Package net.preibisch.mvrecon.fiji.plugin.queryXML

Class LoadParseQueryXML

java.lang.Object

net.preibisch.mvrecon.fiji.plugin.queryXML.GenericLoadParseQueryXML<SpimData2,mpicbg.spim.data.sequence.SequenceDescription,mpicbg.spim.data.sequence.ViewSetup,mpicbg.spim.data.sequence.ViewDescription,mpicbg.spim.data.sequence.ImgLoader,XmlIoSpimData2>

net.preibisch.mvrecon.fiji.plugin.queryXML.LoadParseQueryXML

public class LoadParseQueryXML
extends GenericLoadParseQueryXML<SpimData2,mpicbg.spim.data.sequence.SequenceDescription,mpicbg.spim.data.sequence.ViewSetup,mpicbg.spim.data.sequence.ViewDescription,mpicbg.spim.data.sequence.ImgLoader,XmlIoSpimData2>

Field Summary

Fields inherited from class net.preibisch.mvrecon.fiji.plugin.queryXML.GenericLoadParseQueryXML

allAttributeInstances, attributeChoice, attributeChoiceList, attributeInstancesToProcess, attributes, buttonText, checkBoxResult, checkBoxText, color, comparator, data, defaultAttributeChoice, defaultAttributeEntityIndex, defaultAttributePatternString, defaultAttributeSelectedEntities, defaultXMLURI, defineNewDataset, errorMsg1, gd, goodMsg1, io, listener, message1, message2, neutralMsg1a, neutralMsg1b, noMsg2, timepointsToProcess, warningMsg1, xmlFileName

Constructor Summary

Constructors

Constructor	Description
LoadParseQueryXML()

Method Summary

Modifier and Type	Method	Description
List<mpicbg.spim.data.sequence.Angle>	getAnglesToProcess()
List<mpicbg.spim.data.sequence.Channel>	getChannelsToProcess()
List<mpicbg.spim.data.sequence.Illumination>	getIlluminationsToProcess()
List<mpicbg.spim.data.sequence.Tile>	getTilesToProcess()
static void	main(String[] args)
protected SpimData2	parseXML(URI xmlPath)
boolean	queryXML(boolean askForAngles, boolean askForChannels, boolean askForIllum, boolean askForTiles, boolean askForTimepoints)
boolean	queryXML(String additionalTitle, boolean askForAngles, boolean askForChannels, boolean askForIllum, boolean askForTiles, boolean askForTimepoints)
boolean	queryXML(String additionalTitle, String query, boolean askForAngles, boolean askForChannels, boolean askForIllum, boolean askForTiles, boolean askForTimepoints)	Asks the user for a valid XML (real time parsing)
boolean	queryXML(String additionalTitle, String query, List<String> specifyAttributes)

Methods inherited from class net.preibisch.mvrecon.fiji.plugin.queryXML.GenericLoadParseQueryXML

addButton, addCheckbox, addListeners, buildEntityList, buildTimepointList, entitiesPerAttribute, getAttributes, getComparator, getData, getGenericDialog, getIO, getSpimDataDescription, getTimePointsToProcess, getViewSetupsToProcess, getXMLFileName, getXMLURI, isCheckBoxSelected, makeChoiceList, populateAttributesEntities, query, queryDetails, queryIndividualEntry, queryMultipleEntries, queryPattern, queryXML, queryXML, queryXML, queryXML, setComparator, tryParsing

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LoadParseQueryXML

public LoadParseQueryXML()

Method Details

queryXML

public boolean queryXML(String additionalTitle,
 boolean askForAngles,
 boolean askForChannels,
 boolean askForIllum,
 boolean askForTiles,
 boolean askForTimepoints)

queryXML

public boolean queryXML(boolean askForAngles,
 boolean askForChannels,
 boolean askForIllum,
 boolean askForTiles,
 boolean askForTimepoints)

queryXML

public boolean queryXML(String additionalTitle,
 String query,
 boolean askForAngles,
 boolean askForChannels,
 boolean askForIllum,
 boolean askForTiles,
 boolean askForTimepoints)

Asks the user for a valid XML (real time parsing)

Parameters:

additionalTitle - - additional tile

query - - the query

askForAngles - - ask the user if he/she wants to select a subset of angles, otherwise all angles are selected

askForChannels - - ask the user if he/she wants to select a subset of channels, otherwise all channels are selected

askForIllum - - ask the user if he/she wants to select a subset of illuminations, otherwise all illuminations are selected

askForTiles - - ask the user if he/she wants to select a subset of tiles, otherwise all tiles are selected

askForTimepoints - - ask the user if he/she wants to select a subset of timepoints, otherwise all timepoints are selected

Returns:

null if cancelled or timepointlistsize = 0

queryXML

public boolean queryXML(String additionalTitle,
 String query,
 List<String> specifyAttributes)

Overrides:

queryXML in class GenericLoadParseQueryXML<SpimData2,mpicbg.spim.data.sequence.SequenceDescription,mpicbg.spim.data.sequence.ViewSetup,mpicbg.spim.data.sequence.ViewDescription,mpicbg.spim.data.sequence.ImgLoader,XmlIoSpimData2>

getAnglesToProcess

public List<mpicbg.spim.data.sequence.Angle> getAnglesToProcess()

Returns:

All angles that should be processed

getChannelsToProcess

public List<mpicbg.spim.data.sequence.Channel> getChannelsToProcess()

Returns:

All channels that should be processed

getIlluminationsToProcess

public List<mpicbg.spim.data.sequence.Illumination> getIlluminationsToProcess()

Returns:

All illumination directions that should be processed

getTilesToProcess

public List<mpicbg.spim.data.sequence.Tile> getTilesToProcess()

Returns:

All tiles directions that should be processed

parseXML

protected SpimData2 parseXML(URI xmlPath)
                      throws mpicbg.spim.data.SpimDataException

Specified by:

parseXML in class GenericLoadParseQueryXML<SpimData2,mpicbg.spim.data.sequence.SequenceDescription,mpicbg.spim.data.sequence.ViewSetup,mpicbg.spim.data.sequence.ViewDescription,mpicbg.spim.data.sequence.ImgLoader,XmlIoSpimData2>

Throws:

mpicbg.spim.data.SpimDataException

main

public static void main(String[] args)