Package net.preibisch.mvrecon.process.fusion.blk

Class BlkAffineFusion

java.lang.Object

net.preibisch.mvrecon.process.fusion.blk.BlkAffineFusion

public class BlkAffineFusion
extends Object

Constructor Summary

Constructors

Constructor	Description
BlkAffineFusion()

Method Summary

Modifier and Type	Method	Description
protected static <T extends net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	convertToOutputType(net.imglib2.algorithm.blocks.BlockSupplier<net.imglib2.type.numeric.real.FloatType> floatBlocks, net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, T type)
protected static <T extends net.imglib2.type.NativeType<T>> net.imglib2.RandomAccessible<T>	extendInput(net.imglib2.RandomAccessible<T> input)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds, Map<mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.realtransform.AffineTransform3D> viewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions, FusionGUI.FusionType fusionType, double anisotropyFactor, int interpolationMethod, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments, net.imglib2.Interval fusionInterval, T type, int[] blockSize)	TODO javadoc
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	initWithIntensityCoefficients(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds, Map<mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.realtransform.AffineTransform3D> viewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions, FusionGUI.FusionType fusionType, double anisotropyFactor, Map<Integer,Integer> fusionMap, int interpolationMethod, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustments, net.imglib2.Interval fusionInterval, T type, int[] blockSize)
static boolean	is2d(Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BlkAffineFusion

public BlkAffineFusion()

Method Details

init

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
net.imglib2.algorithm.blocks.BlockSupplier<T> init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter,
 mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds,
 Map<mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.realtransform.AffineTransform3D> viewRegistrations,
 Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions,
 FusionGUI.FusionType fusionType,
 double anisotropyFactor,
 int interpolationMethod,
 Map<mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments,
 net.imglib2.Interval fusionInterval,
 T type,
 int[] blockSize)

TODO javadoc

Type Parameters:

T - output type

Parameters:

converter - converts from FloatType to the output type. Maybe null, in which case a default converter (clamp to output type range) is used.

imgloader - the imgloader to fetch raw data

viewIds - which viewids to fuse

viewRegistrations - the registrations (must include anisotropy and downsampling if desired)

viewDescriptions - TODO

fusionType - how to combine pixels

anisotropyFactor -

interpolationMethod - 1==linear, 0==nearest neighbor

intensityAdjustments - intensity adjustments, can be null

fusionInterval - TODO

type - instance of the output type

blockSize - TODO

Returns:

initWithIntensityCoefficients

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
net.imglib2.algorithm.blocks.BlockSupplier<T> initWithIntensityCoefficients(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter,
 mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds,
 Map<mpicbg.spim.data.sequence.ViewId,? extends net.imglib2.realtransform.AffineTransform3D> viewRegistrations,
 Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions,
 FusionGUI.FusionType fusionType,
 double anisotropyFactor,
 Map<Integer,Integer> fusionMap,
 int interpolationMethod,
 Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustments,
 net.imglib2.Interval fusionInterval,
 T type,
 int[] blockSize)

convertToOutputType

protected static <T extends net.imglib2.type.NativeType<T>>
net.imglib2.algorithm.blocks.BlockSupplier<T> convertToOutputType(net.imglib2.algorithm.blocks.BlockSupplier<net.imglib2.type.numeric.real.FloatType> floatBlocks,
 net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter,
 T type)

extendInput

protected static <T extends net.imglib2.type.NativeType<T>>
net.imglib2.RandomAccessible<T> extendInput(net.imglib2.RandomAccessible<T> input)

is2d

public static boolean is2d(Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds,
 Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions)