Uses of Record Class
sc.fiji.snt.tracing.auto.SomaUtils.SomaResult

Packages that use SomaUtils.SomaResult

Package	Description
sc.fiji.snt.tracing.auto	Automatic neuron tracing algorithms that reconstruct complete neuronal morphologies from images without user interaction.

Uses of SomaUtils.SomaResult in sc.fiji.snt.tracing.auto

Methods in sc.fiji.snt.tracing.auto that return SomaUtils.SomaResult

Modifier and Type	Method	Description
static SomaUtils.SomaResult	SomaUtils.detectSoma(net.imagej.ImgPlus<?> source)	Full soma detection using ImgPlus with automatic thresholding.
static SomaUtils.SomaResult	SomaUtils.detectSoma(net.imagej.ImgPlus<?> source, double threshold, int zSlice)	Full soma detection using ImgPlus with spacing extracted automatically.
static SomaUtils.SomaResult	SomaUtils.detectSoma(net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> source, double threshold, double[] spacing)	Full soma detection: finds center, floods region, extracts contour.
static SomaUtils.SomaResult	SomaUtils.detectSomaAt(net.imagej.ImgPlus<?> source, long seedX, long seedY, double threshold, int zSlice)	Detects soma at a specific seed point using ImgPlus.
static SomaUtils.SomaResult	SomaUtils.detectSomaAt(net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> source, long seedX, long seedY, double threshold, double[] spacing)	Detects soma at a specific seed point.

Methods in sc.fiji.snt.tracing.auto that return types with arguments of type SomaUtils.SomaResult

Modifier and Type	Method	Description
static List<SomaUtils.SomaResult>	SomaUtils.detectAllSomas(net.imagej.ImgPlus<?> source)	Detects all somas using ImgPlus with default settings.
static List<SomaUtils.SomaResult>	SomaUtils.detectAllSomas(net.imagej.ImgPlus<?> source, double threshold, int zSlice, double minRadius)	Detects all somas using ImgPlus with automatic spacing.
static List<SomaUtils.SomaResult>	SomaUtils.detectAllSomas(net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> source, double threshold, double[] spacing)	Detects all somas using default minimum radius.
static List<SomaUtils.SomaResult>	SomaUtils.detectAllSomas(net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> source, double threshold, double[] spacing, double minRadius)	Detects all somas using EDT local maxima approach.