Package omero.api

Class _RawPixelsStoreDisp

java.lang.Object

Ice.ObjectImpl

omero.api._RawPixelsStoreDisp

All Implemented Interfaces:

Ice.Object, java.io.Serializable, java.lang.Cloneable, _PyramidServiceOperations, _PyramidServiceOperationsNC, _RawPixelsStoreOperations, _RawPixelsStoreOperationsNC, _ServiceInterfaceOperations, _ServiceInterfaceOperationsNC, _StatefulServiceInterfaceOperations, _StatefulServiceInterfaceOperationsNC, PyramidService, RawPixelsStore, ServiceInterface, StatefulServiceInterface

Direct Known Subclasses:

_RawPixelsStoreTie, BfPixelsStoreI

public abstract class _RawPixelsStoreDisp
extends Ice.ObjectImpl
implements RawPixelsStore

Binary data provider. Initialized with the ID of a Pixels instance, this service can provide various slices, stacks, regions of the 5-dimensional (X-Y planes with multiple Z-sections and Channels over Time). The byte array returned by the getter methods and passed to the setter methods can and will be interpreted according to results of getByteWidth, isFloat, and isSigned.

Read-only caveat: Mutating methods (set*) are only available during the first access. Once the Pixels data has been successfully saved (via the save or close methods on this interface), then the data should be treated read-only. If Pixels data writing fails and the service is inadvertently closed, delete the Pixels object, and create a new one. Any partially written data will be removed.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String[]	__ids
static long	serialVersionUID

Fields inherited from interface Ice.Object

ice_staticId

Fields inherited from interface omero.api.RawPixelsStore

ice_staticId

Constructor Summary

Constructors

Constructor	Description
_RawPixelsStoreDisp()

Method Summary

Modifier and Type	Method	Description
static Ice.DispatchStatus	___calculateMessageDigest(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___findMinMax(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getByteWidth(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getCol(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getHistogram(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getHypercube(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getPixelsId(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getPixelsPath(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getPlane(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getPlaneOffset(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getPlaneRegion(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getPlaneSize(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getRegion(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getRow(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getRowOffset(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getRowSize(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getStack(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getStackOffset(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getStackSize(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getTile(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getTimepoint(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getTimepointOffset(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getTimepointSize(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getTotalSize(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___isFloat(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___isSigned(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___prepare(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___save(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setPixelsId(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setPlane(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setRegion(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setRow(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setStack(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setTile(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setTimepoint(RawPixelsStore __obj, IceInternal.Incoming __inS, Ice.Current __current)
Ice.DispatchStatus	__dispatch(IceInternal.Incoming in, Ice.Current __current)
protected void	__readImpl(IceInternal.BasicStream __is)
protected void	__writeImpl(IceInternal.BasicStream __os)
void	activate_async(AMD_StatefulServiceInterface_activate __cb)	Load a service implementation from disk if it was previously passivated.
void	calculateMessageDigest_async(AMD_RawPixelsStore_calculateMessageDigest __cb)	Calculates a SHA-1 message digest for the entire pixel store.
void	close_async(AMD_StatefulServiceInterface_close __cb)	Frees all resources -- passivated or active -- for the given stateful service and removes its name from the object adapter.
void	findMinMax_async(AMD_RawPixelsStore_findMinMax __cb, int[] channels)	Find the minimum and maximum pixel values for the specified channels by iterating over a full plane.
void	getByteWidth_async(AMD_RawPixelsStore_getByteWidth __cb)	Returns the byte width for the pixel store.
void	getCol_async(AMD_RawPixelsStore_getCol __cb, int x, int z, int c, int t)	Retrieves a particular column from this pixel store.
void	getCurrentEventContext_async(AMD_StatefulServiceInterface_getCurrentEventContext __cb)	To free clients from tracking the mapping from session to stateful service, each stateful service can returns its own context information.
void	getHistogram_async(AMD_RawPixelsStore_getHistogram __cb, int[] channels, int binCount, boolean globalRange, PlaneDef plane)	Retrieves the histogram data for the specified plane and channels.
void	getHypercube_async(AMD_RawPixelsStore_getHypercube __cb, java.util.List<java.lang.Integer> offset, java.util.List<java.lang.Integer> size, java.util.List<java.lang.Integer> step)	Retrieves a n-dimensional block from this pixel store.
void	getPixelsId_async(AMD_RawPixelsStore_getPixelsId __cb)	Returns the current Pixels set identifier.
void	getPixelsPath_async(AMD_RawPixelsStore_getPixelsPath __cb)	Returns the current Pixels path.
void	getPlane_async(AMD_RawPixelsStore_getPlane __cb, int z, int c, int t)	Retrieves a particular 2D image plane from this pixel store.
void	getPlaneOffset_async(AMD_RawPixelsStore_getPlaneOffset __cb, int z, int c, int t)	Retrieves the offset for a particular 2D image plane in this pixel store.
void	getPlaneRegion_async(AMD_RawPixelsStore_getPlaneRegion __cb, int z, int c, int t, int size, int offset)	Retrieves a region from a given plane from this pixel store.
void	getPlaneSize_async(AMD_RawPixelsStore_getPlaneSize __cb)	Retrieves the in memory size of a 2D image plane in this pixel store.
void	getRegion_async(AMD_RawPixelsStore_getRegion __cb, int size, long offset)	Retrieves a region from this pixel store.
void	getResolutionDescriptions_async(AMD_PyramidService_getResolutionDescriptions __cb)	Retrieves a more complete definition of the resolution level in question.
void	getResolutionLevel_async(AMD_PyramidService_getResolutionLevel __cb)	Retrieves the active resolution level.
void	getResolutionLevels_async(AMD_PyramidService_getResolutionLevels __cb)	Retrieves the number of resolution levels that the backing pixels pyramid contains.
void	getRow_async(AMD_RawPixelsStore_getRow __cb, int y, int z, int c, int t)	Retrieves a particular row or scanline from this pixel store.
void	getRowOffset_async(AMD_RawPixelsStore_getRowOffset __cb, int y, int z, int c, int t)	Retrieves the offset for a particular row or scanline in this pixel store.
void	getRowSize_async(AMD_RawPixelsStore_getRowSize __cb)	Retrieves the in memory size of a row or scanline of pixels in this pixel store.
void	getStack_async(AMD_RawPixelsStore_getStack __cb, int c, int t)	Retrieves the the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.
void	getStackOffset_async(AMD_RawPixelsStore_getStackOffset __cb, int c, int t)	Retrieves the offset for the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.
void	getStackSize_async(AMD_RawPixelsStore_getStackSize __cb)	Retrieves the in memory size of the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.
void	getTile_async(AMD_RawPixelsStore_getTile __cb, int z, int c, int t, int x, int y, int w, int h)	Retrieves a tile from this pixel buffer.
void	getTileSize_async(AMD_PyramidService_getTileSize __cb)	Retrieves the tile size for the pixel store.
void	getTimepoint_async(AMD_RawPixelsStore_getTimepoint __cb, int t)	Retrieves the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.
void	getTimepointOffset_async(AMD_RawPixelsStore_getTimepointOffset __cb, int t)	Retrieves the in memory size of the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.
void	getTimepointSize_async(AMD_RawPixelsStore_getTimepointSize __cb)	Retrieves the in memory size of the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.
void	getTotalSize_async(AMD_RawPixelsStore_getTotalSize __cb)	Retrieves the in memory size of the entire pixel store.
protected void	ice_copyStateFrom(Ice.Object __obj)
java.lang.String	ice_id()
java.lang.String	ice_id(Ice.Current __current)
java.lang.String[]	ice_ids()
java.lang.String[]	ice_ids(Ice.Current __current)
boolean	ice_isA(java.lang.String s)
boolean	ice_isA(java.lang.String s, Ice.Current __current)
static java.lang.String	ice_staticId()
void	isFloat_async(AMD_RawPixelsStore_isFloat __cb)	Returns whether or not the pixel buffer has floating point pixels.
void	isSigned_async(AMD_RawPixelsStore_isSigned __cb)	Returns whether or not the pixel store has signed pixels.
void	passivate_async(AMD_StatefulServiceInterface_passivate __cb)	Causes the blitz server to store the service implementation to disk to free memory.
void	prepare_async(AMD_RawPixelsStore_prepare __cb, java.util.List<java.lang.Long> pixelsIds)	Prepares the stateful service with a cache of loaded Pixels objects.
void	requiresPixelsPyramid_async(AMD_PyramidService_requiresPixelsPyramid __cb)	Whether or not this raw pixels store requires a backing pixels pyramid to provide sub-resolutions of the data.
void	save_async(AMD_RawPixelsStore_save __cb)	Save the current state of the pixels, updating the SHA1.
void	setPixelsId_async(AMD_RawPixelsStore_setPixelsId __cb, long pixelsId, boolean bypassOriginalFile)	Initializes the stateful service for a given Pixels set.
void	setPlane_async(AMD_RawPixelsStore_setPlane __cb, byte[] buf, int z, int c, int t)	Sets a particular 2D image plane in this pixel store.
void	setRegion_async(AMD_RawPixelsStore_setRegion __cb, int size, long offset, byte[] buf)	Sets a region in this pixel buffer.
void	setResolutionLevel_async(AMD_PyramidService_setResolutionLevel __cb, int resolutionLevel)	Sets the active resolution level.
void	setRow_async(AMD_RawPixelsStore_setRow __cb, byte[] buf, int y, int z, int c, int t)	Sets a particular row or scanline in this pixel store.
void	setStack_async(AMD_RawPixelsStore_setStack __cb, byte[] buf, int z, int c, int t)	Sets the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.
void	setTile_async(AMD_RawPixelsStore_setTile __cb, byte[] buf, int z, int c, int t, int x, int y, int w, int h)	Sets a tile in this pixel buffer.
void	setTimepoint_async(AMD_RawPixelsStore_setTimepoint __cb, byte[] buf, int t)	Sets the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.

Methods inherited from class Ice.ObjectImpl

___ice_id, ___ice_ids, ___ice_isA, ___ice_ping, __checkMode, __read, __read, __readImpl, __write, __write, __writeImpl, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface omero.api._PyramidServiceOperations

getResolutionDescriptions_async, getResolutionLevel_async, getResolutionLevels_async, getTileSize_async, requiresPixelsPyramid_async, setResolutionLevel_async

Methods inherited from interface omero.api._RawPixelsStoreOperations

calculateMessageDigest_async, findMinMax_async, getByteWidth_async, getCol_async, getHistogram_async, getHypercube_async, getPixelsId_async, getPixelsPath_async, getPlane_async, getPlaneOffset_async, getPlaneRegion_async, getPlaneSize_async, getRegion_async, getRow_async, getRowOffset_async, getRowSize_async, getStack_async, getStackOffset_async, getStackSize_async, getTile_async, getTimepoint_async, getTimepointOffset_async, getTimepointSize_async, getTotalSize_async, isFloat_async, isSigned_async, prepare_async, save_async, setPixelsId_async, setPlane_async, setRegion_async, setRow_async, setStack_async, setTile_async, setTimepoint_async

Methods inherited from interface omero.api._StatefulServiceInterfaceOperations

activate_async, close_async, getCurrentEventContext_async, passivate_async

Methods inherited from interface Ice.Object

__read, __read, __write, __write, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Field Detail

__ids

public static final java.lang.String[] __ids

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

Constructor Detail

_RawPixelsStoreDisp

public _RawPixelsStoreDisp()

Method Detail

ice_copyStateFrom

protected void ice_copyStateFrom(Ice.Object __obj)
                          throws java.lang.CloneNotSupportedException

Throws:

java.lang.CloneNotSupportedException

ice_isA

public boolean ice_isA(java.lang.String s)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_isA

public boolean ice_isA(java.lang.String s,
                       Ice.Current __current)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids()

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids(Ice.Current __current)

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id()

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id(Ice.Current __current)

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_staticId

public static java.lang.String ice_staticId()

getResolutionDescriptions_async

public final void getResolutionDescriptions_async(AMD_PyramidService_getResolutionDescriptions __cb)
                                           throws ServerError

Retrieves a more complete definition of the resolution level in question. The size of this array will be of length getResolutionLevels.

Specified by:

getResolutionDescriptions_async in interface _PyramidServiceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getResolutionLevel_async

public final void getResolutionLevel_async(AMD_PyramidService_getResolutionLevel __cb)
                                    throws ServerError

Retrieves the active resolution level.

Specified by:

getResolutionLevel_async in interface _PyramidServiceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getResolutionLevels_async

public final void getResolutionLevels_async(AMD_PyramidService_getResolutionLevels __cb)
                                     throws ServerError

Retrieves the number of resolution levels that the backing pixels pyramid contains.

Specified by:

getResolutionLevels_async in interface _PyramidServiceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getTileSize_async

public final void getTileSize_async(AMD_PyramidService_getTileSize __cb)
                             throws ServerError

Retrieves the tile size for the pixel store.

Specified by:

getTileSize_async in interface _PyramidServiceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

requiresPixelsPyramid_async

public final void requiresPixelsPyramid_async(AMD_PyramidService_requiresPixelsPyramid __cb)
                                       throws ServerError

Whether or not this raw pixels store requires a backing pixels pyramid to provide sub-resolutions of the data.

Specified by:

requiresPixelsPyramid_async in interface _PyramidServiceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

setResolutionLevel_async

public final void setResolutionLevel_async(AMD_PyramidService_setResolutionLevel __cb,
                                           int resolutionLevel)
                                    throws ServerError

Sets the active resolution level.

Specified by:

setResolutionLevel_async in interface _PyramidServiceOperationsNC

Parameters:

__cb - The callback object for the operation.

resolutionLevel - The resolution level to be used by the pixel buffer.

Throws:

ServerError

calculateMessageDigest_async

public final void calculateMessageDigest_async(AMD_RawPixelsStore_calculateMessageDigest __cb)
                                        throws ServerError

Calculates a SHA-1 message digest for the entire pixel store.

Specified by:

calculateMessageDigest_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

findMinMax_async

public final void findMinMax_async(AMD_RawPixelsStore_findMinMax __cb,
                                   int[] channels)
                            throws ServerError

Find the minimum and maximum pixel values for the specified channels by iterating over a full plane. In case of multi-z/t images only the 'middle' plane with index maxZ/2, respectively maxT/2 is taken into account. Note: This method can currently only handle non-pyramid images, otherwise an empty map will be returned.

Specified by:

findMinMax_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

channels - the channels

Throws:

ServerError

getByteWidth_async

public final void getByteWidth_async(AMD_RawPixelsStore_getByteWidth __cb)
                              throws ServerError

Returns the byte width for the pixel store.

Specified by:

getByteWidth_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getCol_async

public final void getCol_async(AMD_RawPixelsStore_getCol __cb,
                               int x,
                               int z,
                               int c,
                               int t)
                        throws ServerError

Retrieves a particular column from this pixel store.

Specified by:

getCol_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

x - offset across the X-axis of the pixel store.

c - offset across the C-axis of the pixel store.

Throws:

ServerError

getHistogram_async

public final void getHistogram_async(AMD_RawPixelsStore_getHistogram __cb,
                                     int[] channels,
                                     int binCount,
                                     boolean globalRange,
                                     PlaneDef plane)
                              throws ServerError

Retrieves the histogram data for the specified plane and channels. This method can currently only handle non-pyramid images.

Specified by:

getHistogram_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

channels - the channels to generate the histogram data for

plane - the plane (optional, default: whole region of first z/t plane)

Throws:

ServerError

getHypercube_async

public final void getHypercube_async(AMD_RawPixelsStore_getHypercube __cb,
                                     java.util.List<java.lang.Integer> offset,
                                     java.util.List<java.lang.Integer> size,
                                     java.util.List<java.lang.Integer> step)
                              throws ServerError

Retrieves a n-dimensional block from this pixel store.

Specified by:

getHypercube_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

offset - offset for each dimension within pixel store.

step - needed of each dimension (dependent on dimension).

Throws:

ServerError

getPixelsId_async

public final void getPixelsId_async(AMD_RawPixelsStore_getPixelsId __cb)
                             throws ServerError

Returns the current Pixels set identifier.

Specified by:

getPixelsId_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getPixelsPath_async

public final void getPixelsPath_async(AMD_RawPixelsStore_getPixelsPath __cb)
                               throws ServerError

Returns the current Pixels path.

Specified by:

getPixelsPath_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getPlane_async

public final void getPlane_async(AMD_RawPixelsStore_getPlane __cb,
                                 int z,
                                 int c,
                                 int t)
                          throws ServerError

Retrieves a particular 2D image plane from this pixel store.

Specified by:

getPlane_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

z - offset across the Z-axis of the pixel store.

t - offset across the T-axis of the pixel store.

Throws:

ServerError

getPlaneOffset_async

public final void getPlaneOffset_async(AMD_RawPixelsStore_getPlaneOffset __cb,
                                       int z,
                                       int c,
                                       int t)
                                throws ServerError

Retrieves the offset for a particular 2D image plane in this pixel store.

Specified by:

getPlaneOffset_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

z - offset across the Z-axis of the pixel buffer.

t - offset across the T-axis of the pixel buffer.

Throws:

ServerError

getPlaneRegion_async

public final void getPlaneRegion_async(AMD_RawPixelsStore_getPlaneRegion __cb,
                                       int z,
                                       int c,
                                       int t,
                                       int size,
                                       int offset)
                                throws ServerError

Retrieves a region from a given plane from this pixel store.

Specified by:

getPlaneRegion_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

z - offset across the Z-axis of the pixel store.

t - offset across the T-axis of the pixel store.

offset - the offset at which to retrieve size pixels.

Throws:

ServerError

getPlaneSize_async

public final void getPlaneSize_async(AMD_RawPixelsStore_getPlaneSize __cb)
                              throws ServerError

Retrieves the in memory size of a 2D image plane in this pixel store.

Specified by:

getPlaneSize_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getRegion_async

public final void getRegion_async(AMD_RawPixelsStore_getRegion __cb,
                                  int size,
                                  long offset)
                           throws ServerError

Retrieves a region from this pixel store.

Specified by:

getRegion_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

size - byte width of the region to retrieve.

Throws:

ServerError

getRow_async

public final void getRow_async(AMD_RawPixelsStore_getRow __cb,
                               int y,
                               int z,
                               int c,
                               int t)
                        throws ServerError

Retrieves a particular row or scanline from this pixel store.

Specified by:

getRow_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

y - offset across the Y-axis of the pixel store.

c - offset across the C-axis of the pixel store.

Throws:

ServerError

getRowOffset_async

public final void getRowOffset_async(AMD_RawPixelsStore_getRowOffset __cb,
                                     int y,
                                     int z,
                                     int c,
                                     int t)
                              throws ServerError

Retrieves the offset for a particular row or scanline in this pixel store.

Specified by:

getRowOffset_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

y - offset across the Y-axis of the pixel buffer.

c - offset across the C-axis of the pixel buffer.

Throws:

ServerError

getRowSize_async

public final void getRowSize_async(AMD_RawPixelsStore_getRowSize __cb)
                            throws ServerError

Retrieves the in memory size of a row or scanline of pixels in this pixel store.

Specified by:

getRowSize_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getStack_async

public final void getStack_async(AMD_RawPixelsStore_getStack __cb,
                                 int c,
                                 int t)
                          throws ServerError

Retrieves the the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.

Specified by:

getStack_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

c - offset across the C-axis of the pixel store.

Throws:

ServerError

getStackOffset_async

public final void getStackOffset_async(AMD_RawPixelsStore_getStackOffset __cb,
                                       int c,
                                       int t)
                                throws ServerError

Retrieves the offset for the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.

Specified by:

getStackOffset_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

c - offset across the C-axis of the pixel buffer.

Throws:

ServerError

getStackSize_async

public final void getStackSize_async(AMD_RawPixelsStore_getStackSize __cb)
                              throws ServerError

Retrieves the in memory size of the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.

Specified by:

getStackSize_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getTile_async

public final void getTile_async(AMD_RawPixelsStore_getTile __cb,
                                int z,
                                int c,
                                int t,
                                int x,
                                int y,
                                int w,
                                int h)
                         throws ServerError

Retrieves a tile from this pixel buffer.

Specified by:

getTile_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

z - offset across the Z-axis of the pixel buffer.

t - offset across the T-axis of the pixel buffer.

y - Top left corner of the tile, Y offset.

h - Height of the tile.

Throws:

ServerError

getTimepoint_async

public final void getTimepoint_async(AMD_RawPixelsStore_getTimepoint __cb,
                                     int t)
                              throws ServerError

Retrieves the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.

Specified by:

getTimepoint_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

t - offset across the T-axis of the pixel store.

Throws:

ServerError

getTimepointOffset_async

public final void getTimepointOffset_async(AMD_RawPixelsStore_getTimepointOffset __cb,
                                           int t)
                                    throws ServerError

Retrieves the in memory size of the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.

Specified by:

getTimepointOffset_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

t - offset across the T-axis of the pixel buffer.

Throws:

ServerError

getTimepointSize_async

public final void getTimepointSize_async(AMD_RawPixelsStore_getTimepointSize __cb)
                                  throws ServerError

Retrieves the in memory size of the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.

Specified by:

getTimepointSize_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getTotalSize_async

public final void getTotalSize_async(AMD_RawPixelsStore_getTotalSize __cb)
                              throws ServerError

Retrieves the in memory size of the entire pixel store.

Specified by:

getTotalSize_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

isFloat_async

public final void isFloat_async(AMD_RawPixelsStore_isFloat __cb)
                         throws ServerError

Returns whether or not the pixel buffer has floating point pixels.

Specified by:

isFloat_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

isSigned_async

public final void isSigned_async(AMD_RawPixelsStore_isSigned __cb)
                          throws ServerError

Returns whether or not the pixel store has signed pixels.

Specified by:

isSigned_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

prepare_async

public final void prepare_async(AMD_RawPixelsStore_prepare __cb,
                                java.util.List<java.lang.Long> pixelsIds)
                         throws ServerError

Prepares the stateful service with a cache of loaded Pixels objects. This method is designed to combat query overhead, where many sets of Pixels are to be read from or written to, by loading all the Pixels sets at once. Multiple calls will result in the existing cache being overwritten.

Specified by:

prepare_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

pixelsIds - Pixels IDs to cache.

Throws:

ServerError

save_async

public final void save_async(AMD_RawPixelsStore_save __cb)
                      throws ServerError

Save the current state of the pixels, updating the SHA1. This should only be called AFTER all data is successfully set. Future invocations of set methods may be disallowed. This read-only status will allow background processing (generation of thumbnails, compression, etc.) to begin. More information under RawPixelsStore. A null instance will be returned if no save was performed.

Specified by:

save_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

setPixelsId_async

public final void setPixelsId_async(AMD_RawPixelsStore_setPixelsId __cb,
                                    long pixelsId,
                                    boolean bypassOriginalFile)
                             throws ServerError

Initializes the stateful service for a given Pixels set.

Specified by:

setPixelsId_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

pixelsId - Pixels set identifier.

Throws:

ServerError

setPlane_async

public final void setPlane_async(AMD_RawPixelsStore_setPlane __cb,
                                 byte[] buf,
                                 int z,
                                 int c,
                                 int t)
                          throws ServerError

Sets a particular 2D image plane in this pixel store.

Specified by:

setPlane_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

buf - a byte array of the data comprising this 2D image plane.

c - offset across the C-axis of the pixel store.

Throws:

ServerError

setRegion_async

public final void setRegion_async(AMD_RawPixelsStore_setRegion __cb,
                                  int size,
                                  long offset,
                                  byte[] buf)
                           throws ServerError

Sets a region in this pixel buffer.

Specified by:

setRegion_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

size - byte width of the region to set.

buf - a byte array of the data. See Read-only caveat under RawPixelsStore

Throws:

ServerError

setRow_async

public final void setRow_async(AMD_RawPixelsStore_setRow __cb,
                               byte[] buf,
                               int y,
                               int z,
                               int c,
                               int t)
                        throws ServerError

Sets a particular row or scanline in this pixel store.

Specified by:

setRow_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

buf - a byte array of the data comprising this row or scanline.

z - offset across the Z-axis of the pixel store.

t - offset across the T-axis of the pixel store. See Read-only caveat under RawPixelsStore

Throws:

ServerError

setStack_async

public final void setStack_async(AMD_RawPixelsStore_setStack __cb,
                                 byte[] buf,
                                 int z,
                                 int c,
                                 int t)
                          throws ServerError

Sets the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel store.

Specified by:

setStack_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

buf - a byte array of the data comprising this stack.

t - offset across the T-axis of the pixel store. See Read-only caveat under RawPixelsStore

Throws:

ServerError

setTile_async

public final void setTile_async(AMD_RawPixelsStore_setTile __cb,
                                byte[] buf,
                                int z,
                                int c,
                                int t,
                                int x,
                                int y,
                                int w,
                                int h)
                         throws ServerError

Sets a tile in this pixel buffer.

Specified by:

setTile_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

buf - A byte array of the data.

c - offset across the C-axis of the pixel buffer.

x - Top left corner of the tile, X offset.

w - Width of the tile.

Throws:

IOException - if there is a problem writing to the pixel buffer.

BufferOverflowException - if an attempt is made to write off the end of the file. See Read-only caveat under RawPixelsStore

ServerError

setTimepoint_async

public final void setTimepoint_async(AMD_RawPixelsStore_setTimepoint __cb,
                                     byte[] buf,
                                     int t)
                              throws ServerError

Sets the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel store.

Specified by:

setTimepoint_async in interface _RawPixelsStoreOperationsNC

Parameters:

__cb - The callback object for the operation.

buf - a byte array of the data comprising this timepoint.

Throws:

ServerError

activate_async

public final void activate_async(AMD_StatefulServiceInterface_activate __cb)
                          throws ServerError

Load a service implementation from disk if it was previously passivated. It is unnecessary to call this method since activation happens automatically, but calling this may prevent a short lapse when the service is first accessed after passivation. It is safe to call this method at any time, even when the service is not passivated.

Specified by:

activate_async in interface _StatefulServiceInterfaceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

close_async

public final void close_async(AMD_StatefulServiceInterface_close __cb)
                       throws ServerError

Frees all resources -- passivated or active -- for the given stateful service and removes its name from the object adapter. Any further method calls will fail with a Ice::NoSuchObjectException. Note: with JavaEE, the close method was called publicly, and internally this called destroy(). As of the OmeroBlitz migration, this functionality has been combined.

Specified by:

close_async in interface _StatefulServiceInterfaceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getCurrentEventContext_async

public final void getCurrentEventContext_async(AMD_StatefulServiceInterface_getCurrentEventContext __cb)
                                        throws ServerError

To free clients from tracking the mapping from session to stateful service, each stateful service can returns its own context information.

Specified by:

getCurrentEventContext_async in interface _StatefulServiceInterfaceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

passivate_async

public final void passivate_async(AMD_StatefulServiceInterface_passivate __cb)
                           throws ServerError

Causes the blitz server to store the service implementation to disk to free memory. This is typically done automatically by the server when a pre-defined memory limit is reached, but can be used by the client if it clear that a stateful service will not be used for some time. Activation will happen automatically whether passivation was done manually or automatically.

Specified by:

passivate_async in interface _StatefulServiceInterfaceOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

___setPixelsId

public static Ice.DispatchStatus ___setPixelsId(RawPixelsStore __obj,
                                                IceInternal.Incoming __inS,
                                                Ice.Current __current)

___getPixelsId

public static Ice.DispatchStatus ___getPixelsId(RawPixelsStore __obj,
                                                IceInternal.Incoming __inS,
                                                Ice.Current __current)

___getPixelsPath

public static Ice.DispatchStatus ___getPixelsPath(RawPixelsStore __obj,
                                                  IceInternal.Incoming __inS,
                                                  Ice.Current __current)

___prepare

public static Ice.DispatchStatus ___prepare(RawPixelsStore __obj,
                                            IceInternal.Incoming __inS,
                                            Ice.Current __current)

___getPlaneSize

public static Ice.DispatchStatus ___getPlaneSize(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___getRowSize

public static Ice.DispatchStatus ___getRowSize(RawPixelsStore __obj,
                                               IceInternal.Incoming __inS,
                                               Ice.Current __current)

___getStackSize

public static Ice.DispatchStatus ___getStackSize(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___getTimepointSize

public static Ice.DispatchStatus ___getTimepointSize(RawPixelsStore __obj,
                                                     IceInternal.Incoming __inS,
                                                     Ice.Current __current)

___getTotalSize

public static Ice.DispatchStatus ___getTotalSize(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___getRowOffset

public static Ice.DispatchStatus ___getRowOffset(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___getPlaneOffset

public static Ice.DispatchStatus ___getPlaneOffset(RawPixelsStore __obj,
                                                   IceInternal.Incoming __inS,
                                                   Ice.Current __current)

___getStackOffset

public static Ice.DispatchStatus ___getStackOffset(RawPixelsStore __obj,
                                                   IceInternal.Incoming __inS,
                                                   Ice.Current __current)

___getTimepointOffset

public static Ice.DispatchStatus ___getTimepointOffset(RawPixelsStore __obj,
                                                       IceInternal.Incoming __inS,
                                                       Ice.Current __current)

___getTile

public static Ice.DispatchStatus ___getTile(RawPixelsStore __obj,
                                            IceInternal.Incoming __inS,
                                            Ice.Current __current)

___getHypercube

public static Ice.DispatchStatus ___getHypercube(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___getRegion

public static Ice.DispatchStatus ___getRegion(RawPixelsStore __obj,
                                              IceInternal.Incoming __inS,
                                              Ice.Current __current)

___getRow

public static Ice.DispatchStatus ___getRow(RawPixelsStore __obj,
                                           IceInternal.Incoming __inS,
                                           Ice.Current __current)

___getCol

public static Ice.DispatchStatus ___getCol(RawPixelsStore __obj,
                                           IceInternal.Incoming __inS,
                                           Ice.Current __current)

___getPlane

public static Ice.DispatchStatus ___getPlane(RawPixelsStore __obj,
                                             IceInternal.Incoming __inS,
                                             Ice.Current __current)

___getPlaneRegion

public static Ice.DispatchStatus ___getPlaneRegion(RawPixelsStore __obj,
                                                   IceInternal.Incoming __inS,
                                                   Ice.Current __current)

___getStack

public static Ice.DispatchStatus ___getStack(RawPixelsStore __obj,
                                             IceInternal.Incoming __inS,
                                             Ice.Current __current)

___getTimepoint

public static Ice.DispatchStatus ___getTimepoint(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___setTile

public static Ice.DispatchStatus ___setTile(RawPixelsStore __obj,
                                            IceInternal.Incoming __inS,
                                            Ice.Current __current)

___setRegion

public static Ice.DispatchStatus ___setRegion(RawPixelsStore __obj,
                                              IceInternal.Incoming __inS,
                                              Ice.Current __current)

___setRow

public static Ice.DispatchStatus ___setRow(RawPixelsStore __obj,
                                           IceInternal.Incoming __inS,
                                           Ice.Current __current)

___setPlane

public static Ice.DispatchStatus ___setPlane(RawPixelsStore __obj,
                                             IceInternal.Incoming __inS,
                                             Ice.Current __current)

___setStack

public static Ice.DispatchStatus ___setStack(RawPixelsStore __obj,
                                             IceInternal.Incoming __inS,
                                             Ice.Current __current)

___setTimepoint

public static Ice.DispatchStatus ___setTimepoint(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___getHistogram

public static Ice.DispatchStatus ___getHistogram(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___findMinMax

public static Ice.DispatchStatus ___findMinMax(RawPixelsStore __obj,
                                               IceInternal.Incoming __inS,
                                               Ice.Current __current)

___getByteWidth

public static Ice.DispatchStatus ___getByteWidth(RawPixelsStore __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___isSigned

public static Ice.DispatchStatus ___isSigned(RawPixelsStore __obj,
                                             IceInternal.Incoming __inS,
                                             Ice.Current __current)

___isFloat

public static Ice.DispatchStatus ___isFloat(RawPixelsStore __obj,
                                            IceInternal.Incoming __inS,
                                            Ice.Current __current)

___calculateMessageDigest

public static Ice.DispatchStatus ___calculateMessageDigest(RawPixelsStore __obj,
                                                           IceInternal.Incoming __inS,
                                                           Ice.Current __current)

___save

public static Ice.DispatchStatus ___save(RawPixelsStore __obj,
                                         IceInternal.Incoming __inS,
                                         Ice.Current __current)

__dispatch

public Ice.DispatchStatus __dispatch(IceInternal.Incoming in,
                                     Ice.Current __current)

Specified by:

__dispatch in interface Ice.Object

Overrides:

__dispatch in class Ice.ObjectImpl

__writeImpl

protected void __writeImpl(IceInternal.BasicStream __os)

Overrides:

__writeImpl in class Ice.ObjectImpl

__readImpl

protected void __readImpl(IceInternal.BasicStream __is)

Overrides:

__readImpl in class Ice.ObjectImpl