Package sc.fiji.snt.analysis.sholl.math

Class Comparator

java.lang.Object

org.scijava.AbstractContextual

org.scijava.command.ContextCommand

sc.fiji.snt.analysis.sholl.math.Comparator

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.plugin.SciJavaPlugin

public class Comparator
extends org.scijava.command.ContextCommand

Compares two profiles statistically.

Author:

Tiago Ferreira

Constructor Summary

Constructors

Constructor	Description
Comparator(Profile profile1, Profile profile2)

Method Summary

Modifier and Type	Method	Description
double	getKSTest()	Computes the p-value, or observed significance level, of a two-sample Kolmogorov-Smirnov test evaluating the null hypothesis that x and y are samples drawn from the same probability distribution.
org.apache.commons.math3.stat.regression.SimpleRegression	getRegression()
void	run()

Methods inherited from class org.scijava.command.ContextCommand

cancel, getCancelReason, isCanceled

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.Contextual

setContext

Constructor Details

Comparator

public Comparator(Profile profile1,
 Profile profile2)

Method Details

run

public void run()
         throws org.scijava.NullContextException

Throws:

org.scijava.NullContextException

getRegression

public org.apache.commons.math3.stat.regression.SimpleRegression getRegression()

getKSTest

public double getKSTest()

Computes the p-value, or observed significance level, of a two-sample Kolmogorov-Smirnov test evaluating the null hypothesis that x and y are samples drawn from the same probability distribution.

Returns:

the p-value associated with the null hypothesis that the two profiles represent samples from the same distribution