Package net.preibisch.mvrecon.fiji.datasetmanager

Class DHMMetaData

java.lang.Object

net.preibisch.mvrecon.fiji.datasetmanager.DHMMetaData

public class DHMMetaData
extends Object

Constructor Summary

Constructors

Constructor	Description
DHMMetaData(File directory, double calX, double calY, double calZ, String calUnit, boolean compareAllSizes)

Method Summary

Modifier and Type	Method	Description
boolean	checkIntegrity(File directory)
static List<String>	commonStrings(List<String> listA, List<String> listB)
int	getAmpChannelId()
String	getAmplitudeDir()
int	getDepth()
File	getDir()
String	getExt()
int	getHeight()
int	getPhaseChannelId()
String	getPhaseDir()
String	getStackDir()
List<String>	getTimepoints()
boolean	getTimestampsAndZPlanes(boolean compareAllSizes)	Go through the directories and make sure all timestamps are present for all ampliude/phase-stacks
int	getWidth()
List<String>	getZPlanes()
boolean	loadMetaData()
static ImgLib2Temp.Pair<List<String>,String>	loadTimepoints(File dataDir)
static void	main(String[] args)
boolean	parseTimestamps(File directory, String timestampFile)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DHMMetaData

public DHMMetaData(File directory,
 double calX,
 double calY,
 double calZ,
 String calUnit,
 boolean compareAllSizes)

Method Details

loadMetaData

public boolean loadMetaData()

getDir

public File getDir()

getStackDir

public String getStackDir()

getAmplitudeDir

public String getAmplitudeDir()

getPhaseDir

public String getPhaseDir()

getZPlanes

public List<String> getZPlanes()

getTimepoints

public List<String> getTimepoints()

getAmpChannelId

public int getAmpChannelId()

getPhaseChannelId

public int getPhaseChannelId()

getWidth

public int getWidth()

getHeight

public int getHeight()

getDepth

public int getDepth()

getExt

public String getExt()

getTimestampsAndZPlanes

public boolean getTimestampsAndZPlanes(boolean compareAllSizes)

Go through the directories and make sure all timestamps are present for all ampliude/phase-stacks

Parameters:

compareAllSizes - - open all 2d-planes and make sure the dimensions match?

Returns:

if succesful

commonStrings

public static List<String> commonStrings(List<String> listA,
 List<String> listB)

loadTimepoints

public static ImgLib2Temp.Pair<List<String>,String> loadTimepoints(File dataDir)

parseTimestamps

public boolean parseTimestamps(File directory,
 String timestampFile)

checkIntegrity

public boolean checkIntegrity(File directory)

main

public static void main(String[] args)