net.imglib2.roi

Class BinaryMaskRegionOfInterest<T extends BitType,I extends RandomAccessibleInterval<T>>

java.lang.Object

net.imglib2.roi.AbstractRegionOfInterest

net.imglib2.roi.BinaryMaskRegionOfInterest<T,I>

All Implemented Interfaces:

EuclideanSpace, RealInterval, RealRandomAccessible<BitType>, RealRandomAccessibleRealInterval<BitType>, IterableRegionOfInterest, RegionOfInterest

Deprecated.

@Deprecated
public class BinaryMaskRegionOfInterest<T extends BitType,I extends RandomAccessibleInterval<T>>
extends AbstractRegionOfInterest
implements IterableRegionOfInterest

TODO

Author:

Stephan Saalfeld, Lee Kamentsky, leek

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	BinaryMaskRegionOfInterest.BMROIIterableInterval<TT extends Type<TT>> Deprecated.
protected class	BinaryMaskRegionOfInterest.BMROIIterationOrder Deprecated.

Nested classes/interfaces inherited from class net.imglib2.roi.AbstractRegionOfInterest

AbstractRegionOfInterest.AROIRandomAccess

Field Summary

Fields inherited from class net.imglib2.roi.AbstractRegionOfInterest

nDimensions

Constructor Summary

Constructors

Constructor and Description
BinaryMaskRegionOfInterest(I img) Deprecated.

Method Summary

Modifier and Type	Method and Description
boolean	contains(double[] position) Deprecated. Determine whether a point is a member of the region of interest
protected long	getCachedSize() Deprecated. Scan the image, counting bits once, then return the cached value.
protected long[]	getFirstPosition() Deprecated.
protected long[]	getFirstRelativePosition() Deprecated.
I	getImg() Deprecated.
<TT extends Type<TT>> IterableInterval<TT>	getIterableIntervalOverROI(RandomAccessible<TT> src) Deprecated. Given a sampler in the ROI's space, provide an iterable that can make iterators over the space, sampling pixels from the sampler.
double[]	getOrigin() Deprecated.
protected void	getRealExtrema(double[] min, double[] max) Deprecated. Get the minimum and maximum corners of a bounding hypercube using real coordinates (which might have fractional components)
void	move(double displacement, int d) Deprecated.
protected void	validate() Deprecated.

Methods inherited from class net.imglib2.roi.AbstractRegionOfInterest

invalidateCachedState, move, numDimensions, realMax, realMax, realMax, realMin, realMin, realMin, realRandomAccess, realRandomAccess, validateRealExtremaCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.roi.RegionOfInterest

move

Methods inherited from interface net.imglib2.RealRandomAccessible

realRandomAccess, realRandomAccess

Methods inherited from interface net.imglib2.RealInterval

realMax, realMax, realMax, realMin, realMin, realMin

Methods inherited from interface net.imglib2.EuclideanSpace

numDimensions

Constructor Detail

BinaryMaskRegionOfInterest

public BinaryMaskRegionOfInterest(I img)

Deprecated.

Method Detail

getIterableIntervalOverROI

public <TT extends Type<TT>> IterableInterval<TT> getIterableIntervalOverROI(RandomAccessible<TT> src)

Deprecated.

Description copied from interface: IterableRegionOfInterest

Given a sampler in the ROI's space, provide an iterable that can make iterators over the space, sampling pixels from the sampler. You can then use these cursors to get at all of the pixels in the ROI.

Specified by:

getIterableIntervalOverROI in interface IterableRegionOfInterest

Parameters:

src - - a RandomAccessible that can generate RandomAccess objects. The cursors that IterableInterval generates will use "src" to generate a RandomAccess to sample the space.

contains

public boolean contains(double[] position)

Deprecated.

Description copied from interface: RegionOfInterest

Determine whether a point is a member of the region of interest

Specified by:

contains in interface RegionOfInterest

Parameters:

position - position in question

Returns:

true if a member

getRealExtrema

protected void getRealExtrema(double[] min,
                              double[] max)

Deprecated.

Description copied from class: AbstractRegionOfInterest

Get the minimum and maximum corners of a bounding hypercube using real coordinates (which might have fractional components)

Specified by:

getRealExtrema in class AbstractRegionOfInterest

getCachedSize

protected long getCachedSize()

Deprecated.

Scan the image, counting bits once, then return the cached value.

getFirstPosition

protected long[] getFirstPosition()

Deprecated.

getFirstRelativePosition

protected long[] getFirstRelativePosition()

Deprecated.

validate

protected void validate()

Deprecated.

move

public void move(double displacement,
                 int d)

Deprecated.

Specified by:

move in interface RegionOfInterest

getImg

public I getImg()

Deprecated.

getOrigin

public double[] getOrigin()

Deprecated.