Package net.preibisch.mvrecon.fiji.spimdata.imgloaders

Class SimViewSetupImgLoader

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.imgloaders.SimViewSetupImgLoader

All Implemented Interfaces:

mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>, mpicbg.spim.data.sequence.SetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

public class SimViewSetupImgLoader
extends Object
implements mpicbg.spim.data.sequence.SetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

Field Summary

Fields

Modifier and Type	Field	Description
static boolean	virtual

Constructor Summary

Constructors

Constructor	Description
SimViewSetupImgLoader(int setupId, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription, File expDir, String filePattern, SimViewMetaData.Pattern patternParser, int type, boolean littleEndian)

Method Summary

Modifier and Type	Method	Description
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<T>	fixSizeIfNecessary(net.imglib2.RandomAccessibleInterval<T> img, net.imglib2.Dimensions dim, mpicbg.spim.data.sequence.ViewId viewId)
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getFloatImage(int timepointId, boolean normalize, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType>	getImage(int timepointId, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
net.imglib2.Dimensions	getImageSize(int timepointId)
net.imglib2.type.numeric.integer.UnsignedShortType	getImageType()
mpicbg.spim.data.sequence.VoxelDimensions	getVoxelSize(int timepointId)
static String	printDimensions(net.imglib2.Dimensions dim)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

virtual

public static boolean virtual

Constructor Details

SimViewSetupImgLoader

public SimViewSetupImgLoader(int setupId,
 mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription,
 File expDir,
 String filePattern,
 SimViewMetaData.Pattern patternParser,
 int type,
 boolean littleEndian)

Method Details

getFloatImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getFloatImage(int timepointId,
 boolean normalize,
 mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getFloatImage in interface mpicbg.spim.data.sequence.SetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

getImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType> getImage(int timepointId,
 mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getImage in interface mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

fixSizeIfNecessary

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<T> fixSizeIfNecessary(net.imglib2.RandomAccessibleInterval<T> img,
 net.imglib2.Dimensions dim,
 mpicbg.spim.data.sequence.ViewId viewId)

printDimensions

public static String printDimensions(net.imglib2.Dimensions dim)

getImageType

public net.imglib2.type.numeric.integer.UnsignedShortType getImageType()

Specified by:

getImageType in interface mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

getImageSize

public net.imglib2.Dimensions getImageSize(int timepointId)

Specified by:

getImageSize in interface mpicbg.spim.data.sequence.SetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>

getVoxelSize

public mpicbg.spim.data.sequence.VoxelDimensions getVoxelSize(int timepointId)

Specified by:

getVoxelSize in interface mpicbg.spim.data.sequence.SetupImgLoader<net.imglib2.type.numeric.integer.UnsignedShortType>