Index

C F G H I L M N P R S T V X
All Classes and Interfaces|All Packages|Constant Field Values

C

checkWarnings() - Method in class loci.formats.tools.ImageInfo

CommandLineTools - Class in loci.formats.tools

An utility class for various methods used in command-line tools

CommandLineTools() - Constructor for class loci.formats.tools.CommandLineTools

configureReaderPostInit() - Method in class loci.formats.tools.ImageInfo

configureReaderPreInit() - Method in class loci.formats.tools.ImageInfo

createReader() - Method in class loci.formats.tools.ImageInfo

F

fakeScreen(String[]) - Method in class loci.formats.tools.ImageFaker

G

GenerateCache - Class in loci.formats.tools

Generate cache file(s) for a specified file or directory.

GenerateCache() - Constructor for class loci.formats.tools.GenerateCache

getFooter(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getFormatLine(PrintFormatTable.PrintStyles, String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getHeader(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable

getHtmlFooter() - Static method in class loci.formats.tools.PrintFormatTable

getHtmlFormatLine(String, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getHtmlHeader() - Static method in class loci.formats.tools.PrintFormatTable

getTextFooter() - Static method in class loci.formats.tools.PrintFormatTable

getTextFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getTextHeader() - Static method in class loci.formats.tools.PrintFormatTable

getTileColumns(String) - Method in class loci.formats.tools.ImageConverter

Calculate the number of horizontal tiles represented by the given file name pattern.

getXmlFooter() - Static method in class loci.formats.tools.PrintFormatTable

getXmlFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable

getXmlHeader() - Static method in class loci.formats.tools.PrintFormatTable

H

HTML - Enum constant in enum loci.formats.tools.PrintFormatTable.PrintStyles

I

ImageConverter - Class in loci.formats.tools

ImageConverter is a utility class for converting a file between formats.

ImageConverter() - Constructor for class loci.formats.tools.ImageConverter

ImageFaker - Class in loci.formats.tools

ImageFaker is a wrapper class for invoking methods in FakeImage.

ImageFaker() - Constructor for class loci.formats.tools.ImageFaker

ImageInfo - Class in loci.formats.tools

ImageInfo is a utility class for reading a file and reporting information about it.

ImageInfo() - Constructor for class loci.formats.tools.ImageInfo

initPreMinMaxValues() - Method in class loci.formats.tools.ImageInfo

L

loci.formats.tools - package loci.formats.tools

M

main(String[]) - Static method in class loci.formats.tools.GenerateCache

main(String[]) - Static method in class loci.formats.tools.ImageConverter

main(String[]) - Static method in class loci.formats.tools.ImageFaker

main(String[]) - Static method in class loci.formats.tools.ImageInfo

main(String[]) - Static method in class loci.formats.tools.PrintDomains

main(String[]) - Static method in class loci.formats.tools.PrintFormatTable

main(String[]) - Static method in class loci.formats.tools.TiffComment

main(String[]) - Static method in class loci.formats.tools.XMLIndent

main(String[]) - Static method in class loci.formats.tools.XMLValidate

mapLocation() - Method in class loci.formats.tools.ImageInfo

N

NO_UPGRADE_CHECK - Static variable in class loci.formats.tools.CommandLineTools

P

parseArgs(String[]) - Method in class loci.formats.tools.ImageFaker

parseArgs(String[]) - Method in class loci.formats.tools.ImageInfo

PrintDomains - Class in loci.formats.tools

Utility class for printing a list of scientific domains supported by Bio-Formats, and all of the supported formats in each domain.

PrintDomains() - Constructor for class loci.formats.tools.PrintDomains

PrintFormatTable - Class in loci.formats.tools

Utility class for printing a list of formats supported by Bio-Formats.

PrintFormatTable() - Constructor for class loci.formats.tools.PrintFormatTable

PrintFormatTable.PrintStyles - Enum in loci.formats.tools

printGlobalMetadata() - Method in class loci.formats.tools.ImageInfo

printMinMaxValues() - Method in class loci.formats.tools.ImageInfo

printOMEXML() - Method in class loci.formats.tools.ImageInfo

printOriginalMetadata() - Method in class loci.formats.tools.ImageInfo

printSupportedFormats(String[]) - Static method in class loci.formats.tools.PrintFormatTable

printUsage() - Method in class loci.formats.tools.ImageFaker

printUsage() - Method in class loci.formats.tools.ImageInfo

printVersion() - Static method in class loci.formats.tools.CommandLineTools

process(BufferedReader, boolean) - Static method in class loci.formats.tools.XMLIndent

process(String, BufferedReader) - Static method in class loci.formats.tools.XMLValidate

Deprecated.

R

readCoreMetadata() - Method in class loci.formats.tools.ImageInfo

readPixels() - Method in class loci.formats.tools.ImageInfo

runUpgradeCheck(String[]) - Static method in class loci.formats.tools.CommandLineTools

S

setReader(IFormatReader) - Method in class loci.formats.tools.ImageInfo

T

testConvert(IFormatWriter, String[]) - Method in class loci.formats.tools.ImageConverter

A utility method for converting a file from the command line.

testRead(String[]) - Method in class loci.formats.tools.ImageInfo

A utility method for reading a file from the command line, and displaying the results in a simple display.

TiffComment - Class in loci.formats.tools

Extracts the comment from the first IFD of the given TIFF file(s).

TiffComment() - Constructor for class loci.formats.tools.TiffComment

TXT - Enum constant in enum loci.formats.tools.PrintFormatTable.PrintStyles

V

validate(BufferedReader, String) - Static method in class loci.formats.tools.XMLValidate

validate(String) - Static method in class loci.formats.tools.XMLValidate

validate(String[]) - Static method in class loci.formats.tools.XMLValidate

valueOf(String) - Static method in enum loci.formats.tools.PrintFormatTable.PrintStyles

Returns the enum constant of this type with the specified name.

values() - Static method in enum loci.formats.tools.PrintFormatTable.PrintStyles

Returns an array containing the constants of this enum type, in the order they are declared.

VERSION - Static variable in class loci.formats.tools.CommandLineTools

X

XML - Enum constant in enum loci.formats.tools.PrintFormatTable.PrintStyles

XMLIndent - Class in loci.formats.tools

Indents XML to be more readable.

XMLIndent() - Constructor for class loci.formats.tools.XMLIndent

XMLValidate - Class in loci.formats.tools

Attempts to validate the given XML files.

XMLValidate() - Constructor for class loci.formats.tools.XMLValidate

C F G H I L M N P R S T V X
All Classes and Interfaces|All Packages|Constant Field Values