Package net.preibisch.mvrecon.process.fusion.transformed

Class TransformView

java.lang.Object

net.preibisch.mvrecon.process.fusion.transformed.TransformView

public class TransformView
extends Object

Constructor Summary

Constructors

Constructor	Description
TransformView()

Method Summary

Modifier and Type	Method	Description
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	transformView(mpicbg.spim.data.sequence.ImgLoader imgloader, mpicbg.spim.data.sequence.ViewId viewId, net.imglib2.realtransform.AffineTransform3D transform, net.imglib2.FinalInterval boundingBox, net.imglib2.outofbounds.OutOfBoundsFactory<T,net.imglib2.RandomAccessible<T>> outOfBoundsFactory, net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory)
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	transformView(mpicbg.spim.data.sequence.ImgLoader imgloader, mpicbg.spim.data.sequence.ViewId viewId, net.imglib2.realtransform.AffineTransform3D transform, net.imglib2.Interval boundingBox, float outsideValue, int interpolation)
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	transformView(mpicbg.spim.data.SpimData data, mpicbg.spim.data.sequence.ViewId viewId, net.imglib2.FinalInterval boundingBox, net.imglib2.outofbounds.OutOfBoundsFactory<T,net.imglib2.RandomAccessible<T>> outOfBoundsFactory, net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory)
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	transformView(mpicbg.spim.data.SpimData data, mpicbg.spim.data.sequence.ViewId viewId, net.imglib2.Interval boundingBox, float outsideValue, int interpolation)
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	transformView(net.imglib2.RandomAccessibleInterval<T> input, net.imglib2.realtransform.AffineTransform3D transform, net.imglib2.Interval boundingBox, float minValue, float outsideValue, int interpolation)	Creates a virtual construct that transforms and zero-mins.
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	transformView(net.imglib2.RandomAccessibleInterval<T> input, net.imglib2.realtransform.AffineTransform3D transform, net.imglib2.Interval boundingBox, float outsideValue, int interpolation)	Creates a virtual construct that transforms and zero-mins.
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	transformView(net.imglib2.RandomAccessibleInterval<T> input, net.imglib2.realtransform.AffineTransform3D transform, net.imglib2.Interval boundingBox, net.imglib2.outofbounds.OutOfBoundsFactory<T,net.imglib2.RandomAccessible<T>> outOfBoundsFactory, net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory)	Creates a virtual construct that transforms and zero-mins using a user-defined outofbounds & interpolation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TransformView

public TransformView()

Method Details

transformView

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> transformView(net.imglib2.RandomAccessibleInterval<T> input,
 net.imglib2.realtransform.AffineTransform3D transform,
 net.imglib2.Interval boundingBox,
 float minValue,
 float outsideValue,
 int interpolation)

Creates a virtual construct that transforms and zero-mins. Note: we do not use a general outofbounds strategy so that when using linear interpolation there are no half-correct pixels at the interface between image/background and so that we can clearly know which parts are from image data and where there is no data

Type Parameters:

T - - type

Parameters:

input - - the input image

transform - - the affine transformation

boundingBox - - the bounding box (after transformation)

minValue - - the minimal value inside the image

outsideValue - - the value that is returned if it does not intersect with the input image

interpolation - - 0=nearest neighbor, 1=linear interpolation

Returns:

transformed image

transformView

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> transformView(net.imglib2.RandomAccessibleInterval<T> input,
 net.imglib2.realtransform.AffineTransform3D transform,
 net.imglib2.Interval boundingBox,
 float outsideValue,
 int interpolation)

Creates a virtual construct that transforms and zero-mins. Note: we do not use a general outofbounds strategy so that when using linear interpolation there are no half-correct pixels at the interface between image/background and so that we can clearly know which parts are from image data and where there is no data

Type Parameters:

T - type

Parameters:

input - - the input image

transform - - the affine transformation

boundingBox - - the bounding box (after transformation)

outsideValue - - the value that is returned if it does not intersect with the input image

interpolation - - 0=nearest neighbor, 1=linear interpolation

Returns:

transformed image

transformView

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> transformView(mpicbg.spim.data.sequence.ImgLoader imgloader,
 mpicbg.spim.data.sequence.ViewId viewId,
 net.imglib2.realtransform.AffineTransform3D transform,
 net.imglib2.Interval boundingBox,
 float outsideValue,
 int interpolation)

transformView

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> transformView(mpicbg.spim.data.sequence.ImgLoader imgloader,
 mpicbg.spim.data.sequence.ViewId viewId,
 net.imglib2.realtransform.AffineTransform3D transform,
 net.imglib2.FinalInterval boundingBox,
 net.imglib2.outofbounds.OutOfBoundsFactory<T,net.imglib2.RandomAccessible<T>> outOfBoundsFactory,
 net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory)

transformView

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> transformView(mpicbg.spim.data.SpimData data,
 mpicbg.spim.data.sequence.ViewId viewId,
 net.imglib2.Interval boundingBox,
 float outsideValue,
 int interpolation)

transformView

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> transformView(net.imglib2.RandomAccessibleInterval<T> input,
 net.imglib2.realtransform.AffineTransform3D transform,
 net.imglib2.Interval boundingBox,
 net.imglib2.outofbounds.OutOfBoundsFactory<T,net.imglib2.RandomAccessible<T>> outOfBoundsFactory,
 net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory)

Creates a virtual construct that transforms and zero-mins using a user-defined outofbounds & interpolation.

Type Parameters:

T - type

Parameters:

input - - the input image

transform - - the affine transformation

boundingBox - - the bounding box (after transformation)

outOfBoundsFactory - - outofboundsfactory

interpolatorFactory - - any interpolatorfactory

Returns:

transformed image

transformView

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> transformView(mpicbg.spim.data.SpimData data,
 mpicbg.spim.data.sequence.ViewId viewId,
 net.imglib2.FinalInterval boundingBox,
 net.imglib2.outofbounds.OutOfBoundsFactory<T,net.imglib2.RandomAccessible<T>> outOfBoundsFactory,
 net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory)