Package net.preibisch.mvrecon.fiji.spimdata.imgloaders

Class AllenOMEZarrLoader

java.lang.Object

bdv.img.n5.N5ImageLoader

net.preibisch.mvrecon.fiji.spimdata.imgloaders.AllenOMEZarrLoader

All Implemented Interfaces:

bdv.ViewerImgLoader, mpicbg.spim.data.generic.sequence.BasicImgLoader, mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader, mpicbg.spim.data.sequence.ImgLoader, mpicbg.spim.data.sequence.MultiResolutionImgLoader

public class AllenOMEZarrLoader
extends bdv.img.n5.N5ImageLoader

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	AllenOMEZarrLoader.OMEZARREntry

Nested classes/interfaces inherited from class bdv.img.n5.N5ImageLoader

bdv.img.n5.N5ImageLoader.SetupImgLoader<T extends net.imglib2.type.NativeType<T>,V extends net.imglib2.Volatile<T> & net.imglib2.type.NativeType<V>>

Constructor Summary

Constructors

Constructor	Description
AllenOMEZarrLoader(URI n5URI, org.janelia.saalfeldlab.n5.universe.StorageFormat format, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription, Map<mpicbg.spim.data.sequence.ViewId,AllenOMEZarrLoader.OMEZARREntry> viewIdToPath)

Method Summary

Modifier and Type	Method	Description
protected bdv.img.n5.N5Properties	createN5PropertiesInstance()
org.janelia.saalfeldlab.n5.universe.StorageFormat	getFormat()
Map<mpicbg.spim.data.sequence.ViewId,AllenOMEZarrLoader.OMEZARREntry>	getViewIdToPath()
static void	main(String[] args)
protected <T extends net.imglib2.type.NativeType<T>> net.imglib2.RandomAccessibleInterval<T>	prepareCachedImage(String datasetPath, int setupId, int timepointId, int level, net.imglib2.cache.volatiles.CacheHints cacheHints, T type)

Methods inherited from class bdv.img.n5.N5ImageLoader

close, createCacheArrayLoader, getCacheControl, getN5File, getN5URI, getSetupImgLoader, instantiateN5Reader, prefetch, setCreatedSharedQueue, setNumFetcherThreads

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AllenOMEZarrLoader

public AllenOMEZarrLoader(URI n5URI,
 org.janelia.saalfeldlab.n5.universe.StorageFormat format,
 mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription,
 Map<mpicbg.spim.data.sequence.ViewId,AllenOMEZarrLoader.OMEZARREntry> viewIdToPath)

Method Details

getViewIdToPath

public Map<mpicbg.spim.data.sequence.ViewId,AllenOMEZarrLoader.OMEZARREntry> getViewIdToPath()

createN5PropertiesInstance

protected bdv.img.n5.N5Properties createN5PropertiesInstance()

Overrides:

createN5PropertiesInstance in class bdv.img.n5.N5ImageLoader

getFormat

public org.janelia.saalfeldlab.n5.universe.StorageFormat getFormat()

prepareCachedImage

protected <T extends net.imglib2.type.NativeType<T>>
net.imglib2.RandomAccessibleInterval<T> prepareCachedImage(String datasetPath,
 int setupId,
 int timepointId,
 int level,
 net.imglib2.cache.volatiles.CacheHints cacheHints,
 T type)

Overrides:

prepareCachedImage in class bdv.img.n5.N5ImageLoader

main

public static void main(String[] args)
                 throws mpicbg.spim.data.SpimDataException

Throws:

mpicbg.spim.data.SpimDataException