Package net.preibisch.mvrecon.fiji.plugin

Class PSF_Assign

java.lang.Object

net.preibisch.mvrecon.fiji.plugin.PSF_Assign

All Implemented Interfaces:

ij.plugin.PlugIn

public class PSF_Assign
extends Object
implements ij.plugin.PlugIn

Field Summary

Fields

Modifier and Type	Field	Description
static String[]	assignTypeChoices
static int	defaultAssignType
static int	defaultChannelFrom
static int	defaultChannelTo
static int	defaultPSF
static String	defaultPSFPath
static int	defaultTimePointFrom

Constructor Summary

Constructors

Constructor	Description
PSF_Assign()

Method Summary

Modifier and Type	Method	Description
static String[]	assemblePSFs(ArrayList<mpicbg.spim.data.sequence.ViewId> views, HashMap<mpicbg.spim.data.sequence.ViewId,PointSpreadFunction> psfs)
static boolean	assign(SpimData2 spimData, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewCollection)
static boolean	assign(SpimData2 spimData, Collection<? extends mpicbg.spim.data.sequence.ViewId> viewCollection, String xmlFileName, boolean saveXml)
static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType>	loadAndTestPSF(File file)
static void	main(String[] args)
void	run(String arg)
static ArrayList<mpicbg.spim.data.sequence.ViewId>	viewsWithUniquePSFs(PointSpreadFunctions psfs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

assignTypeChoices

public static String[] assignTypeChoices

defaultAssignType

public static int defaultAssignType

defaultPSF

public static int defaultPSF

defaultPSFPath

public static String defaultPSFPath

defaultChannelFrom

public static int defaultChannelFrom

defaultChannelTo

public static int defaultChannelTo

defaultTimePointFrom

public static int defaultTimePointFrom

Constructor Details

PSF_Assign

public PSF_Assign()

Method Details

run

public void run(String arg)

Specified by:

run in interface ij.plugin.PlugIn

assign

public static boolean assign(SpimData2 spimData,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewCollection)

assign

public static boolean assign(SpimData2 spimData,
 Collection<? extends mpicbg.spim.data.sequence.ViewId> viewCollection,
 String xmlFileName,
 boolean saveXml)

loadAndTestPSF

public static net.imglib2.img.Img<net.imglib2.type.numeric.real.FloatType> loadAndTestPSF(File file)

assemblePSFs

public static String[] assemblePSFs(ArrayList<mpicbg.spim.data.sequence.ViewId> views,
 HashMap<mpicbg.spim.data.sequence.ViewId,PointSpreadFunction> psfs)

viewsWithUniquePSFs

public static ArrayList<mpicbg.spim.data.sequence.ViewId> viewsWithUniquePSFs(PointSpreadFunctions psfs)

main

public static void main(String[] args)