Package sc.fiji.snt.plugin

Class BinaryTracerCmd

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

sc.fiji.snt.gui.cmds.CommonDynamicCmd

sc.fiji.snt.plugin.BinaryTracerCmd

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class BinaryTracerCmd
extends CommonDynamicCmd

Command providing a GUI for BinaryTracer, SNT's autotracing class.

Author:

Cameron Arshadi, Tiago Ferreira

Field Summary

Fields

Modifier and Type	Field	Description
static final String	ROI_CENTROID
static final String	ROI_CENTROID_WEIGHTED
static final String	ROI_CONTAINED
static final String	ROI_EDGE
static final String	ROI_UNSET

Fields inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

EMPTY_LABEL, HEADER_HTML, snt, sntService, statusService, ui, uiService

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor	Description
BinaryTracerCmd()

Method Summary

Modifier and Type	Method	Description
void	cancel()
void	cancel(String reason)
protected void	error(String msg)
void	run()
void	setPruneMode(BinaryTracer skConverter)

Methods inherited from class sc.fiji.snt.gui.cmds.CommonDynamicCmd

init, isCanceled, msg, notifyExternalDataLoaded, notifyLoadingEnd, notifyLoadingStart, resetUI, resetUI, resetUI, status

Methods inherited from class org.scijava.command.DynamicCommand

context, getCancelReason, getContext, getInfo, getInput, getOutput, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.Module

getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, preview, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Field Details

ROI_UNSET

public static final String ROI_UNSET

See Also:

• Constant Field Values

ROI_CONTAINED

public static final String ROI_CONTAINED

See Also:

• Constant Field Values

ROI_EDGE

public static final String ROI_EDGE

See Also:

• Constant Field Values

ROI_CENTROID

public static final String ROI_CENTROID

See Also:

• Constant Field Values

ROI_CENTROID_WEIGHTED

public static final String ROI_CENTROID_WEIGHTED

See Also:

• Constant Field Values

Constructor Details

BinaryTracerCmd

public BinaryTracerCmd()

Method Details

cancel

public void cancel()

Specified by:

cancel in interface org.scijava.module.Module

Overrides:

cancel in class CommonDynamicCmd

cancel

public void cancel(String reason)

Specified by:

cancel in interface org.scijava.Cancelable

Overrides:

cancel in class CommonDynamicCmd

run

public void run()

Specified by:

run in interface org.scijava.module.MutableModule

Specified by:

run in interface Runnable

Overrides:

run in class CommonDynamicCmd

setPruneMode

public void setPruneMode(BinaryTracer skConverter)

error

protected void error(String msg)

Overrides:

error in class CommonDynamicCmd