Package loci.formats.in.LeicaMicrosystemsMetadata

Class MetadataStoreInitializer

java.lang.Object

loci.formats.in.LeicaMicrosystemsMetadata.MetadataStoreInitializer

public class MetadataStoreInitializer
extends Object

This class initializes the MetadataStore of a given LMSFileReader, using its MetadataTempBuffer

Constructor Summary

Constructors

Constructor	Description
MetadataStoreInitializer(LMSFileReader reader)

Method Summary

Modifier and Type	Method	Description
Length	checkFlip(boolean flip, Length pos)
int	getTileIndex(int coreIndex)
void	initDetectorModels(int series)	Adds detector and channel color details from the reader's MetadataTempBuffer to its MetadataStore
void	initFilterModels(int series)	Adds filter details from the reader's MetadataTempBuffer to its MetadataStore
void	initImageDetails(int series)	Adds image and ROI details from the reader's MetadataTempBuffer to its MetadataStore
void	initLasers(int series)	Adds laser and light source details from the reader's MetadataTempBuffer to its MetadataStore
void	initMetadataStore()	Translates metadata information from the reader's MetadataTempBuffer and adds it to its MetadataStore
void	initStandDetails(int series)	Adds microscope and objective details from the reader's MetadataTempBuffer to its MetadataStore

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MetadataStoreInitializer

public MetadataStoreInitializer(LMSFileReader reader)

Method Details

initStandDetails

public void initStandDetails(int series)
                      throws FormatException

Adds microscope and objective details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initFilterModels

public void initFilterModels(int series)

Adds filter details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initLasers

public void initLasers(int series)

Adds laser and light source details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initDetectorModels

public void initDetectorModels(int series)

Adds detector and channel color details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initImageDetails

public void initImageDetails(int series)

Adds image and ROI details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initMetadataStore

public void initMetadataStore()
                       throws FormatException,
IOException

Translates metadata information from the reader's MetadataTempBuffer and adds it to its MetadataStore

Throws:

FormatException

IOException

getTileIndex

public int getTileIndex(int coreIndex)

checkFlip

public Length checkFlip(boolean flip,
 Length pos)