnotations

@Transactional(readOnly=true)
public <T extends ome.model.IObject,A extends ome.model.annotations.Annotation> java.util.Map<java.lang.Long,java.util.Set<A>> loadAnnotations(java.lang.Class<T> rootNodeType,
                                                                                                                                                           java.util.Set<java.lang.Long> rootNodeIds,
                                                                                                                                                           java.util.Set<java.lang.String> annotationTypes,
                                                                                                                                                           java.util.Set<java.lang.Long> annotatorIds,
                                                                                                                                                           ome.parameters.Parameters options)

Specified by:

loadAnnotations in interface ome.api.IMetadata

loadSpecifiedAnnotations

@Transactional(readOnly=true)
public <A extends ome.model.annotations.Annotation> java.util.Set<A> loadSpecifiedAnnotations(java.lang.Class type,
                                                                                              java.util.Set<java.lang.String> include,
                                                                                              java.util.Set<java.lang.String> exclude,
                                                                                              ome.parameters.Parameters options)

Specified by:

loadSpecifiedAnnotations in interface ome.api.IMetadata

countSpecifiedAnnotations

@Transactional(readOnly=true)
public java.lang.Long countSpecifiedAnnotations(java.lang.Class type,
                                                java.util.Set<java.lang.String> include,
                                                java.util.Set<java.lang.String> exclude,
                                                ome.parameters.Parameters options)

Specified by:

countSpecifiedAnnotations in interface ome.api.IMetadata

loadAnnotation

@Transactional(readOnly=true)
public <A extends ome.model.annotations.Annotation> java.util.Set<A> loadAnnotation(java.util.Set<java.lang.Long> annotationIds)

Specified by:

loadAnnotation in interface ome.api.IMetadata

loadTagContent

@Transactional(readOnly=true)
public java.util.Map<java.lang.Long,java.util.Set<ome.model.IObject>> loadTagContent(java.util.Set<java.lang.Long> tagIds,
                                                                                           ome.parameters.Parameters options)

Specified by:

loadTagContent in interface ome.api.IMetadata

loadTagSets

@Transactional(readOnly=true)
public java.util.Set<ome.model.IObject> loadTagSets(ome.parameters.Parameters options)

Specified by:

loadTagSets in interface ome.api.IMetadata

getTaggedObjectsCount

@Transactional(readOnly=true)
public java.util.Map getTaggedObjectsCount(java.util.Set<java.lang.Long> tagIds,
                                           ome.parameters.Parameters options)

Specified by:

getTaggedObjectsCount in interface ome.api.IMetadata

loadAnnotationsUsedNotOwned

@Transactional(readOnly=true)
public java.util.Set<ome.model.IObject> loadAnnotationsUsedNotOwned(java.lang.Class annotationType,
                                                                    long userID)

Specified by:

loadAnnotationsUsedNotOwned in interface ome.api.IMetadata

countAnnotationsUsedNotOwned

@Transactional(readOnly=true)
public java.lang.Long countAnnotationsUsedNotOwned(java.lang.Class annotationType,
                                                   long userID)

Specified by:

countAnnotationsUsedNotOwned in interface ome.api.IMetadata

loadSpecifiedAnnotationsLinkedTo

@Transactional(readOnly=true)
public <A extends ome.model.annotations.Annotation> java.util.Map<java.lang.Long,java.util.Set<A>> loadSpecifiedAnnotationsLinkedTo(java.lang.Class type,
                                                                                                                                          java.util.Set<java.lang.String> include,
                                                                                                                                          java.util.Set<java.lang.String> exclude,
                                                                                                                                          java.lang.Class rootNodeType,
                                                                                                                                          java.util.Set<java.lang.Long> rootNodeIds,
                                                                                                                                          ome.parameters.Parameters options)

Specified by:

loadSpecifiedAnnotationsLinkedTo in interface ome.api.IMetadata

loadLogFiles

@Transactional(readOnly=true)
public java.util.Map<java.lang.Long,java.util.Set<ome.model.IObject>> loadLogFiles(java.lang.Class<? extends ome.model.IObject> rootNodeType,
                                                                                         java.util.Set<java.lang.Long> ids)

Specified by:

loadLogFiles in interface ome.api.IMetadata