Package net.preibisch.mvrecon.fiji.spimdata.imgloaders.filemap2

Class FileMapImgLoaderLOCI2

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.imgloaders.filemap2.FileMapImgLoaderLOCI2

All Implemented Interfaces:

mpicbg.spim.data.generic.sequence.BasicImgLoader, mpicbg.spim.data.sequence.ImgLoader, FileMapGettable

public class FileMapImgLoaderLOCI2
extends Object
implements mpicbg.spim.data.sequence.ImgLoader, FileMapGettable

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	FileMapImgLoaderLOCI2.FileMapSetupImgLoaderLOCI2<T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>

Constructor Summary

Constructors

Constructor	Description
FileMapImgLoaderLOCI2(Map<? extends mpicbg.spim.data.sequence.ViewId,FileMapEntry> fileMap, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription)
FileMapImgLoaderLOCI2(Map<? extends mpicbg.spim.data.sequence.ViewId,FileMapEntry> fileMap, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription, boolean zGrouped)

Method Summary

Modifier and Type	Method	Description
static <T extends net.imglib2.type.numeric.RealType<T>, S extends net.imglib2.type.numeric.RealType<S>> void	copy(net.imglib2.RandomAccessible<T> src, net.imglib2.RandomAccessibleInterval<S> dest)	Deprecated. Use RealTypeConverters.copyFromTo(RandomAccessible, RandomAccessibleInterval).
Map<mpicbg.spim.data.sequence.ViewId,FileMapEntry>	getFileMap()
mpicbg.spim.data.sequence.SetupImgLoader<?>	getSetupImgLoader(int setupId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FileMapImgLoaderLOCI2

public FileMapImgLoaderLOCI2(Map<? extends mpicbg.spim.data.sequence.ViewId,FileMapEntry> fileMap,
 mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription)

FileMapImgLoaderLOCI2

public FileMapImgLoaderLOCI2(Map<? extends mpicbg.spim.data.sequence.ViewId,FileMapEntry> fileMap,
 mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription,
 boolean zGrouped)

Method Details

getSetupImgLoader

public mpicbg.spim.data.sequence.SetupImgLoader<?> getSetupImgLoader(int setupId)

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.generic.sequence.BasicImgLoader

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.sequence.ImgLoader

getFileMap

public Map<mpicbg.spim.data.sequence.ViewId,FileMapEntry> getFileMap()

Specified by:

getFileMap in interface FileMapGettable

copy

@Deprecated
public static <T extends net.imglib2.type.numeric.RealType<T>,
S extends net.imglib2.type.numeric.RealType<S>>
void copy(net.imglib2.RandomAccessible<T> src,
 net.imglib2.RandomAccessibleInterval<S> dest)

Deprecated.

Use RealTypeConverters.copyFromTo(RandomAccessible, RandomAccessibleInterval).

copy src to dest

Type Parameters:

T - pixel type source

S - pixel type destination

Parameters:

src - source, will not be modified

dest - destiantion, will be modified