Package loci.formats.in.LeicaMicrosystemsMetadata

Class LMSMetadataExtractor

java.lang.Object

loci.formats.in.LeicaMicrosystemsMetadata.LMSMetadataExtractor

public class LMSMetadataExtractor
extends Object

This class extracts metadata information from Leica Microsystems image XML and stores it in the reader's CoreMetadata and MetadataTempBuffer

Constructor Summary

Constructors

Constructor	Description
LMSMetadataExtractor(LMSFileReader reader)

Method Summary

Modifier and Type	Method	Description
static int	getChannelIndex(Element filterSetting)
double	parseDouble(String value)
int	parseInt(String value)
long	parseLong(String value)
void	translateAttachmentNodes(Element imageNode, int image)	Extracts information from dimension descriptions and writes it to reader's MetadataTempBuffer
void	translateChannelDescriptions(Element imageNode, int coreIndex)	Extracts i.a.
void	translateDetectors(Element imageNode, int image)	Extracts detector information and writes it to reader's MetadataTempBuffer
void	translateFilterSettings(Element imageNode, int image)	Extracts filter information and writes it to reader's MetadataTempBuffer
void	translateImage(Element image, int i)	Extracts information from element node and writes it to reader's CoreMetadata and MetadataTempBuffer
void	translateLaserLines(Element imageNode, int image)	Extracts laser information and writes it to reader's MetadataTempBuffer
void	translateMetadata(List<LMSImageXmlDocument> docs)	Extracts all information from Leica image xml Documents and writes it to reader's CoreMetadata and MetadataTempBuffer
void	translateROIs(Element imageNode, int image)	Extracts ROIs and writes them to reader's MetadataTempBuffer
void	translateScannerSettings(Element imageNode, int image)	Extracts scanner information and writes it to reader's CoreMetadata and MetadataTempBuffer
void	translateSingleROIs(Element imageNode, int image)	Extracts single ROIs and writes them to reader's MetadataTempBuffer
void	translateTimestamps(Element imageNode, int image)	Extracts timestamps and writes them to reader's MetadataTempBuffer

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LMSMetadataExtractor

public LMSMetadataExtractor(LMSFileReader reader)

Method Details

translateMetadata

public void translateMetadata(List<LMSImageXmlDocument> docs)
                       throws FormatException,
IOException

Extracts all information from Leica image xml Documents and writes it to reader's CoreMetadata and MetadataTempBuffer

Parameters:

docs - list of Leica xml documents

Throws:

FormatException

IOException

translateImage

public void translateImage(Element image,
 int i)
                    throws FormatException

Extracts information from element node and writes it to reader's CoreMetadata and MetadataTempBuffer

Parameters:

image - node with tag name "element" from Leica XML

i - image /core index

Throws:

FormatException

translateChannelDescriptions

public void translateChannelDescriptions(Element imageNode,
 int coreIndex)
                                  throws FormatException

Extracts i.a. channel number and luts from channel descriptions and writes it to reader's CoreMetadata and MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

coreIndex -

Throws:

FormatException

translateAttachmentNodes

public void translateAttachmentNodes(Element imageNode,
 int image)
                              throws FormatException

Extracts information from dimension descriptions and writes it to reader's MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

translateScannerSettings

public void translateScannerSettings(Element imageNode,
 int image)
                              throws FormatException

Extracts scanner information and writes it to reader's CoreMetadata and MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

translateFilterSettings

public void translateFilterSettings(Element imageNode,
 int image)
                             throws FormatException

Extracts filter information and writes it to reader's MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

translateTimestamps

public void translateTimestamps(Element imageNode,
 int image)
                         throws FormatException

Extracts timestamps and writes them to reader's MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

translateLaserLines

public void translateLaserLines(Element imageNode,
 int image)
                         throws FormatException

Extracts laser information and writes it to reader's MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

translateROIs

public void translateROIs(Element imageNode,
 int image)
                   throws FormatException

Extracts ROIs and writes them to reader's MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

translateSingleROIs

public void translateSingleROIs(Element imageNode,
 int image)
                         throws FormatException

Extracts single ROIs and writes them to reader's MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

translateDetectors

public void translateDetectors(Element imageNode,
 int image)
                        throws FormatException

Extracts detector information and writes it to reader's MetadataTempBuffer

Parameters:

imageNode - Image node from Leica xml

image - image / core index

Throws:

FormatException

parseLong

public long parseLong(String value)

parseInt

public int parseInt(String value)

parseDouble

public double parseDouble(String value)

getChannelIndex

public static int getChannelIndex(Element filterSetting)