Package sc.fiji.snt.plugin

Class ShollAnalysisTreeInteractiveCmd

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

sc.fiji.snt.gui.cmds.CommonDynamicCmd

sc.fiji.snt.plugin.ShollAnalysisTreeCmd

sc.fiji.snt.plugin.ShollAnalysisTreeInteractiveCmd

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.command.Interactive, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class ShollAnalysisTreeInteractiveCmd
extends ShollAnalysisTreeCmd
implements org.scijava.command.Interactive

Interactive command for performing Sholl analysis on reconstructed neuronal tracings, with real-time parameter adjustment and interactive visualization.

Author:

Tiago Ferreira

Field Summary

Fields inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

EMPTY_LABEL, HEADER_HTML, sntService, ui, uiService

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor	Description
ShollAnalysisTreeInteractiveCmd()

Method Summary

Modifier and Type	Method	Description
void	run()
protected void	runAnalysis()

Methods inherited from class sc.fiji.snt.plugin.ShollAnalysisTreeCmd

cancel, getCenterFromChoice, init, lutChoiceChanged, main, preview

Methods inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

cancel, error, init, isCanceled, msg, notifyExternalDataLoaded, notifyLoadingEnd, notifyLoadingStart, resetUI, resetUI, resetUI, status

Methods inherited from class org.scijava.command.DynamicCommand

context, getCancelReason, getContext, getInfo, getInput, getOutput, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.Module

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Constructor Details

ShollAnalysisTreeInteractiveCmd

public ShollAnalysisTreeInteractiveCmd()

Method Details

runAnalysis

protected void runAnalysis()
                    throws InterruptedException

Throws:

InterruptedException

run

public void run()

Specified by:

run in interface org.scijava.module.MutableModule

Specified by:

run in interface Runnable

Overrides:

run in class ShollAnalysisTreeCmd