Package sc.fiji.snt.plugin.ij1

Class SummarizeSkeleton

java.lang.Object

sc.fiji.snt.plugin.ij1.SummarizeSkeleton

All Implemented Interfaces:

ij.plugin.filter.PlugInFilter

public class SummarizeSkeleton
extends Object
implements ij.plugin.filter.PlugInFilter

This class implements the Summarize Skeleton command. It takes a skeletonized image and aggregates combined statistics for all the connected components in the image. Measurements are displayed to a dedicated table. Useful when a skeletonized mask of a single structure is not contiguous but still needs to be measured as a single structure. It was originally part of hINAPT.

Author:

Tiago Ferreira

Field Summary

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor	Description
SummarizeSkeleton()

Method Summary

Modifier and Type	Method	Description
void	run(ij.process.ImageProcessor ignored)
int	setup(String arg, ij.ImagePlus imp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SummarizeSkeleton

public SummarizeSkeleton()

Method Details

setup

public int setup(String arg,
 ij.ImagePlus imp)

Specified by:

setup in interface ij.plugin.filter.PlugInFilter

run

public void run(ij.process.ImageProcessor ignored)

Specified by:

run in interface ij.plugin.filter.PlugInFilter