Package net.preibisch.mvrecon.fiji.plugin.interactive

Class MultiResolutionTools

java.lang.Object

net.preibisch.mvrecon.fiji.plugin.interactive.MultiResolutionTools

public class MultiResolutionTools
extends Object

Constructor Summary

Constructors

Constructor	Description
MultiResolutionTools()

Method Summary

Modifier and Type	Method	Description
static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>>	createMultiResolutionAffine(mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader, Map<mpicbg.spim.data.sequence.ViewId,net.imglib2.realtransform.AffineTransform3D> registrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions, Collection<? extends mpicbg.spim.data.sequence.ViewId> views, FusionGUI.FusionType fusionType, int interpolation, net.imglib2.Interval boundingBox, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments, int minDS, int maxDS, int dsInc)
static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>>	createMultiResolutionAffine(SpimData2 spimData, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds, net.imglib2.Interval boundingBox, int minDS, int maxDS, int dsInc)
static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>>	createMultiResolutionNonRigid(mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader, Map<mpicbg.spim.data.sequence.ViewId,net.imglib2.realtransform.AffineTransform3D> viewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,ViewInterestPointLists> viewInterestPoints, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToFuse, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToUse, ArrayList<String> labels, FusionGUI.FusionType fusionType, boolean displayDistances, long controlPointDistance, double alpha, int interpolation, net.imglib2.Interval boundingBox, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments, ExecutorService service, int minDS, int maxDS, int dsInc)
static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>>	createMultiResolutionNonRigid(SpimData2 spimData, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToFuse, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToUse, ArrayList<String> labels, long controlPointDistance, net.imglib2.Interval boundingBox, ExecutorService service, int minDS, int maxDS, int dsInc)
static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>>	createMultiResolutionNonRigid(SpimData2 spimData, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToFuse, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToUse, ArrayList<String> labels, FusionGUI.FusionType fusionType, boolean displayDistances, long controlPointDistance, double alpha, int interpolation, net.imglib2.Interval boundingBox, Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments, ExecutorService service, int minDS, int maxDS, int dsInc)
static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.volatiles.VolatileFloatType>,net.imglib2.realtransform.AffineTransform3D>>	createVolatileRAIs(List<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> multiRes)
static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.volatiles.VolatileFloatType>,net.imglib2.realtransform.AffineTransform3D>>	createVolatileRAIs(List<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> multiRes, long maxCacheSize, int[] cellDim)
static void	updateBDV(bdv.util.Bdv bdv)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MultiResolutionTools

public MultiResolutionTools()

Method Details

updateBDV

public static void updateBDV(bdv.util.Bdv bdv)

createMultiResolutionNonRigid

public static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> createMultiResolutionNonRigid(SpimData2 spimData,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToFuse,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToUse,
 ArrayList<String> labels,
 long controlPointDistance,
 net.imglib2.Interval boundingBox,
 ExecutorService service,
 int minDS,
 int maxDS,
 int dsInc)

createMultiResolutionNonRigid

public static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> createMultiResolutionNonRigid(SpimData2 spimData,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToFuse,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToUse,
 ArrayList<String> labels,
 FusionGUI.FusionType fusionType,
 boolean displayDistances,
 long controlPointDistance,
 double alpha,
 int interpolation,
 net.imglib2.Interval boundingBox,
 Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments,
 ExecutorService service,
 int minDS,
 int maxDS,
 int dsInc)

createMultiResolutionNonRigid

public static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> createMultiResolutionNonRigid(mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader,
 Map<mpicbg.spim.data.sequence.ViewId,net.imglib2.realtransform.AffineTransform3D> viewRegistrations,
 Map<mpicbg.spim.data.sequence.ViewId,ViewInterestPointLists> viewInterestPoints,
 Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToFuse,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewsToUse,
 ArrayList<String> labels,
 FusionGUI.FusionType fusionType,
 boolean displayDistances,
 long controlPointDistance,
 double alpha,
 int interpolation,
 net.imglib2.Interval boundingBox,
 Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments,
 ExecutorService service,
 int minDS,
 int maxDS,
 int dsInc)

createMultiResolutionAffine

public static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> createMultiResolutionAffine(SpimData2 spimData,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewIds,
 net.imglib2.Interval boundingBox,
 int minDS,
 int maxDS,
 int dsInc)

createMultiResolutionAffine

public static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> createMultiResolutionAffine(mpicbg.spim.data.generic.sequence.BasicImgLoader imgloader,
 Map<mpicbg.spim.data.sequence.ViewId,net.imglib2.realtransform.AffineTransform3D> registrations,
 Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> viewDescriptions,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> views,
 FusionGUI.FusionType fusionType,
 int interpolation,
 net.imglib2.Interval boundingBox,
 Map<? extends mpicbg.spim.data.sequence.ViewId,mpicbg.models.AffineModel1D> intensityAdjustments,
 int minDS,
 int maxDS,
 int dsInc)

createVolatileRAIs

public static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.volatiles.VolatileFloatType>,net.imglib2.realtransform.AffineTransform3D>> createVolatileRAIs(List<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> multiRes)

createVolatileRAIs

public static ArrayList<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.volatiles.VolatileFloatType>,net.imglib2.realtransform.AffineTransform3D>> createVolatileRAIs(List<net.imglib2.util.Pair<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>,net.imglib2.realtransform.AffineTransform3D>> multiRes,
 long maxCacheSize,
 int[] cellDim)