Package sc.fiji.snt

Class CurationManager

java.lang.Object

sc.fiji.snt.CurationManager

All Implemented Interfaces:

PlausibilityMonitor.WarningListener

public class CurationManager
extends Object
implements PlausibilityMonitor.WarningListener

Implements the Curation Assistant pane in SNT's UI. Provides morphological plausibility feedback during tracing and editing operations.

The panel is organized into:

• Live Monitoring Parameters configures checks that run inline during interactive tracing (fork, segment, finalization hooks).
• On-demand Monitoring Parameters configures heavier checks that scan the full reconstruction.
• Action buttons toggle live monitoring on/off, or trigger a full on-demand scan (which runs both parameter sets across all paths).
• Warnings table displays current issues; double-click to navigate to the issue location.

Author:

Tiago Ferreira

See Also:

• PlausibilityMonitor
• PlausibilityCheck

Constructor Summary

Constructors

Constructor	Description
CurationManager(SNTUI sntui, PlausibilityMonitor monitor)

Method Summary

Modifier and Type	Method	Description
void	dispose()	Unregisters this panel from the monitor.
JPanel	getPanel()	Builds and returns the panel to be added as a tab in SNTUI.
String	getStatusSummary()	Generates a summary string for the status bar: shows the most severe warning, suitable for display in the QUERY_KEEP status text.
void	refreshFromMonitor()	Refreshes all UI controls (spinners, checkboxes, toggle) from the monitor's current state.
protected void	registerCommands(SNTCommandFinder cmdFinder)	Registers curation commands in the SNT Command Finder.
void	warningsUpdated(List<PlausibilityCheck.Warning> warnings)	Called whenever the monitor's warning list is updated.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CurationManager

public CurationManager(SNTUI sntui,
 PlausibilityMonitor monitor)

Method Details

dispose

public void dispose()

Unregisters this panel from the monitor. Should be called when the panel is removed from the UI to avoid listener leaks.

getPanel

public JPanel getPanel()

Builds and returns the panel to be added as a tab in SNTUI.

registerCommands

protected void registerCommands(SNTCommandFinder cmdFinder)

Registers curation commands in the SNT Command Finder.

Parameters:

cmdFinder - the command finder instance

refreshFromMonitor

public void refreshFromMonitor()

Refreshes all UI controls (spinners, checkboxes, toggle) from the monitor's current state. Called after loading a preset or restoring a session.

warningsUpdated

public void warningsUpdated(List<PlausibilityCheck.Warning> warnings)

Description copied from interface: PlausibilityMonitor.WarningListener

Called whenever the monitor's warning list is updated.

Specified by:

warningsUpdated in interface PlausibilityMonitor.WarningListener

Parameters:

warnings - the current (immutable) list of warnings

getStatusSummary

public String getStatusSummary()

Generates a summary string for the status bar: shows the most severe warning, suitable for display in the QUERY_KEEP status text.

Returns:

the summary string, or null if no warnings exist