Package sc.fiji.snt.viewer.geditor

Class GraphEditor

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

sc.fiji.snt.viewer.geditor.GraphEditor

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible

public class GraphEditor
extends JPanel

Main editor panel for interactive visualization and manipulation of SNT graphs. Provides layout algorithms, styling controls, undo/redo functionality, and integration with data analysis tools for graph-based visualization of neuronal structures.

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
protected boolean	animateLayoutChange
protected String	appTitle
protected final com.mxgraph.util.mxEventSource.mxIEventListener	changeTracker
protected File	currentFile
protected com.mxgraph.swing.mxGraphComponent	graphComponent
protected com.mxgraph.swing.mxGraphOutline	graphOutline
protected com.mxgraph.swing.handler.mxKeyboardHandler	keyboardHandler
protected JTabbedPane	libraryPane
protected boolean	modified	Flag indicating whether the current graph has been modified
protected com.mxgraph.swing.handler.mxRubberband	rubberband
protected JLabel	statusBar
protected sc.fiji.snt.viewer.geditor.EditorToolBar	toolbar
protected final com.mxgraph.util.mxEventSource.mxIEventListener	undoHandler
protected com.mxgraph.util.mxUndoManager	undoManager

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
GraphEditor(String appTitle, com.mxgraph.swing.mxGraphComponent component)

Method Summary

Modifier and Type	Method	Description
void	applyLayout(com.mxgraph.layout.mxIGraphLayout layout)
Action	bind(String name, Action action)
Action	bind(String name, Action action, String ignored)
Action	bind(String name, Action action, Icon icon)
JFrame	createFrame(org.scijava.Context context)
protected com.mxgraph.layout.mxIGraphLayout	createLayout(String ident)	Creates a layout instance for the given identifier.
protected JLabel	createStatusBar()
protected sc.fiji.snt.viewer.geditor.EditorToolBar	createToolBar()
protected com.mxgraph.util.mxUndoManager	createUndoManager()
void	exit()
JSplitPane	getBottomPanel()
sc.fiji.snt.viewer.geditor.EditorConsole	getConsole()
File	getCurrentFile()
com.mxgraph.swing.mxGraphComponent	getGraphComponent()
com.mxgraph.swing.mxGraphOutline	getGraphOutline()
JTabbedPane	getLibraryPane()
com.mxgraph.util.mxUndoManager	getUndoManager()
Action	graphLayout(String key)	Creates an action that executes the specified layout.
protected void	installHandlers()
protected void	installListeners()
boolean	isModified()
protected void	refresh()
void	setBottomPaneVisible(boolean visible)
void	setContext(org.scijava.Context context)
void	setCurrentFile(File file)
void	setLegend(String colorTable, double min, double max)
void	setLegend(String colorTable, String label, double min, double max)
void	setLegend(net.imglib2.display.ColorTable colorTable, String label, double min, double max)
protected void	setLookAndFeel(String lookAndFeelName)
void	setModified(boolean modified)
void	status(String msg)
void	status(String msg, boolean error)
void	updateTitle()

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

graphComponent

protected com.mxgraph.swing.mxGraphComponent graphComponent

graphOutline

protected com.mxgraph.swing.mxGraphOutline graphOutline

libraryPane

protected JTabbedPane libraryPane

undoManager

protected com.mxgraph.util.mxUndoManager undoManager

appTitle

protected String appTitle

statusBar

protected JLabel statusBar

currentFile

protected File currentFile

rubberband

protected com.mxgraph.swing.handler.mxRubberband rubberband

keyboardHandler

protected com.mxgraph.swing.handler.mxKeyboardHandler keyboardHandler

toolbar

protected sc.fiji.snt.viewer.geditor.EditorToolBar toolbar

animateLayoutChange

protected boolean animateLayoutChange

modified

protected boolean modified

Flag indicating whether the current graph has been modified

undoHandler

protected final com.mxgraph.util.mxEventSource.mxIEventListener undoHandler

changeTracker

protected final com.mxgraph.util.mxEventSource.mxIEventListener changeTracker

Constructor Details

GraphEditor

public GraphEditor(String appTitle,
 com.mxgraph.swing.mxGraphComponent component)

Method Details

setContext

public void setContext(org.scijava.Context context)

createUndoManager

protected com.mxgraph.util.mxUndoManager createUndoManager()

installHandlers

protected void installHandlers()

createToolBar

protected sc.fiji.snt.viewer.geditor.EditorToolBar createToolBar()

createStatusBar

protected JLabel createStatusBar()

refresh

protected void refresh()

installListeners

protected void installListeners()

setCurrentFile

public void setCurrentFile(File file)

getCurrentFile

public File getCurrentFile()

setModified

public void setModified(boolean modified)

isModified

public boolean isModified()

Returns:

whether the current graph has been modified

getGraphComponent

public com.mxgraph.swing.mxGraphComponent getGraphComponent()

getGraphOutline

public com.mxgraph.swing.mxGraphOutline getGraphOutline()

getLibraryPane

public JTabbedPane getLibraryPane()

getUndoManager

public com.mxgraph.util.mxUndoManager getUndoManager()

bind

public Action bind(String name,
 Action action)

Parameters:

name -

action -

Returns:

a new Action bound to the specified string name

bind

public Action bind(String name,
 Action action,
 String ignored)

Parameters:

name -

action -

Returns:

a new Action bound to the specified string name

bind

public Action bind(String name,
 Action action,
 Icon icon)

status

public void status(String msg)

status

public void status(String msg,
 boolean error)

updateTitle

public void updateTitle()

exit

public void exit()

setLookAndFeel

protected void setLookAndFeel(String lookAndFeelName)

createFrame

public JFrame createFrame(org.scijava.Context context)

graphLayout

public Action graphLayout(String key)

Creates an action that executes the specified layout.

Parameters:

key - Key to be used for getting the label from mxResources and also to create the layout instance for the commercial graph editor example.

Returns:

an action that executes the specified layout

applyLayout

public void applyLayout(com.mxgraph.layout.mxIGraphLayout layout)

createLayout

protected com.mxgraph.layout.mxIGraphLayout createLayout(String ident)

Creates a layout instance for the given identifier.

setBottomPaneVisible

public void setBottomPaneVisible(boolean visible)

getConsole

public sc.fiji.snt.viewer.geditor.EditorConsole getConsole()

setLegend

public void setLegend(String colorTable,
 double min,
 double max)

setLegend

public void setLegend(String colorTable,
 String label,
 double min,
 double max)

setLegend

public void setLegend(net.imglib2.display.ColorTable colorTable,
 String label,
 double min,
 double max)

getBottomPanel

public JSplitPane getBottomPanel()