Uses of Class
sc.fiji.snt.analysis.PeripathDetector.Config

Packages that use PeripathDetector.Config

Package	Description
sc.fiji.snt.analysis	Analysis of Trees.

Uses of PeripathDetector.Config in sc.fiji.snt.analysis

Methods in sc.fiji.snt.analysis that return PeripathDetector.Config

Modifier and Type	Method	Description
PeripathDetector.Config	PeripathDetector.Config.assignToNearestPath(boolean b)	Sets assignToNearestPath.
PeripathDetector.Config	PeripathDetector.Config.innerRadius(double v)	Sets innerRadius.
PeripathDetector.Config	PeripathDetector.Config.innerRadiusMultiplier(double v)	Sets innerRadiusMultiplier.
PeripathDetector.Config	PeripathDetector.Config.maxSectionSize(int v)	Sets maxSectionSize.
PeripathDetector.Config	PeripathDetector.Config.mergingDistance(double v)	Sets mergingDistance.
PeripathDetector.Config	PeripathDetector.Config.outerRadius(double v)	Sets outerRadius.
PeripathDetector.Config	PeripathDetector.Config.outerRadiusMultiplier(double v)	Sets outerRadiusMultiplier.
PeripathDetector.Config	PeripathDetector.Config.prominence(double v)	Sets prominence.

Methods in sc.fiji.snt.analysis with parameters of type PeripathDetector.Config

Modifier and Type	Method	Description
static void	PeripathDetector.createTorusMask(Collection<Path> paths, ij.ImagePlus output, PeripathDetector.Config cfg, double fillValue)	Creates a binary torus mask around the given paths, writing into an ImagePlus.
static <T extends net.imglib2.type.numeric.RealType<T>> void	PeripathDetector.createTorusMask(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<T> output, PeripathDetector.Config cfg, double fillValue)	Creates a binary torus mask around the given paths.
static <T extends net.imglib2.type.numeric.RealType<T>> List<PeripathDetector.Detection>	PeripathDetector.detect(Collection<Path> paths, net.imglib2.RandomAccessibleInterval<? extends net.imglib2.type.numeric.RealType<?>> img, PeripathDetector.Config cfg)	Detects intensity maxima along the given paths.