Package loci.formats.meta

Interface MetadataRetrieve

All Superinterfaces:

BaseMetadata, MetadataRetrieve

All Known Subinterfaces:

IMetadata, OMEXMLMetadata

All Known Implementing Classes:

AbstractOMEXMLMetadata, DummyMetadata, OMEPyramidStore, OMEXMLMetadataImpl

public interface MetadataRetrieve
extends MetadataRetrieve

Method Summary

Methods inherited from interface ome.xml.meta.MetadataRetrieve

getArcAnnotationRef, getArcID, getArcLotNumber, getArcManufacturer, getArcModel, getArcPower, getArcSerialNumber, getArcType, getBinaryFileBinData, getBinaryFileBinDataBigEndian, getBinaryFileBinDataCompression, getBinaryFileBinDataLength, getBinaryFileFileName, getBinaryFileMIMEType, getBinaryFileSize, getBinaryOnlyMetadataFile, getBinaryOnlyUUID, getBooleanAnnotationAnnotationCount, getBooleanAnnotationAnnotationRef, getBooleanAnnotationAnnotator, getBooleanAnnotationCount, getBooleanAnnotationDescription, getBooleanAnnotationID, getBooleanAnnotationNamespace, getBooleanAnnotationValue, getChannelAcquisitionMode, getChannelAnnotationRef, getChannelAnnotationRefCount, getChannelColor, getChannelContrastMethod, getChannelCount, getChannelEmissionWavelength, getChannelExcitationWavelength, getChannelFilterSetRef, getChannelFluor, getChannelID, getChannelIlluminationType, getChannelLightSourceSettingsAttenuation, getChannelLightSourceSettingsID, getChannelLightSourceSettingsWavelength, getChannelName, getChannelNDFilter, getChannelPinholeSize, getChannelPockelCellSetting, getChannelSamplesPerPixel, getCommentAnnotationAnnotationCount, getCommentAnnotationAnnotationRef, getCommentAnnotationAnnotator, getCommentAnnotationCount, getCommentAnnotationDescription, getCommentAnnotationID, getCommentAnnotationNamespace, getCommentAnnotationValue, getCreator, getDatasetAnnotationRef, getDatasetAnnotationRefCount, getDatasetCount, getDatasetDescription, getDatasetExperimenterGroupRef, getDatasetExperimenterRef, getDatasetID, getDatasetImageRef, getDatasetImageRefCount, getDatasetName, getDatasetRefCount, getDetectorAmplificationGain, getDetectorAnnotationRef, getDetectorAnnotationRefCount, getDetectorCount, getDetectorGain, getDetectorID, getDetectorLotNumber, getDetectorManufacturer, getDetectorModel, getDetectorOffset, getDetectorSerialNumber, getDetectorSettingsBinning, getDetectorSettingsGain, getDetectorSettingsID, getDetectorSettingsIntegration, getDetectorSettingsOffset, getDetectorSettingsReadOutRate, getDetectorSettingsVoltage, getDetectorSettingsZoom, getDetectorType, getDetectorVoltage, getDetectorZoom, getDichroicAnnotationRef, getDichroicAnnotationRefCount, getDichroicCount, getDichroicID, getDichroicLotNumber, getDichroicManufacturer, getDichroicModel, getDichroicSerialNumber, getDoubleAnnotationAnnotationCount, getDoubleAnnotationAnnotationRef, getDoubleAnnotationAnnotator, getDoubleAnnotationCount, getDoubleAnnotationDescription, getDoubleAnnotationID, getDoubleAnnotationNamespace, getDoubleAnnotationValue, getEllipseAnnotationRef, getEllipseFillColor, getEllipseFillRule, getEllipseFontFamily, getEllipseFontSize, getEllipseFontStyle, getEllipseID, getEllipseLocked, getEllipseRadiusX, getEllipseRadiusY, getEllipseStrokeColor, getEllipseStrokeDashArray, getEllipseStrokeWidth, getEllipseText, getEllipseTheC, getEllipseTheT, getEllipseTheZ, getEllipseTransform, getEllipseX, getEllipseY, getExperimentCount, getExperimentDescription, getExperimenterAnnotationRef, getExperimenterAnnotationRefCount, getExperimenterCount, getExperimenterEmail, getExperimenterFirstName, getExperimenterGroupAnnotationRef, getExperimenterGroupAnnotationRefCount, getExperimenterGroupCount, getExperimenterGroupDescription, getExperimenterGroupExperimenterRef, getExperimenterGroupExperimenterRefCount, getExperimenterGroupID, getExperimenterGroupLeader, getExperimenterGroupName, getExperimenterID, getExperimenterInstitution, getExperimenterLastName, getExperimenterMiddleName, getExperimenterUserName, getExperimentExperimenterRef, getExperimentID, getExperimentType, getFilamentAnnotationRef, getFilamentID, getFilamentLotNumber, getFilamentManufacturer, getFilamentModel, getFilamentPower, getFilamentSerialNumber, getFilamentType, getFileAnnotationAnnotationCount, getFileAnnotationAnnotationRef, getFileAnnotationAnnotator, getFileAnnotationCount, getFileAnnotationDescription, getFileAnnotationID, getFileAnnotationNamespace, getFilterAnnotationRef, getFilterAnnotationRefCount, getFilterCount, getFilterFilterWheel, getFilterID, getFilterLotNumber, getFilterManufacturer, getFilterModel, getFilterSerialNumber, getFilterSetCount, getFilterSetDichroicRef, getFilterSetEmissionFilterRef, getFilterSetEmissionFilterRefCount, getFilterSetExcitationFilterRef, getFilterSetExcitationFilterRefCount, getFilterSetID, getFilterSetLotNumber, getFilterSetManufacturer, getFilterSetModel, getFilterSetSerialNumber, getFilterType, getFolderAnnotationRef, getFolderAnnotationRefCount, getFolderCount, getFolderDescription, getFolderFolderRef, getFolderID, getFolderImageRef, getFolderImageRefCount, getFolderName, getFolderRefCount, getFolderROIRef, getFolderROIRefCount, getGenericExcitationSourceAnnotationRef, getGenericExcitationSourceID, getGenericExcitationSourceLotNumber, getGenericExcitationSourceManufacturer, getGenericExcitationSourceMap, getGenericExcitationSourceModel, getGenericExcitationSourcePower, getGenericExcitationSourceSerialNumber, getImageAcquisitionDate, getImageAnnotationRef, getImageAnnotationRefCount, getImageCount, getImageDescription, getImageExperimenterGroupRef, getImageExperimenterRef, getImageExperimentRef, getImageID, getImageInstrumentRef, getImageMicrobeamManipulationRef, getImageName, getImageROIRef, getImageROIRefCount, getImagingEnvironmentAirPressure, getImagingEnvironmentCO2Percent, getImagingEnvironmentHumidity, getImagingEnvironmentMap, getImagingEnvironmentTemperature, getInstrumentAnnotationRef, getInstrumentAnnotationRefCount, getInstrumentCount, getInstrumentID, getLabelAnnotationRef, getLabelFillColor, getLabelFillRule, getLabelFontFamily, getLabelFontSize, getLabelFontStyle, getLabelID, getLabelLocked, getLabelStrokeColor, getLabelStrokeDashArray, getLabelStrokeWidth, getLabelText, getLabelTheC, getLabelTheT, getLabelTheZ, getLabelTransform, getLabelX, getLabelY, getLaserAnnotationRef, getLaserFrequencyMultiplication, getLaserID, getLaserLaserMedium, getLaserLotNumber, getLaserManufacturer, getLaserModel, getLaserPockelCell, getLaserPower, getLaserPulse, getLaserPump, getLaserRepetitionRate, getLaserSerialNumber, getLaserTuneable, getLaserType, getLaserWavelength, getLeaderCount, getLightEmittingDiodeAnnotationRef, getLightEmittingDiodeID, getLightEmittingDiodeLotNumber, getLightEmittingDiodeManufacturer, getLightEmittingDiodeModel, getLightEmittingDiodePower, getLightEmittingDiodeSerialNumber, getLightPathAnnotationRef, getLightPathAnnotationRefCount, getLightPathDichroicRef, getLightPathEmissionFilterRef, getLightPathEmissionFilterRefCount, getLightPathExcitationFilterRef, getLightPathExcitationFilterRefCount, getLightSourceAnnotationRefCount, getLightSourceCount, getLightSourceType, getLineAnnotationRef, getLineFillColor, getLineFillRule, getLineFontFamily, getLineFontSize, getLineFontStyle, getLineID, getLineLocked, getLineMarkerEnd, getLineMarkerStart, getLineStrokeColor, getLineStrokeDashArray, getLineStrokeWidth, getLineText, getLineTheC, getLineTheT, getLineTheZ, getLineTransform, getLineX1, getLineX2, getLineY1, getLineY2, getListAnnotationAnnotationCount, getListAnnotationAnnotationRef, getListAnnotationAnnotator, getListAnnotationCount, getListAnnotationDescription, getListAnnotationID, getListAnnotationNamespace, getLongAnnotationAnnotationCount, getLongAnnotationAnnotationRef, getLongAnnotationAnnotator, getLongAnnotationCount, getLongAnnotationDescription, getLongAnnotationID, getLongAnnotationNamespace, getLongAnnotationValue, getMapAnnotationAnnotationCount, getMapAnnotationAnnotationRef, getMapAnnotationAnnotator, getMapAnnotationCount, getMapAnnotationDescription, getMapAnnotationID, getMapAnnotationNamespace, getMapAnnotationValue, getMaskAnnotationRef, getMaskBinData, getMaskBinDataBigEndian, getMaskBinDataCompression, getMaskBinDataLength, getMaskFillColor, getMaskFillRule, getMaskFontFamily, getMaskFontSize, getMaskFontStyle, getMaskHeight, getMaskID, getMaskLocked, getMaskStrokeColor, getMaskStrokeDashArray, getMaskStrokeWidth, getMaskText, getMaskTheC, getMaskTheT, getMaskTheZ, getMaskTransform, getMaskWidth, getMaskX, getMaskY, getMicrobeamManipulationCount, getMicrobeamManipulationDescription, getMicrobeamManipulationExperimenterRef, getMicrobeamManipulationID, getMicrobeamManipulationLightSourceSettingsAttenuation, getMicrobeamManipulationLightSourceSettingsCount, getMicrobeamManipulationLightSourceSettingsID, getMicrobeamManipulationLightSourceSettingsWavelength, getMicrobeamManipulationRefCount, getMicrobeamManipulationROIRef, getMicrobeamManipulationROIRefCount, getMicrobeamManipulationType, getMicroscopeLotNumber, getMicroscopeManufacturer, getMicroscopeModel, getMicroscopeSerialNumber, getMicroscopeType, getObjectiveAnnotationRef, getObjectiveAnnotationRefCount, getObjectiveCalibratedMagnification, getObjectiveCorrection, getObjectiveCount, getObjectiveID, getObjectiveImmersion, getObjectiveIris, getObjectiveLensNA, getObjectiveLotNumber, getObjectiveManufacturer, getObjectiveModel, getObjectiveNominalMagnification, getObjectiveSerialNumber, getObjectiveSettingsCorrectionCollar, getObjectiveSettingsID, getObjectiveSettingsMedium, getObjectiveSettingsRefractiveIndex, getObjectiveWorkingDistance, getPixelsBigEndian, getPixelsBinData, getPixelsBinDataBigEndian, getPixelsBinDataCompression, getPixelsBinDataCount, getPixelsBinDataLength, getPixelsDimensionOrder, getPixelsID, getPixelsInterleaved, getPixelsPhysicalSizeX, getPixelsPhysicalSizeY, getPixelsPhysicalSizeZ, getPixelsSignificantBits, getPixelsSizeC, getPixelsSizeT, getPixelsSizeX, getPixelsSizeY, getPixelsSizeZ, getPixelsTimeIncrement, getPixelsType, getPlaneAnnotationRef, getPlaneAnnotationRefCount, getPlaneCount, getPlaneDeltaT, getPlaneExposureTime, getPlaneHashSHA1, getPlanePositionX, getPlanePositionY, getPlanePositionZ, getPlaneTheC, getPlaneTheT, getPlaneTheZ, getPlateAcquisitionAnnotationRef, getPlateAcquisitionAnnotationRefCount, getPlateAcquisitionCount, getPlateAcquisitionDescription, getPlateAcquisitionEndTime, getPlateAcquisitionID, getPlateAcquisitionMaximumFieldCount, getPlateAcquisitionName, getPlateAcquisitionStartTime, getPlateAcquisitionWellSampleRef, getPlateAnnotationRef, getPlateAnnotationRefCount, getPlateColumnNamingConvention, getPlateColumns, getPlateCount, getPlateDescription, getPlateExternalIdentifier, getPlateFieldIndex, getPlateID, getPlateName, getPlateRefCount, getPlateRowNamingConvention, getPlateRows, getPlateStatus, getPlateWellOriginX, getPlateWellOriginY, getPointAnnotationRef, getPointFillColor, getPointFillRule, getPointFontFamily, getPointFontSize, getPointFontStyle, getPointID, getPointLocked, getPointStrokeColor, getPointStrokeDashArray, getPointStrokeWidth, getPointText, getPointTheC, getPointTheT, getPointTheZ, getPointTransform, getPointX, getPointY, getPolygonAnnotationRef, getPolygonFillColor, getPolygonFillRule, getPolygonFontFamily, getPolygonFontSize, getPolygonFontStyle, getPolygonID, getPolygonLocked, getPolygonPoints, getPolygonStrokeColor, getPolygonStrokeDashArray, getPolygonStrokeWidth, getPolygonText, getPolygonTheC, getPolygonTheT, getPolygonTheZ, getPolygonTransform, getPolylineAnnotationRef, getPolylineFillColor, getPolylineFillRule, getPolylineFontFamily, getPolylineFontSize, getPolylineFontStyle, getPolylineID, getPolylineLocked, getPolylineMarkerEnd, getPolylineMarkerStart, getPolylinePoints, getPolylineStrokeColor, getPolylineStrokeDashArray, getPolylineStrokeWidth, getPolylineText, getPolylineTheC, getPolylineTheT, getPolylineTheZ, getPolylineTransform, getProjectAnnotationRef, getProjectAnnotationRefCount, getProjectCount, getProjectDatasetRef, getProjectDescription, getProjectExperimenterGroupRef, getProjectExperimenterRef, getProjectID, getProjectName, getReagentAnnotationRef, getReagentAnnotationRefCount, getReagentCount, getReagentDescription, getReagentID, getReagentName, getReagentReagentIdentifier, getRectangleAnnotationRef, getRectangleFillColor, getRectangleFillRule, getRectangleFontFamily, getRectangleFontSize, getRectangleFontStyle, getRectangleHeight, getRectangleID, getRectangleLocked, getRectangleStrokeColor, getRectangleStrokeDashArray, getRectangleStrokeWidth, getRectangleText, getRectangleTheC, getRectangleTheT, getRectangleTheZ, getRectangleTransform, getRectangleWidth, getRectangleX, getRectangleY, getRightsRightsHeld, getRightsRightsHolder, getROIAnnotationRef, getROIAnnotationRefCount, getROICount, getROIDescription, getROIID, getROIName, getScreenAnnotationRef, getScreenAnnotationRefCount, getScreenCount, getScreenDescription, getScreenID, getScreenName, getScreenPlateRef, getScreenProtocolDescription, getScreenProtocolIdentifier, getScreenReagentSetDescription, getScreenReagentSetIdentifier, getScreenType, getShapeAnnotationRefCount, getShapeCount, getShapeType, getStageLabelName, getStageLabelX, getStageLabelY, getStageLabelZ, getTagAnnotationAnnotationCount, getTagAnnotationAnnotationRef, getTagAnnotationAnnotator, getTagAnnotationCount, getTagAnnotationDescription, getTagAnnotationID, getTagAnnotationNamespace, getTagAnnotationValue, getTermAnnotationAnnotationCount, getTermAnnotationAnnotationRef, getTermAnnotationAnnotator, getTermAnnotationCount, getTermAnnotationDescription, getTermAnnotationID, getTermAnnotationNamespace, getTermAnnotationValue, getTiffDataCount, getTiffDataFirstC, getTiffDataFirstT, getTiffDataFirstZ, getTiffDataIFD, getTiffDataPlaneCount, getTimestampAnnotationAnnotationCount, getTimestampAnnotationAnnotationRef, getTimestampAnnotationAnnotator, getTimestampAnnotationCount, getTimestampAnnotationDescription, getTimestampAnnotationID, getTimestampAnnotationNamespace, getTimestampAnnotationValue, getTransmittanceRangeCutIn, getTransmittanceRangeCutInTolerance, getTransmittanceRangeCutOut, getTransmittanceRangeCutOutTolerance, getTransmittanceRangeTransmittance, getUUID, getUUIDFileName, getUUIDValue, getWellAnnotationRef, getWellAnnotationRefCount, getWellColor, getWellColumn, getWellCount, getWellExternalDescription, getWellExternalIdentifier, getWellID, getWellReagentRef, getWellRow, getWellSampleCount, getWellSampleID, getWellSampleImageRef, getWellSampleIndex, getWellSamplePositionX, getWellSamplePositionY, getWellSampleRefCount, getWellSampleTimepoint, getWellType, getXMLAnnotationAnnotationCount, getXMLAnnotationAnnotationRef, getXMLAnnotationAnnotator, getXMLAnnotationCount, getXMLAnnotationDescription, getXMLAnnotationID, getXMLAnnotationNamespace, getXMLAnnotationValue