Package net.preibisch.mvrecon.fiji.plugin.resave

Class Generic_Resave_HDF5

java.lang.Object

net.preibisch.mvrecon.fiji.plugin.resave.Generic_Resave_HDF5

All Implemented Interfaces:

ij.plugin.PlugIn

public class Generic_Resave_HDF5
extends Object
implements ij.plugin.PlugIn

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	Generic_Resave_HDF5.LoopBack2d
static class	Generic_Resave_HDF5.ParametersResaveHDF5

Field Summary

Fields

Modifier and Type	Field	Description
static final String[]	convertChoices
static int	defaultConvertChoice
static double	defaultMax
static double	defaultMin
static String	lastExportPath

Constructor Summary

Constructors

Constructor	Description
Generic_Resave_HDF5()

Method Summary

Modifier and Type	Method	Description
static File	getInputXML()
static Generic_Resave_HDF5.ParametersResaveHDF5	getParameters(bdv.export.ExportMipmapInfo autoMipmapSettings, boolean askForXMLPath, boolean is16bit)
static Generic_Resave_HDF5.ParametersResaveHDF5	getParameters(bdv.export.ExportMipmapInfo autoMipmapSettings, boolean askForXMLPath, String dialogTitle, boolean is16bit)
static ArrayList<bdv.img.hdf5.Partition>	getPartitions(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, Generic_Resave_HDF5.ParametersResaveHDF5 params)
static Map<Integer,bdv.export.ExportMipmapInfo>	getPerSetupExportMipmapInfo(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, Generic_Resave_HDF5.ParametersResaveHDF5 params)
static void	main(String[] args)
void	run(String arg)
static void	writeHDF5(mpicbg.spim.data.generic.AbstractSpimData<?> spimData, Generic_Resave_HDF5.ParametersResaveHDF5 params, bdv.export.ProgressWriter progressWriter)
static <T extends mpicbg.spim.data.generic.AbstractSpimData<A>, A extends mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?, ?, ? super mpicbg.spim.data.sequence.ImgLoader>> void	writeXML(T spimData, mpicbg.spim.data.generic.XmlIoAbstractSpimData<A,T> io, Generic_Resave_HDF5.ParametersResaveHDF5 params, bdv.export.ProgressWriter progressWriter)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

convertChoices

public static final String[] convertChoices

defaultConvertChoice

public static int defaultConvertChoice

defaultMin

public static double defaultMin

defaultMax

public static double defaultMax

lastExportPath

public static String lastExportPath

Constructor Details

Generic_Resave_HDF5

public Generic_Resave_HDF5()

Method Details

main

public static void main(String[] args)

run

public void run(String arg)

Specified by:

run in interface ij.plugin.PlugIn

getPerSetupExportMipmapInfo

public static Map<Integer,bdv.export.ExportMipmapInfo> getPerSetupExportMipmapInfo(mpicbg.spim.data.generic.AbstractSpimData<?> spimData,
 Generic_Resave_HDF5.ParametersResaveHDF5 params)

getPartitions

public static ArrayList<bdv.img.hdf5.Partition> getPartitions(mpicbg.spim.data.generic.AbstractSpimData<?> spimData,
 Generic_Resave_HDF5.ParametersResaveHDF5 params)

writeHDF5

public static void writeHDF5(mpicbg.spim.data.generic.AbstractSpimData<?> spimData,
 Generic_Resave_HDF5.ParametersResaveHDF5 params,
 bdv.export.ProgressWriter progressWriter)

writeXML

public static <T extends mpicbg.spim.data.generic.AbstractSpimData<A>,
A extends mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,
?,
? super mpicbg.spim.data.sequence.ImgLoader>>
void writeXML(T spimData,
 mpicbg.spim.data.generic.XmlIoAbstractSpimData<A,T> io,
 Generic_Resave_HDF5.ParametersResaveHDF5 params,
 bdv.export.ProgressWriter progressWriter)
       throws mpicbg.spim.data.SpimDataException

Throws:

mpicbg.spim.data.SpimDataException

getInputXML

public static File getInputXML()

getParameters

public static Generic_Resave_HDF5.ParametersResaveHDF5 getParameters(bdv.export.ExportMipmapInfo autoMipmapSettings,
 boolean askForXMLPath,
 boolean is16bit)

getParameters

public static Generic_Resave_HDF5.ParametersResaveHDF5 getParameters(bdv.export.ExportMipmapInfo autoMipmapSettings,
 boolean askForXMLPath,
 String dialogTitle,
 boolean is16bit)