Module io.scif

Package io.scif.img.converters

Class ArrayDataAccessConverter

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

io.scif.AbstractSCIFIOPlugin

io.scif.img.converters.AbstractPlaneConverter

io.scif.img.converters.ArrayDataAccessConverter

All Implemented Interfaces:

PlaneConverter, SCIFIOPlugin, Comparable<org.scijava.Prioritized>, org.scijava.Contextual, org.scijava.Identifiable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.plugin.SingletonPlugin, org.scijava.Prioritized, org.scijava.Versioned

public class ArrayDataAccessConverter
extends AbstractPlaneConverter

PlaneConverter implementation specialized for populating ArrayImg instances.

Author:

Mark Hiner, Philipp Hanslovsky

Constructor Summary

Constructors

Constructor	Description
ArrayDataAccessConverter()

Method Summary

Modifier and Type	Method	Description
<T extends net.imglib2.type.numeric.RealType<T>> void	populatePlane(Reader reader, int imageIndex, int planeIndex, byte[] source, net.imagej.ImgPlus<T> dest, SCIFIOConfig config)

Methods inherited from class io.scif.AbstractSCIFIOPlugin

getVersion, log

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority, toString

Methods inherited from class org.scijava.AbstractContextual

context, getContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier

Methods inherited from interface io.scif.SCIFIOPlugin

getVersion, log

Constructor Detail

ArrayDataAccessConverter

public ArrayDataAccessConverter()

Method Detail

populatePlane

public <T extends net.imglib2.type.numeric.RealType<T>> void populatePlane(Reader reader,
                                                                           int imageIndex,
                                                                           int planeIndex,
                                                                           byte[] source,
                                                                           net.imagej.ImgPlus<T> dest,
                                                                           SCIFIOConfig config)

Parameters:

reader - Reader that was used to open the source plane

imageIndex - image index within the dataset

planeIndex - plane index within the image

source - the opened plane

dest - the ImgPlus to populate

config - SCIFIOConfig for opening this plane